Wall clock time and date at job start Mon Mar 30 2020 01:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47206 * 2 1 4 4 C 1.37977 * 120.07451 * 257.01788 * 3 2 1 5 5 C 1.38345 * 120.14267 * 179.97438 * 4 3 2 6 6 C 1.38372 * 120.29249 * 359.97438 * 5 4 3 7 7 C 1.37940 * 120.14916 * 359.97438 * 6 5 4 8 8 C 1.39559 * 120.06992 * 77.25521 * 3 2 1 9 9 C 1.47842 * 120.14825 * 0.02562 * 8 3 2 10 10 O 1.21553 * 120.00270 * 5.99930 * 9 8 3 11 11 N 1.34779 * 119.99913 * 186.00603 * 9 8 3 12 12 C 1.46507 * 119.99862 * 185.38708 * 11 9 8 13 13 C 1.52996 * 109.47014 * 175.00990 * 12 11 9 14 14 C 1.50702 * 115.54778 * 306.50487 * 13 12 11 15 15 H 1.08001 * 120.00121 * 144.21258 * 14 13 12 16 16 C 1.37877 * 120.00346 * 324.20483 * 14 13 12 17 17 N 1.31520 * 119.99875 * 2.52224 * 16 14 13 18 18 Si 1.86800 * 120.00087 * 182.51959 * 16 14 13 19 19 H 1.48498 * 109.47264 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46948 * 120.00381 * 18 16 14 21 21 H 1.48494 * 109.47138 * 240.00228 * 18 16 14 22 22 C 1.53001 * 117.49935 * 160.83527 * 13 12 11 23 23 C 1.52997 * 117.50006 * 92.17513 * 13 12 11 24 24 H 1.09000 * 109.47107 * 59.99691 * 1 2 3 25 25 H 1.09004 * 109.47081 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47147 * 299.99998 * 1 2 3 27 27 H 1.09003 * 109.47147 * 240.00002 * 2 1 3 28 28 H 1.09000 * 109.47107 * 120.00309 * 2 1 3 29 29 H 1.07995 * 119.92676 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.84762 * 180.02562 * 5 4 3 31 31 H 1.08002 * 119.92941 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.07618 * 180.02562 * 7 6 5 33 33 H 0.96992 * 120.00249 * 5.39455 * 11 9 8 34 34 H 1.09000 * 109.47331 * 295.01605 * 12 11 9 35 35 H 1.09002 * 109.46702 * 55.01214 * 12 11 9 36 36 H 0.96995 * 119.99943 * 185.00302 * 17 16 14 37 37 H 1.08998 * 117.49257 * 359.97438 * 22 13 12 38 38 H 1.08997 * 117.49697 * 145.01449 * 22 13 12 39 39 H 1.08997 * 117.50227 * 214.97884 * 23 13 12 40 40 H 1.09001 * 117.49425 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.5157 1.9832 -1.1635 5 6 2.9767 3.2876 -1.1652 6 6 2.9560 4.0368 -0.0020 7 6 2.4744 3.4868 1.1677 8 6 2.0142 2.1689 1.1780 9 6 1.5031 1.5707 2.4297 10 8 1.1996 0.3941 2.4614 11 7 1.3735 2.3301 3.5356 12 6 0.9801 1.7139 4.8053 13 6 1.0271 2.7634 5.9176 14 6 2.3297 3.5091 6.0529 15 1 2.3281 4.5530 6.3300 16 6 3.5235 2.8587 5.8233 17 7 3.5238 1.6013 5.4378 18 14 5.1406 3.7636 6.0595 19 1 4.8691 5.1573 6.4942 20 1 5.9487 3.0710 7.0952 21 1 5.8896 3.7815 4.7774 22 6 0.2444 2.4701 7.1991 23 6 -0.2613 3.5316 6.2189 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.5342 1.4040 -2.0748 30 1 3.3537 3.7233 -2.0787 31 1 3.3170 5.0546 -0.0101 32 1 2.4584 4.0727 2.0749 33 1 1.5405 3.2845 3.4909 34 1 -0.0326 1.3201 4.7197 35 1 1.6669 0.9016 5.0430 36 1 4.3622 1.1223 5.3464 37 1 -0.3042 1.5297 7.2495 38 1 0.6715 2.8168 8.1401 39 1 -0.1668 4.5761 6.5155 40 1 -1.1423 3.2895 5.6244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404147182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:20 Heat of formation + Delta-G solvation = -5.752411 kcal Electronic energy + Delta-G solvation = -21327.087733 eV Core-core repulsion = 18299.676000 eV Total energy + Delta-G solvation = -3027.411733 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23671 -39.32296 -38.28512 -35.43876 -34.31854 -34.04686 -32.04363 -30.33431 -27.91550 -27.23700 -24.87445 -24.16043 -22.98628 -21.98137 -21.19770 -20.92720 -18.87427 -17.89188 -16.89223 -16.75701 -16.56480 -16.04017 -15.91895 -15.65705 -15.25566 -14.79196 -14.57664 -14.47326 -13.94802 -13.80358 -13.50113 -13.30907 -13.07198 -12.96704 -12.60653 -12.55548 -12.42302 -12.29644 -12.06908 -11.92829 -11.67035 -11.48492 -10.90138 -10.69912 -10.37488 -10.12468 -9.92342 -9.69263 -9.46241 -7.96722 -6.20666 0.01486 0.45926 1.39034 1.44700 1.53363 2.12013 2.39966 2.58115 2.99449 3.08753 3.62718 3.86116 3.91704 4.00351 4.19249 4.27193 4.37322 4.52279 4.56052 4.59673 4.63567 4.67426 4.74720 4.80366 4.94736 4.97188 5.01424 5.12507 5.15052 5.28899 5.32125 5.40955 5.46291 5.52003 5.54246 5.59494 5.74162 5.94374 5.96983 6.04986 6.36533 6.78532 7.00366 7.44548 7.57118 8.91413 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.006646 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.385494 B = 4212.281483 C = 5065.469914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.042 4.042 4 C -0.131 4.131 5 C -0.089 4.089 6 C -0.135 4.135 7 C -0.096 4.096 8 C -0.153 4.153 9 C 0.540 3.460 10 O -0.579 6.579 11 N -0.677 5.677 12 C 0.180 3.820 13 C 0.005 3.995 14 C -0.502 4.502 15 H 0.059 0.941 16 C 0.036 3.964 17 N -0.889 5.889 18 Si 0.946 3.054 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.284 1.284 22 C -0.198 4.198 23 C -0.187 4.187 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.154 0.846 30 H 0.163 0.837 31 H 0.153 0.847 32 H 0.123 0.877 33 H 0.399 0.601 34 H 0.015 0.985 35 H 0.079 0.921 36 H 0.255 0.745 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.688 3.919 -13.288 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.126 4.126 3 C -0.043 4.043 4 C -0.149 4.149 5 C -0.106 4.106 6 C -0.153 4.153 7 C -0.115 4.115 8 C -0.156 4.156 9 C 0.329 3.671 10 O -0.462 6.462 11 N -0.324 5.324 12 C 0.056 3.944 13 C 0.004 3.996 14 C -0.539 4.539 15 H 0.077 0.923 16 C -0.165 4.165 17 N -0.526 5.526 18 Si 0.773 3.227 19 H -0.189 1.189 20 H -0.214 1.214 21 H -0.210 1.210 22 C -0.236 4.236 23 C -0.224 4.224 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.172 0.828 30 H 0.180 0.820 31 H 0.170 0.830 32 H 0.140 0.860 33 H 0.234 0.766 34 H 0.033 0.967 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.770 2.975 -13.314 13.756 hybrid contribution 0.929 0.557 0.959 1.446 sum -0.841 3.532 -12.355 12.877 Atomic orbital electron populations 1.21520 0.94507 1.01612 1.00651 1.20693 0.96865 0.92215 1.02835 1.20244 0.95587 0.96324 0.92186 1.21358 0.99723 0.96415 0.97409 1.21726 0.96320 0.93568 0.99025 1.21415 1.00250 1.01597 0.92046 1.21534 0.96798 0.93522 0.99682 1.19993 1.05923 0.96028 0.93694 1.18651 0.78148 0.86033 0.84272 1.90598 1.52775 1.17182 1.85676 1.45518 1.67086 1.11464 1.08306 1.20707 0.95360 0.96575 0.81715 1.19316 0.90872 0.96433 0.92941 1.20708 0.89579 0.96433 1.47175 0.92311 1.25576 1.01588 0.95577 0.93798 1.70072 1.26477 1.10367 1.45733 0.85688 0.80417 0.79217 0.77426 1.18875 1.21372 1.20999 1.22949 1.06127 0.98963 0.95592 1.22952 0.98590 0.96553 1.04345 0.91975 0.92183 0.95044 0.89724 0.91333 0.82800 0.81975 0.82979 0.85957 0.76570 0.96705 0.90360 0.93502 0.90670 0.90333 0.89657 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.40 71.98 0.68 -3.12 16 2 C -0.09 -2.80 5.35 29.85 0.16 -2.64 16 3 C -0.04 -1.34 5.18 -19.61 -0.10 -1.44 16 4 C -0.13 -3.08 9.66 22.23 0.21 -2.87 16 5 C -0.09 -1.81 10.04 22.33 0.22 -1.58 16 6 C -0.14 -3.23 10.03 22.23 0.22 -3.01 16 7 C -0.10 -3.06 9.51 22.53 0.21 -2.85 16 8 C -0.15 -5.65 5.86 -20.09 -0.12 -5.77 16 9 C 0.54 24.05 7.28 86.79 0.63 24.68 16 10 O -0.58 -28.37 11.81 -3.88 -0.05 -28.42 16 11 N -0.68 -30.49 4.99 -465.96 -2.33 -32.82 16 12 C 0.18 8.82 4.62 86.38 0.40 9.22 16 13 C 0.01 0.24 2.03 -52.93 -0.11 0.13 16 14 C -0.50 -25.30 8.40 25.60 0.22 -25.09 16 15 H 0.06 2.94 7.81 -2.91 -0.02 2.91 16 16 C 0.04 1.86 5.29 84.65 0.45 2.31 16 17 N -0.89 -48.66 10.22 21.45 0.22 -48.44 16 18 Si 0.95 41.37 29.54 68.60 2.03 43.39 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 C -0.20 -8.52 9.96 30.62 0.30 -8.22 16 23 C -0.19 -7.53 9.92 30.62 0.30 -7.23 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.03 1.14 6.36 -2.39 -0.02 1.12 16 27 H 0.08 2.08 7.97 -2.39 -0.02 2.07 16 28 H 0.07 2.69 5.96 -2.39 -0.01 2.68 16 29 H 0.15 2.60 8.01 -2.91 -0.02 2.57 16 30 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.12 3.92 6.49 -2.91 -0.02 3.91 16 33 H 0.40 16.98 6.20 -92.71 -0.57 16.41 16 34 H 0.01 0.72 8.08 -2.39 -0.02 0.70 16 35 H 0.08 4.44 5.97 -2.39 -0.01 4.43 16 36 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 37 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -61.48 326.55 4.03 -57.46 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.46 Total: 36.29 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 3.69 Total: -27.47 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -2.11 Total: -81.26 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.05 Total: -28.42 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -61.48 4.03 -57.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404147182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.707 kcal (2) G-P(sol) polarization free energy of solvation -61.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds