Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47354 * 2 1 4 4 N 1.46501 * 109.47348 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00188 * 270.00230 * 4 3 2 6 6 H 1.08005 * 119.99789 * 69.19256 * 5 4 3 7 7 C 1.38945 * 120.00330 * 249.18700 * 5 4 3 8 8 N 1.31418 * 119.99909 * 343.91554 * 7 5 4 9 9 Si 1.86797 * 120.00419 * 163.90722 * 7 5 4 10 10 H 1.48500 * 109.46913 * 90.00320 * 9 7 5 11 11 H 1.48497 * 109.47285 * 210.00459 * 9 7 5 12 12 H 1.48503 * 109.46953 * 330.00645 * 9 7 5 13 13 C 1.34778 * 119.99541 * 89.99817 * 4 3 2 14 14 O 1.21289 * 120.00053 * 9.54999 * 13 4 3 15 15 C 1.50698 * 119.99864 * 189.53906 * 13 4 3 16 16 H 1.09003 * 110.27266 * 302.99349 * 15 13 4 17 17 C 1.54349 * 110.30193 * 65.06992 * 15 13 4 18 18 C 1.54348 * 102.39426 * 145.26701 * 17 15 13 19 19 C 1.51373 * 105.16770 * 333.65522 * 18 17 15 20 20 C 1.38501 * 130.38670 * 197.14769 * 19 18 17 21 21 C 1.38102 * 120.21079 * 180.02562 * 20 19 18 22 22 C 1.38247 * 119.93861 * 359.93653 * 21 20 19 23 23 C 1.38099 * 119.93279 * 0.09558 * 22 21 20 24 24 C 1.38216 * 109.76044 * 17.18471 * 19 18 17 25 25 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46518 * 299.99993 * 1 2 3 27 27 H 1.08998 * 109.46938 * 59.99878 * 1 2 3 28 28 H 1.09003 * 109.47110 * 239.99676 * 2 1 3 29 29 H 1.08999 * 109.47199 * 120.00604 * 2 1 3 30 30 H 1.09006 * 109.46780 * 59.99873 * 3 2 1 31 31 H 1.08999 * 109.47460 * 300.00444 * 3 2 1 32 32 H 0.96998 * 120.00039 * 175.00807 * 8 7 5 33 33 H 1.09000 * 110.82098 * 27.03891 * 17 15 13 34 34 H 1.08999 * 110.99167 * 263.57421 * 17 15 13 35 35 H 1.09001 * 110.30193 * 214.73367 * 18 17 15 36 36 H 1.08999 * 110.38566 * 92.61945 * 18 17 15 37 37 H 1.07999 * 119.89131 * 359.76427 * 20 19 18 38 38 H 1.08002 * 120.02841 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.03559 * 180.02562 * 22 21 20 40 40 H 1.08007 * 119.89088 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.4425 1.1881 6 1 4.1721 0.5682 1.8220 7 6 4.9076 2.5673 1.5762 8 7 5.1974 3.4982 0.6950 9 14 5.4602 2.7565 3.3505 10 1 6.8041 2.1473 3.5180 11 1 5.5238 4.1988 3.6981 12 1 4.4921 2.0737 4.2460 13 6 4.1794 1.4422 -1.1664 14 8 3.5859 1.6163 -2.2097 15 6 5.6708 1.2259 -1.1748 16 1 6.1640 1.9714 -0.5511 17 6 6.0085 -0.1960 -0.6783 18 6 7.2410 -0.5612 -1.5327 19 6 7.1046 0.2610 -2.7964 20 6 7.7218 0.1220 -4.0284 21 6 7.4383 1.0056 -5.0513 22 6 6.5347 2.0316 -4.8461 23 6 5.9188 2.1721 -3.6181 24 6 6.2024 1.2878 -2.5907 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 5.6342 4.3162 0.9795 33 1 5.1839 -0.8811 -0.8750 34 1 6.2602 -0.1897 0.3822 35 1 7.2342 -1.6248 -1.7710 36 1 8.1588 -0.2976 -1.0073 37 1 8.4302 -0.6773 -4.1884 38 1 7.9216 0.8947 -6.0107 39 1 6.3115 2.7231 -5.6451 40 1 5.2133 2.9742 -3.4585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354725972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = -22.969837 kcal Electronic energy + Delta-G solvation = -21662.651797 eV Core-core repulsion = 18634.493460 eV Total energy + Delta-G solvation = -3028.158337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.81284 -38.00894 -35.01065 -34.72808 -33.17382 -31.06220 -30.69279 -28.36065 -27.23192 -25.67118 -24.27233 -22.01710 -21.36323 -20.38836 -20.19676 -19.09540 -16.80036 -15.92159 -15.20898 -15.18931 -14.56103 -14.52723 -14.28354 -14.05246 -13.58106 -13.50228 -12.76216 -12.63868 -12.38045 -12.09394 -12.00246 -11.63495 -11.53048 -11.28297 -11.11204 -11.01912 -10.84947 -10.73097 -10.57213 -10.50214 -10.36034 -10.24132 -10.00399 -9.78359 -8.91214 -8.29780 -8.15458 -7.76704 -7.06409 -6.45456 -4.39441 1.95192 2.03872 3.10289 3.20526 3.23085 4.03139 4.26773 4.37801 4.79749 4.96524 5.07609 5.28900 5.49587 5.60047 5.62481 5.65669 5.74128 5.79995 5.93989 6.00027 6.11475 6.22426 6.25406 6.39104 6.43334 6.47561 6.52293 6.52871 6.59070 6.72001 6.77193 6.86325 6.93607 7.01549 7.06306 7.13359 7.23790 7.42106 7.46406 7.64586 8.10730 8.64409 8.98027 9.62946 10.08784 10.61356 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015027 B = 0.007501 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.820689 B = 3731.837328 C = 4692.428382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.118 3.882 4 N -0.464 5.464 5 C -0.341 4.341 6 H 0.076 0.924 7 C 0.058 3.942 8 N -0.856 5.856 9 Si 0.902 3.098 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.534 3.466 14 O -0.602 6.602 15 C -0.058 4.058 16 H 0.136 0.864 17 C -0.093 4.093 18 C -0.081 4.081 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.134 4.134 22 C -0.132 4.132 23 C -0.075 4.075 24 C -0.054 4.054 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.272 0.728 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 -5.155 -2.528 6.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.006 4.006 4 N -0.185 5.185 5 C -0.469 4.469 6 H 0.093 0.907 7 C -0.149 4.149 8 N -0.491 5.491 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.325 3.675 14 O -0.487 6.487 15 C -0.078 4.078 16 H 0.153 0.847 17 C -0.131 4.131 18 C -0.118 4.118 19 C -0.108 4.108 20 C -0.138 4.138 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.093 4.093 24 C -0.054 4.054 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.122 -4.895 -3.056 6.148 hybrid contribution 0.280 0.400 0.967 1.084 sum 2.402 -4.495 -2.088 5.508 Atomic orbital electron populations 1.21686 0.96548 1.00677 1.01373 1.21852 0.94689 0.99196 1.01543 1.21359 0.83839 0.94555 1.00862 1.43095 1.02784 1.67768 1.04842 1.19039 1.29983 1.00124 0.97782 0.90665 1.25768 0.95318 0.95674 0.98167 1.69875 1.37523 1.08187 1.33480 0.86365 0.79153 0.77780 0.83918 1.20119 1.20816 1.19271 1.20309 0.88510 0.75554 0.83162 1.90489 1.70838 1.54217 1.33120 1.20759 0.95294 0.99445 0.92326 0.84700 1.22071 0.96078 0.95072 0.99846 1.21091 0.99413 0.98409 0.92878 1.20639 0.97838 0.97454 0.94820 1.20428 1.00883 0.99912 0.92543 1.20840 0.99700 0.96269 0.98400 1.20968 0.98112 0.98825 0.97120 1.20719 0.97738 0.98979 0.91864 1.20498 0.95316 0.94165 0.95451 0.93482 0.93013 0.93070 0.92726 0.92209 0.92039 0.92279 0.91753 0.92012 0.89743 0.91511 0.90670 0.87136 0.86847 0.86724 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.13 -2.50 6.26 -26.73 -0.17 -2.66 16 3 C 0.12 2.58 5.45 -4.04 -0.02 2.56 16 4 N -0.46 -11.37 2.40 -114.82 -0.28 -11.65 16 5 C -0.34 -8.27 7.25 -14.94 -0.11 -8.38 16 6 H 0.08 1.77 7.88 -52.48 -0.41 1.36 16 7 C 0.06 1.42 4.90 -17.47 -0.09 1.33 16 8 N -0.86 -22.15 11.16 55.50 0.62 -21.53 16 9 Si 0.90 18.76 29.59 -169.99 -5.03 13.73 16 10 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 C 0.53 13.58 6.11 -10.99 -0.07 13.51 16 14 O -0.60 -16.55 14.31 5.55 0.08 -16.47 16 15 C -0.06 -1.32 2.40 -91.89 -0.22 -1.54 16 16 H 0.14 3.37 5.57 -51.93 -0.29 3.08 16 17 C -0.09 -1.80 5.80 -25.32 -0.15 -1.95 16 18 C -0.08 -1.35 6.77 -26.85 -0.18 -1.53 16 19 C -0.11 -2.02 6.14 -104.20 -0.64 -2.66 16 20 C -0.12 -1.97 10.04 -39.53 -0.40 -2.37 16 21 C -0.13 -2.14 10.05 -39.63 -0.40 -2.54 16 22 C -0.13 -2.32 10.05 -39.63 -0.40 -2.72 16 23 C -0.07 -1.58 8.92 -39.54 -0.35 -1.94 16 24 C -0.05 -1.17 5.35 -104.21 -0.56 -1.73 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 31 H 0.06 1.37 7.32 -51.93 -0.38 0.99 16 32 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 33 H 0.06 1.22 7.91 -51.93 -0.41 0.81 16 34 H 0.08 1.59 7.81 -51.93 -0.41 1.19 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.12 2.75 7.53 -52.48 -0.40 2.36 16 LS Contribution 325.71 15.07 4.91 4.91 Total: -1.00 -28.36 325.71 -9.15 -37.51 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.07 Total: 7.94 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -3.37 Total: -14.43 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.34 Total: -33.18 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.08 Total: -16.47 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.36 -9.15 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354725972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.536 kcal (2) G-P(sol) polarization free energy of solvation -28.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds