Wall clock time and date at job start Mon Mar 30 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47354 * 2 1 4 4 N 1.46501 * 109.47348 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00188 * 270.00230 * 4 3 2 6 6 H 1.08005 * 119.99789 * 69.19256 * 5 4 3 7 7 C 1.38945 * 120.00330 * 249.18700 * 5 4 3 8 8 N 1.31418 * 119.99909 * 343.91554 * 7 5 4 9 9 Si 1.86797 * 120.00419 * 163.90722 * 7 5 4 10 10 H 1.48500 * 109.46913 * 90.00320 * 9 7 5 11 11 H 1.48497 * 109.47285 * 210.00459 * 9 7 5 12 12 H 1.48503 * 109.46953 * 330.00645 * 9 7 5 13 13 C 1.34778 * 119.99541 * 89.99817 * 4 3 2 14 14 O 1.21289 * 120.00053 * 9.54999 * 13 4 3 15 15 C 1.50698 * 119.99864 * 189.53906 * 13 4 3 16 16 H 1.09003 * 110.27266 * 302.99349 * 15 13 4 17 17 C 1.54349 * 110.30193 * 65.06992 * 15 13 4 18 18 C 1.54348 * 102.39426 * 145.26701 * 17 15 13 19 19 C 1.51373 * 105.16770 * 333.65522 * 18 17 15 20 20 C 1.38501 * 130.38670 * 197.14769 * 19 18 17 21 21 C 1.38102 * 120.21079 * 180.02562 * 20 19 18 22 22 C 1.38247 * 119.93861 * 359.93653 * 21 20 19 23 23 C 1.38099 * 119.93279 * 0.09558 * 22 21 20 24 24 C 1.38216 * 109.76044 * 17.18471 * 19 18 17 25 25 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46518 * 299.99993 * 1 2 3 27 27 H 1.08998 * 109.46938 * 59.99878 * 1 2 3 28 28 H 1.09003 * 109.47110 * 239.99676 * 2 1 3 29 29 H 1.08999 * 109.47199 * 120.00604 * 2 1 3 30 30 H 1.09006 * 109.46780 * 59.99873 * 3 2 1 31 31 H 1.08999 * 109.47460 * 300.00444 * 3 2 1 32 32 H 0.96998 * 120.00039 * 175.00807 * 8 7 5 33 33 H 1.09000 * 110.82098 * 27.03891 * 17 15 13 34 34 H 1.08999 * 110.99167 * 263.57421 * 17 15 13 35 35 H 1.09001 * 110.30193 * 214.73367 * 18 17 15 36 36 H 1.08999 * 110.38566 * 92.61945 * 18 17 15 37 37 H 1.07999 * 119.89131 * 359.76427 * 20 19 18 38 38 H 1.08002 * 120.02841 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.03559 * 180.02562 * 22 21 20 40 40 H 1.08007 * 119.89088 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.4425 1.1881 6 1 4.1721 0.5682 1.8220 7 6 4.9076 2.5673 1.5762 8 7 5.1974 3.4982 0.6950 9 14 5.4602 2.7565 3.3505 10 1 6.8041 2.1473 3.5180 11 1 5.5238 4.1988 3.6981 12 1 4.4921 2.0737 4.2460 13 6 4.1794 1.4422 -1.1664 14 8 3.5859 1.6163 -2.2097 15 6 5.6708 1.2259 -1.1748 16 1 6.1640 1.9714 -0.5511 17 6 6.0085 -0.1960 -0.6783 18 6 7.2410 -0.5612 -1.5327 19 6 7.1046 0.2610 -2.7964 20 6 7.7218 0.1220 -4.0284 21 6 7.4383 1.0056 -5.0513 22 6 6.5347 2.0316 -4.8461 23 6 5.9188 2.1721 -3.6181 24 6 6.2024 1.2878 -2.5907 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 5.6342 4.3162 0.9795 33 1 5.1839 -0.8811 -0.8750 34 1 6.2602 -0.1897 0.3822 35 1 7.2342 -1.6248 -1.7710 36 1 8.1588 -0.2976 -1.0073 37 1 8.4302 -0.6773 -4.1884 38 1 7.9216 0.8947 -6.0107 39 1 6.3115 2.7231 -5.6451 40 1 5.2133 2.9742 -3.4585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354725972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:17 Heat of formation + Delta-G solvation = -36.504278 kcal Electronic energy + Delta-G solvation = -21663.238695 eV Core-core repulsion = 18634.493460 eV Total energy + Delta-G solvation = -3028.745234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41665 -39.74061 -36.77152 -36.35502 -34.85525 -32.85982 -32.15354 -29.82106 -28.75418 -27.42012 -26.02464 -23.46542 -22.93448 -21.99393 -21.61837 -20.93517 -18.60053 -17.56911 -17.05674 -16.78920 -16.28040 -16.00866 -15.81675 -15.55940 -15.31187 -15.07818 -14.24504 -14.10735 -13.92596 -13.76405 -13.47519 -13.27514 -13.20235 -12.82309 -12.74728 -12.57401 -12.43007 -12.35436 -12.07136 -12.05315 -11.95436 -11.73616 -11.54525 -11.42400 -10.78565 -10.17637 -9.58675 -9.28327 -8.99721 -8.33763 -6.34967 0.54545 0.60910 1.44679 1.48727 1.59531 2.20653 2.40363 2.91486 2.94396 3.20454 3.65682 3.79742 4.11334 4.20398 4.24645 4.26780 4.32605 4.36137 4.51443 4.53194 4.68905 4.74059 4.79388 4.84797 4.93868 4.99479 5.05085 5.07755 5.14958 5.21552 5.25615 5.32877 5.38575 5.42554 5.45282 5.58103 5.64237 5.71431 5.93942 6.19803 6.24212 6.71198 7.07342 7.68354 8.16542 8.73304 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015027 B = 0.007501 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.820689 B = 3731.837328 C = 4692.428382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.113 3.887 4 N -0.472 5.472 5 C -0.348 4.348 6 H 0.084 0.916 7 C 0.018 3.982 8 N -0.892 5.892 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.289 1.289 12 H -0.259 1.259 13 C 0.518 3.482 14 O -0.637 6.637 15 C -0.058 4.058 16 H 0.108 0.892 17 C -0.088 4.088 18 C -0.071 4.071 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.107 4.107 24 C -0.096 4.096 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.271 0.729 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.152 0.848 38 H 0.158 0.842 39 H 0.138 0.862 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 -7.289 -2.416 8.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C -0.010 4.010 4 N -0.192 5.192 5 C -0.476 4.476 6 H 0.101 0.899 7 C -0.186 4.186 8 N -0.527 5.527 9 Si 0.795 3.205 10 H -0.191 1.191 11 H -0.214 1.214 12 H -0.183 1.183 13 C 0.310 3.690 14 O -0.524 6.524 15 C -0.078 4.078 16 H 0.126 0.874 17 C -0.126 4.126 18 C -0.108 4.108 19 C -0.114 4.114 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.153 4.153 23 C -0.126 4.126 24 C -0.096 4.096 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.170 0.830 38 H 0.176 0.824 39 H 0.156 0.844 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.654 -7.048 -2.922 8.459 hybrid contribution -0.223 1.105 0.853 1.414 sum 3.431 -5.943 -2.069 7.167 Atomic orbital electron populations 1.21639 0.93422 1.02495 1.01963 1.21715 0.97324 0.96243 1.00757 1.21486 0.82856 0.96871 0.99821 1.43380 1.03834 1.67110 1.04915 1.19292 1.30200 1.00688 0.97406 0.89859 1.26533 0.95083 0.95152 1.01822 1.70026 1.38589 1.08703 1.35383 0.85283 0.79139 0.77248 0.78792 1.19135 1.21448 1.18264 1.20943 0.89930 0.75189 0.82941 1.90438 1.71840 1.55909 1.34260 1.20683 0.93041 1.00614 0.93490 0.87448 1.22023 0.97312 0.92772 1.00478 1.21080 0.98377 0.99823 0.91492 1.20962 0.97221 0.96614 0.96590 1.20922 1.00434 1.00570 0.91232 1.21352 0.98060 0.94474 1.00082 1.21254 0.97962 1.00006 0.96043 1.20674 0.98875 0.98947 0.94065 1.20609 0.97627 0.96330 0.95079 0.91014 0.91668 0.93279 0.94619 0.91717 0.91646 0.94571 0.91967 0.92976 0.89584 0.88447 0.88831 0.83017 0.82421 0.84439 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.12 -4.58 6.26 30.59 0.19 -4.39 16 3 C 0.11 5.17 5.45 86.38 0.47 5.64 16 4 N -0.47 -24.20 2.40 -635.55 -1.53 -25.73 16 5 C -0.35 -17.23 7.25 84.04 0.61 -16.62 16 6 H 0.08 3.93 7.88 -2.91 -0.02 3.90 16 7 C 0.02 0.91 4.90 84.92 0.42 1.33 16 8 N -0.89 -48.18 11.16 21.66 0.24 -47.94 16 9 Si 0.97 38.62 29.59 68.60 2.03 40.65 16 10 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 11 H -0.29 -11.68 7.11 99.48 0.71 -10.98 16 12 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 13 C 0.52 27.96 6.11 87.66 0.54 28.50 16 14 O -0.64 -37.64 14.31 -3.06 -0.04 -37.69 16 15 C -0.06 -2.76 2.40 -11.62 -0.03 -2.79 16 16 H 0.11 5.69 5.57 -2.39 -0.01 5.68 16 17 C -0.09 -3.44 5.80 31.51 0.18 -3.26 16 18 C -0.07 -2.23 6.77 30.52 0.21 -2.02 16 19 C -0.11 -4.11 6.14 -19.59 -0.12 -4.23 16 20 C -0.11 -3.34 10.04 22.30 0.22 -3.11 16 21 C -0.12 -3.47 10.05 22.24 0.22 -3.25 16 22 C -0.13 -4.65 10.05 22.24 0.22 -4.43 16 23 C -0.11 -4.78 8.92 22.30 0.20 -4.58 16 24 C -0.10 -4.31 5.35 -19.60 -0.10 -4.42 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.07 2.87 8.04 -2.38 -0.02 2.85 16 31 H 0.04 1.79 7.32 -2.39 -0.02 1.77 16 32 H 0.27 13.96 8.32 -92.71 -0.77 13.19 16 33 H 0.05 2.09 7.91 -2.39 -0.02 2.07 16 34 H 0.09 3.25 7.81 -2.39 -0.02 3.23 16 35 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 38 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 39 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 40 H 0.08 4.20 7.53 -2.91 -0.02 4.18 16 Total: -1.00 -66.05 325.71 5.65 -60.39 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 1.01 Total: 31.20 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 3.94 Total: -20.90 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -1.29 Total: -73.66 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.04 Total: -37.69 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -66.05 5.65 -60.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354725972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.890 kcal (2) G-P(sol) polarization free energy of solvation -66.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds