Wall clock time and date at job start Mon Mar 30 2020 01:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47168 * 85.79533 * 3 2 1 5 5 C 1.52998 * 109.46910 * 205.79632 * 3 2 1 6 6 C 1.52998 * 109.47359 * 65.00191 * 5 3 2 7 7 N 1.46900 * 109.47295 * 325.79518 * 3 2 1 8 8 C 1.46895 * 111.00038 * 180.02562 * 7 3 2 9 9 C 1.50702 * 109.47155 * 179.97438 * 8 7 3 10 10 C 1.38301 * 119.93472 * 269.72750 * 9 8 7 11 11 C 1.38092 * 120.06896 * 179.72231 * 10 9 8 12 12 C 1.38879 * 119.93331 * 0.57012 * 11 10 9 13 13 O 1.35754 * 120.07003 * 179.68189 * 12 11 10 14 14 C 1.34830 * 116.99622 * 174.48982 * 13 12 11 15 15 H 1.07994 * 120.00187 * 5.05780 * 14 13 12 16 16 C 1.38657 * 119.99798 * 185.05572 * 14 13 12 17 17 N 1.31564 * 119.99706 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00152 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46955 * 90.00160 * 18 16 14 20 20 H 1.48502 * 109.46862 * 209.99697 * 18 16 14 21 21 H 1.48497 * 109.46783 * 329.99868 * 18 16 14 22 22 C 1.38875 * 119.85956 * 359.70311 * 12 11 10 23 23 C 1.38100 * 119.93265 * 359.97438 * 22 12 11 24 24 H 4.44649 * 5.63333 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.47372 * 59.99688 * 4 3 2 26 26 H 1.09002 * 109.47734 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.47123 * 300.00236 * 4 3 2 28 28 H 1.09004 * 109.47354 * 185.00214 * 5 3 2 29 29 H 1.09001 * 109.47212 * 304.99523 * 5 3 2 30 30 H 1.08992 * 109.47377 * 59.99699 * 6 5 3 31 31 H 1.09001 * 109.47053 * 180.02562 * 6 5 3 32 32 H 1.09004 * 109.47070 * 299.99529 * 6 5 3 33 33 H 1.00899 * 110.99807 * 56.04556 * 7 3 2 34 34 H 1.08999 * 109.47324 * 299.99462 * 8 7 3 35 35 H 1.09000 * 109.47340 * 60.00306 * 8 7 3 36 36 H 1.08000 * 119.95848 * 359.97438 * 10 9 8 37 37 H 1.08008 * 120.03488 * 180.27177 * 11 10 9 38 38 H 0.97004 * 119.99580 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.03594 * 179.97438 * 22 12 11 40 40 H 1.08001 * 119.96375 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.1049 -1.4386 5 6 3.1554 1.2996 0.6277 6 6 2.7507 1.3464 2.1025 7 7 3.1362 -1.1445 0.7786 8 6 4.6047 -1.1759 0.8011 9 6 5.0695 -2.3611 1.6076 10 6 5.2870 -2.2284 2.9669 11 6 5.7074 -3.3140 3.7096 12 6 5.9233 -4.5371 3.0881 13 8 6.3428 -5.6045 3.8144 14 6 6.4230 -6.7877 3.1731 15 1 6.2383 -6.8395 2.1103 16 6 6.7427 -7.9381 3.8781 17 7 6.9682 -7.8749 5.1727 18 14 6.8531 -9.5777 2.9897 19 1 8.2417 -9.7862 2.5066 20 1 6.4842 -10.6722 3.9231 21 1 5.9213 -9.5778 1.8335 22 6 5.7094 -4.6657 1.7219 23 6 5.2826 -3.5780 0.9858 24 1 -1.0500 0.0002 0.0000 25 1 2.7923 0.7449 -2.0163 26 1 4.2461 -0.1039 -1.4387 27 1 2.7931 -1.0303 -1.8858 28 1 4.2417 1.3404 0.5477 29 1 2.7204 2.1511 0.1043 30 1 3.1856 0.4950 2.6258 31 1 3.1132 2.2721 2.5495 32 1 1.6643 1.3058 2.1826 33 1 2.7611 -2.0109 0.4226 34 1 4.9820 -1.2591 -0.2181 35 1 4.9808 -0.2587 1.2541 36 1 5.1239 -1.2756 3.4487 37 1 5.8729 -3.2108 4.7719 38 1 7.1915 -8.6797 5.6660 39 1 5.8768 -5.6154 1.2357 40 1 5.1165 -3.6774 -0.0767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384139324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:44 Heat of formation + Delta-G solvation = 48.092916 kcal Electronic energy + Delta-G solvation = -20126.048342 eV Core-core repulsion = 17100.971518 eV Total energy + Delta-G solvation = -3025.076825 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.32478 -38.56416 -36.50980 -33.14357 -32.22294 -31.77543 -30.22107 -30.14193 -28.44148 -25.68972 -24.69447 -23.65517 -21.94709 -21.50326 -20.13028 -18.13276 -17.89292 -16.96402 -15.98430 -15.32375 -14.85958 -14.55804 -14.42898 -14.08753 -13.97937 -13.56949 -13.52012 -13.24891 -12.84908 -12.67043 -12.33423 -12.20418 -11.89389 -11.65573 -11.35154 -11.34471 -11.18875 -11.00870 -10.81579 -10.69028 -10.61188 -10.43765 -10.35029 -10.20368 -9.32281 -8.83104 -8.36263 -8.15080 -7.16999 -6.44577 -4.03419 2.24189 2.26257 2.73926 2.77728 3.12700 3.13784 3.18564 3.96968 4.10601 4.34667 4.64970 4.71580 4.90593 5.10469 5.22399 5.27872 5.30246 5.37428 5.40854 5.46475 5.50113 5.66642 5.74119 5.83516 5.88693 5.91955 5.96703 5.98600 6.15742 6.22967 6.42404 6.46453 6.72642 6.91050 7.01292 7.09165 7.28085 7.34901 7.44561 7.48238 7.55594 7.84805 8.00554 9.01107 9.71672 10.73491 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031020 B = 0.003399 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.433400 B = 8235.073950 C = 8556.431652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C 0.219 3.781 4 C -0.180 4.180 5 C -0.107 4.107 6 C -0.144 4.144 7 N -0.668 5.668 8 C 0.113 3.887 9 C -0.184 4.184 10 C -0.051 4.051 11 C -0.194 4.194 12 C 0.156 3.844 13 O -0.178 6.178 14 C -0.392 4.392 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.268 1.268 22 C -0.235 4.235 23 C -0.065 4.065 24 H 0.215 0.785 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.345 0.655 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.270 0.730 39 H 0.125 0.875 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 14.804 -10.816 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.161 4.161 3 C 0.128 3.872 4 C -0.239 4.239 5 C -0.144 4.144 6 C -0.202 4.202 7 N -0.299 5.299 8 C -0.014 4.014 9 C -0.185 4.185 10 C -0.070 4.070 11 C -0.214 4.214 12 C 0.102 3.898 13 O -0.081 6.081 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.254 4.254 23 C -0.084 4.084 24 H 0.232 0.768 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.164 0.836 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.390 14.931 -9.774 19.315 hybrid contribution -0.038 -1.251 -1.435 1.904 sum -7.428 13.680 -11.209 19.182 Atomic orbital electron populations 1.24849 0.95797 1.00303 1.01438 1.22691 0.93660 1.00338 0.99416 1.17900 0.84120 0.93461 0.91677 1.22538 1.02136 1.02611 0.96602 1.21584 1.00861 0.94729 0.97271 1.21668 1.01486 1.01733 0.95278 1.60749 1.08632 1.04877 1.55655 1.20750 0.86243 0.97160 0.97287 1.19090 1.10446 0.94625 0.94372 1.20456 0.96682 0.97012 0.92863 1.20228 1.09713 0.91616 0.99824 1.19403 0.91145 0.88847 0.90369 1.83981 1.72211 1.14819 1.37138 1.21321 1.49534 0.82211 0.93752 0.89103 1.25289 0.96569 0.98950 0.95712 1.70044 1.43473 1.29621 1.06619 0.85718 0.78899 0.80089 0.78761 1.19893 1.20239 1.19214 1.21113 1.10200 0.99820 0.94274 1.20588 0.97532 0.92275 0.98029 0.76770 0.91910 0.91105 0.92217 0.91092 0.91884 0.90771 0.93570 0.93066 0.83603 0.94873 0.90593 0.87081 0.86589 0.92027 0.85690 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.13 19.25 29.55 0.57 -1.56 16 2 C -0.16 -1.87 10.99 -37.12 -0.41 -2.27 16 3 C 0.22 2.38 0.59 -134.39 -0.08 2.30 16 4 C -0.18 -1.69 8.19 37.15 0.30 -1.39 16 5 C -0.11 -1.06 4.41 -26.73 -0.12 -1.18 16 6 C -0.14 -1.55 9.49 37.16 0.35 -1.20 16 7 N -0.67 -8.38 5.09 -104.09 -0.53 -8.91 16 8 C 0.11 1.45 4.89 -4.98 -0.02 1.43 16 9 C -0.18 -3.05 5.40 -104.57 -0.56 -3.61 16 10 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 11 C -0.19 -4.13 9.99 -39.40 -0.39 -4.52 16 12 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 13 O -0.18 -5.12 9.76 0.04 0.00 -5.12 16 14 C -0.39 -11.00 9.49 30.89 0.29 -10.70 16 15 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 18 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 C -0.23 -5.07 9.17 -39.40 -0.36 -5.44 16 23 C -0.07 -1.17 9.69 -39.61 -0.38 -1.56 16 24 H 0.22 1.48 7.80 -54.09 -0.42 1.06 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.63 6.41 -51.93 -0.33 0.30 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.66 6.68 -51.93 -0.35 0.31 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.91 7.28 -51.93 -0.38 0.54 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.58 7.38 -51.93 -0.38 0.20 16 33 H 0.35 4.54 8.69 -39.29 -0.34 4.20 16 34 H 0.03 0.39 6.25 -51.93 -0.32 0.07 16 35 H 0.08 0.92 6.27 -51.93 -0.33 0.59 16 36 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 40 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 335.43 15.07 5.05 5.05 Total: -1.00 -30.43 335.43 -6.81 -37.24 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.52 Total: 7.34 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -1.55 Total: -26.50 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.23 Total: -33.55 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.43 -6.81 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384139324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.332 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds