Wall clock time and date at job start Mon Mar 30 2020 01:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47206 * 2 1 4 4 C 1.37977 * 120.07451 * 257.01788 * 3 2 1 5 5 C 1.38345 * 120.14267 * 179.97438 * 4 3 2 6 6 C 1.38372 * 120.29249 * 359.97438 * 5 4 3 7 7 C 1.37940 * 120.14916 * 359.97438 * 6 5 4 8 8 C 1.39559 * 120.06992 * 77.25521 * 3 2 1 9 9 C 1.47842 * 120.14825 * 0.02562 * 8 3 2 10 10 O 1.21553 * 120.00270 * 5.99930 * 9 8 3 11 11 N 1.34779 * 119.99913 * 186.00603 * 9 8 3 12 12 C 1.46507 * 119.99862 * 185.38708 * 11 9 8 13 13 C 1.52996 * 109.47014 * 175.00990 * 12 11 9 14 14 C 1.50702 * 115.54778 * 306.50487 * 13 12 11 15 15 H 1.08001 * 120.00121 * 144.21258 * 14 13 12 16 16 C 1.37877 * 120.00346 * 324.20483 * 14 13 12 17 17 N 1.31520 * 119.99875 * 2.52224 * 16 14 13 18 18 Si 1.86800 * 120.00087 * 182.51959 * 16 14 13 19 19 H 1.48498 * 109.47264 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46948 * 120.00381 * 18 16 14 21 21 H 1.48494 * 109.47138 * 240.00228 * 18 16 14 22 22 C 1.53001 * 117.49935 * 160.83527 * 13 12 11 23 23 C 1.52997 * 117.50006 * 92.17513 * 13 12 11 24 24 H 1.09000 * 109.47107 * 59.99691 * 1 2 3 25 25 H 1.09004 * 109.47081 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47147 * 299.99998 * 1 2 3 27 27 H 1.09003 * 109.47147 * 240.00002 * 2 1 3 28 28 H 1.09000 * 109.47107 * 120.00309 * 2 1 3 29 29 H 1.07995 * 119.92676 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.84762 * 180.02562 * 5 4 3 31 31 H 1.08002 * 119.92941 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.07618 * 180.02562 * 7 6 5 33 33 H 0.96992 * 120.00249 * 5.39455 * 11 9 8 34 34 H 1.09000 * 109.47331 * 295.01605 * 12 11 9 35 35 H 1.09002 * 109.46702 * 55.01214 * 12 11 9 36 36 H 0.96995 * 119.99943 * 185.00302 * 17 16 14 37 37 H 1.08998 * 117.49257 * 359.97438 * 22 13 12 38 38 H 1.08997 * 117.49697 * 145.01449 * 22 13 12 39 39 H 1.08997 * 117.50227 * 214.97884 * 23 13 12 40 40 H 1.09001 * 117.49425 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.5157 1.9832 -1.1635 5 6 2.9767 3.2876 -1.1652 6 6 2.9560 4.0368 -0.0020 7 6 2.4744 3.4868 1.1677 8 6 2.0142 2.1689 1.1780 9 6 1.5031 1.5707 2.4297 10 8 1.1996 0.3941 2.4614 11 7 1.3735 2.3301 3.5356 12 6 0.9801 1.7139 4.8053 13 6 1.0271 2.7634 5.9176 14 6 2.3297 3.5091 6.0529 15 1 2.3281 4.5530 6.3300 16 6 3.5235 2.8587 5.8233 17 7 3.5238 1.6013 5.4378 18 14 5.1406 3.7636 6.0595 19 1 4.8691 5.1573 6.4942 20 1 5.9487 3.0710 7.0952 21 1 5.8896 3.7815 4.7774 22 6 0.2444 2.4701 7.1991 23 6 -0.2613 3.5316 6.2189 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.5342 1.4040 -2.0748 30 1 3.3537 3.7233 -2.0787 31 1 3.3170 5.0546 -0.0101 32 1 2.4584 4.0727 2.0749 33 1 1.5405 3.2845 3.4909 34 1 -0.0326 1.3201 4.7197 35 1 1.6669 0.9016 5.0430 36 1 4.3622 1.1223 5.3464 37 1 -0.3042 1.5297 7.2495 38 1 0.6715 2.8168 8.1401 39 1 -0.1668 4.5761 6.5155 40 1 -1.1423 3.2895 5.6244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404147182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:20 Heat of formation + Delta-G solvation = 7.797635 kcal Electronic energy + Delta-G solvation = -21326.500159 eV Core-core repulsion = 18299.676000 eV Total energy + Delta-G solvation = -3026.824159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.85624 -37.83639 -36.58398 -34.05959 -32.73716 -32.18713 -30.80252 -29.16732 -26.14273 -25.39002 -23.57616 -22.95233 -21.27768 -20.72715 -19.58675 -19.20626 -17.33464 -16.19798 -15.58833 -15.26419 -14.86907 -14.51619 -14.45760 -14.14870 -13.70800 -13.44755 -13.18420 -12.95591 -12.67144 -12.28541 -11.93036 -11.72557 -11.49895 -11.38462 -11.29283 -11.13156 -10.75192 -10.67827 -10.53233 -10.47962 -10.24549 -9.68749 -9.04883 -8.85987 -8.76997 -8.70260 -8.47808 -8.29490 -7.77805 -6.03518 -4.21849 1.22694 1.57850 3.19074 3.29748 3.31505 3.50155 4.12847 4.27585 4.36314 4.93808 4.97166 5.05306 5.14103 5.36879 5.45484 5.49555 5.70665 5.74663 5.83815 5.85721 6.00165 6.11420 6.20231 6.26785 6.29541 6.50592 6.52731 6.57415 6.60190 6.63038 6.67511 6.71147 6.87252 6.93406 7.09032 7.15815 7.24619 7.55952 7.67759 7.94266 8.28746 8.59693 8.81177 9.21019 9.41815 10.87499 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.006646 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.385494 B = 4212.281483 C = 5065.469914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.091 4.091 3 C -0.027 4.027 4 C -0.135 4.135 5 C -0.104 4.104 6 C -0.137 4.137 7 C -0.082 4.082 8 C -0.121 4.121 9 C 0.548 3.452 10 O -0.550 6.550 11 N -0.676 5.676 12 C 0.167 3.833 13 C 0.034 3.966 14 C -0.497 4.497 15 H 0.061 0.939 16 C 0.075 3.925 17 N -0.866 5.866 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.198 4.198 23 C -0.213 4.213 24 H 0.039 0.961 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.396 0.604 34 H 0.019 0.981 35 H 0.115 0.885 36 H 0.262 0.738 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 2.160 -10.934 11.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.128 4.128 3 C -0.028 4.028 4 C -0.153 4.153 5 C -0.122 4.122 6 C -0.155 4.155 7 C -0.101 4.101 8 C -0.124 4.124 9 C 0.334 3.666 10 O -0.432 6.432 11 N -0.322 5.322 12 C 0.044 3.956 13 C 0.034 3.966 14 C -0.534 4.534 15 H 0.079 0.921 16 C -0.129 4.129 17 N -0.502 5.502 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.236 4.236 23 C -0.250 4.250 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.230 0.770 34 H 0.038 0.962 35 H 0.133 0.867 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.234 1.191 -10.962 11.251 hybrid contribution 1.097 1.094 0.283 1.574 sum -1.137 2.285 -10.679 10.980 Atomic orbital electron populations 1.21591 0.94738 1.01290 1.01304 1.20765 0.96608 0.92082 1.03324 1.20058 0.94783 0.96291 0.91656 1.20985 1.01188 0.95614 0.97548 1.21218 0.98636 0.94334 0.97997 1.21041 1.01480 1.00189 0.92833 1.21466 0.95930 0.94232 0.98494 1.20112 1.03212 0.94595 0.94491 1.18026 0.78933 0.86299 0.83338 1.90619 1.51630 1.15967 1.84981 1.45583 1.66628 1.11322 1.08665 1.21075 0.96764 0.97268 0.80503 1.19261 0.90041 0.95273 0.92050 1.20536 0.88687 0.96537 1.47634 0.92076 1.24988 0.99026 0.95116 0.93811 1.69878 1.26556 1.09184 1.44553 0.86562 0.83728 0.79988 0.77963 1.19728 1.20854 1.20870 1.22930 1.06485 0.98008 0.96196 1.22962 0.99821 0.96453 1.05768 0.94188 0.92958 0.91746 0.92710 0.87534 0.86023 0.86212 0.85904 0.85215 0.76971 0.96238 0.86710 0.92731 0.91460 0.90219 0.90634 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.40 37.16 0.35 -1.65 16 2 C -0.09 -1.44 5.35 -27.89 -0.15 -1.59 16 3 C -0.03 -0.44 5.18 -104.23 -0.54 -0.98 16 4 C -0.14 -1.83 9.66 -39.64 -0.38 -2.21 16 5 C -0.10 -1.29 10.04 -39.49 -0.40 -1.69 16 6 C -0.14 -1.86 10.03 -39.64 -0.40 -2.26 16 7 C -0.08 -1.33 9.51 -39.18 -0.37 -1.70 16 8 C -0.12 -2.20 5.86 -104.97 -0.61 -2.81 16 9 C 0.55 11.58 7.28 -12.33 -0.09 11.49 16 10 O -0.55 -12.64 11.81 5.32 0.06 -12.58 16 11 N -0.68 -14.55 4.99 -61.25 -0.31 -14.86 16 12 C 0.17 3.91 4.62 -4.04 -0.02 3.89 16 13 C 0.03 0.80 2.03 -155.66 -0.32 0.49 16 14 C -0.50 -12.43 8.40 -34.44 -0.29 -12.72 16 15 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 16 C 0.08 1.90 5.29 -17.82 -0.09 1.81 16 17 N -0.87 -22.86 10.22 55.43 0.57 -22.30 16 18 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.20 -4.28 9.96 -26.69 -0.27 -4.54 16 23 C -0.21 -4.38 9.92 -26.70 -0.26 -4.65 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.13 6.36 -51.93 -0.33 0.80 16 27 H 0.05 0.72 7.97 -51.93 -0.41 0.31 16 28 H 0.11 1.99 5.96 -51.93 -0.31 1.68 16 29 H 0.12 1.34 8.01 -52.49 -0.42 0.92 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.13 2.05 6.49 -52.49 -0.34 1.71 16 33 H 0.40 8.10 6.20 -40.82 -0.25 7.85 16 34 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.12 3.07 5.97 -51.93 -0.31 2.76 16 36 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -27.35 326.55 -9.35 -36.70 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.73 Total: 12.28 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -3.84 Total: -19.12 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.26 Total: -37.16 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.06 Total: -12.58 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.35 -9.35 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404147182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.496 kcal (2) G-P(sol) polarization free energy of solvation -27.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds