Wall clock time and date at job start Mon Mar 30 2020 01:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47187 * 2 1 4 4 C 1.38355 * 119.85374 * 90.00352 * 3 2 1 5 5 C 1.37952 * 120.14708 * 180.02562 * 4 3 2 6 6 C 1.39576 * 119.85059 * 0.28115 * 5 4 3 7 7 C 1.47847 * 120.14289 * 179.72380 * 6 5 4 8 8 O 1.21548 * 120.00325 * 354.80659 * 7 6 5 9 9 N 1.34779 * 119.99786 * 174.80816 * 7 6 5 10 10 C 1.46503 * 119.99656 * 185.69006 * 9 7 6 11 11 C 1.53006 * 109.47116 * 183.71335 * 10 9 7 12 12 C 1.50700 * 115.54666 * 306.46511 * 11 10 9 13 13 H 1.08007 * 119.99729 * 145.12092 * 12 11 10 14 14 C 1.37878 * 120.00244 * 325.11667 * 12 11 10 15 15 N 1.31511 * 120.00035 * 349.36221 * 14 12 11 16 16 Si 1.86798 * 119.99855 * 169.36260 * 14 12 11 17 17 H 1.48500 * 109.47398 * 60.00144 * 16 14 12 18 18 H 1.48508 * 109.46836 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47370 * 299.99736 * 16 14 12 20 20 C 1.52993 * 117.49973 * 160.79151 * 11 10 9 21 21 C 1.52998 * 117.49867 * 92.13111 * 11 10 9 22 22 C 1.39576 * 119.71299 * 359.46017 * 6 5 4 23 23 C 1.37963 * 119.84939 * 0.52041 * 22 6 5 24 24 H 1.09002 * 109.47318 * 59.99722 * 1 2 3 25 25 H 1.08995 * 109.47240 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47160 * 299.99952 * 1 2 3 27 27 H 1.09004 * 109.46428 * 240.00185 * 2 1 3 28 28 H 1.08993 * 109.46749 * 120.00439 * 2 1 3 29 29 H 1.08009 * 119.92782 * 0.04162 * 4 3 2 30 30 H 1.07999 * 120.07720 * 179.97438 * 5 4 3 31 31 H 0.96994 * 120.00650 * 5.68943 * 9 7 6 32 32 H 1.08997 * 109.47299 * 303.71149 * 10 9 7 33 33 H 1.09001 * 109.47162 * 63.71689 * 10 9 7 34 34 H 0.96997 * 120.00161 * 185.03453 * 15 14 12 35 35 H 1.08998 * 117.50085 * 0.02562 * 20 11 10 36 36 H 1.09004 * 117.49667 * 145.01723 * 20 11 10 37 37 H 1.08999 * 117.49684 * 214.98439 * 21 11 10 38 38 H 1.08998 * 117.49902 * 359.97438 * 21 11 10 39 39 H 1.08001 * 120.07373 * 180.23270 * 22 6 5 40 40 H 1.07995 * 119.92660 * 179.74373 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2620 2.0701 1.2000 5 6 2.7214 3.3709 1.2070 6 6 2.9488 4.0339 0.0000 7 6 3.4353 5.4300 0.0001 8 8 3.5480 6.0344 1.0486 9 7 3.7537 6.0327 -1.1626 10 6 4.3525 7.3698 -1.1546 11 6 4.5288 7.8583 -2.5939 12 6 5.2839 6.9281 -3.5080 13 1 5.0097 6.8547 -4.5501 14 6 6.3249 6.1708 -3.0141 15 7 6.7962 6.4072 -1.8093 16 14 7.0657 4.8090 -4.0563 17 1 7.6067 5.3860 -5.3131 18 1 8.1617 4.1490 -3.3021 19 1 6.0174 3.8088 -4.3818 20 6 4.7063 9.3620 -2.8127 21 6 3.3927 8.6809 -3.2048 22 6 2.7203 3.3713 -1.2070 23 6 2.2613 2.0703 -1.2000 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.0815 1.5573 2.1333 30 1 2.8998 3.8768 2.1443 31 1 3.5864 5.5813 -2.0047 32 1 3.7005 8.0567 -0.6151 33 1 5.3245 7.3296 -0.6630 34 1 7.5747 5.9248 -1.4898 35 1 4.6978 10.0033 -1.9315 36 1 5.3690 9.6786 -3.6182 37 1 3.1917 8.5496 -4.2681 38 1 2.5195 8.8738 -2.5816 39 1 2.8980 3.8775 -2.1443 40 1 2.0802 1.5578 -2.1332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404177554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:24 Heat of formation + Delta-G solvation = -1.808161 kcal Electronic energy + Delta-G solvation = -20671.091594 eV Core-core repulsion = 17643.850896 eV Total energy + Delta-G solvation = -3027.240698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.73528 -38.17190 -36.62654 -34.06625 -33.13605 -32.21229 -30.75570 -29.60168 -26.22972 -25.43317 -24.01551 -22.41389 -21.48367 -21.17670 -19.53599 -19.30116 -17.53565 -16.20349 -15.68816 -15.32302 -14.85075 -14.63401 -14.39340 -14.27840 -13.70139 -13.58604 -13.48530 -13.26294 -12.93736 -12.59706 -12.24304 -11.93796 -11.67730 -11.44837 -11.31599 -11.08307 -11.03484 -10.84511 -10.77288 -10.53403 -10.29234 -9.68047 -9.21070 -9.07061 -8.84848 -8.83227 -8.58544 -8.26902 -7.84710 -6.10029 -4.20952 1.12196 1.53622 3.19343 3.28033 3.28303 3.37188 4.04424 4.25290 4.29528 4.67484 4.78798 4.91579 5.08255 5.11868 5.21178 5.39080 5.43722 5.49491 5.53535 5.61987 5.73552 5.87922 5.97420 6.01254 6.08930 6.14270 6.29667 6.49064 6.53771 6.60777 6.62006 6.64842 6.70477 6.89835 7.04741 7.07510 7.26423 7.52709 7.56444 7.88950 8.29325 8.50877 8.78924 9.09001 9.40088 10.86574 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.005314 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.557454 B = 5268.061633 C = 5977.223961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.071 4.071 4 C -0.130 4.130 5 C -0.063 4.063 6 C -0.123 4.123 7 C 0.544 3.456 8 O -0.562 6.562 9 N -0.681 5.681 10 C 0.161 3.839 11 C 0.038 3.962 12 C -0.503 4.503 13 H 0.062 0.938 14 C 0.077 3.923 15 N -0.866 5.866 16 Si 0.889 3.111 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.195 4.195 21 C -0.212 4.212 22 C -0.083 4.083 23 C -0.127 4.127 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.400 0.600 32 H 0.029 0.971 33 H 0.110 0.890 34 H 0.265 0.735 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.130 0.870 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.428 -10.813 2.142 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.071 4.071 4 C -0.148 4.148 5 C -0.082 4.082 6 C -0.126 4.126 7 C 0.330 3.670 8 O -0.443 6.443 9 N -0.328 5.328 10 C 0.038 3.962 11 C 0.037 3.963 12 C -0.540 4.540 13 H 0.080 0.920 14 C -0.128 4.128 15 N -0.501 5.501 16 Si 0.716 3.284 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.234 4.234 21 C -0.249 4.249 22 C -0.102 4.102 23 C -0.145 4.145 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.235 0.765 32 H 0.047 0.953 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.148 0.852 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.193 -10.464 3.020 14.253 hybrid contribution 0.510 -0.764 -1.093 1.428 sum -8.684 -11.228 1.927 14.325 Atomic orbital electron populations 1.21747 0.94700 1.01544 1.02384 1.20567 0.96182 0.92716 1.02853 1.20023 0.97804 0.96006 0.93272 1.20939 1.01514 0.94842 0.97496 1.21247 0.95194 0.93849 0.97921 1.20222 1.03077 0.95197 0.94105 1.18161 0.78653 0.85706 0.84467 1.90684 1.55942 1.65981 1.31707 1.45739 1.60126 1.19424 1.07538 1.21051 0.98550 0.80186 0.96377 1.19179 0.95014 0.89403 0.92717 1.20453 1.16232 1.22367 0.94947 0.92004 1.24970 0.96304 0.96783 0.94760 1.69831 1.22405 1.40866 1.17020 0.86700 0.78994 0.82338 0.80345 1.20173 1.21154 1.19922 1.22914 0.99332 0.99476 1.01659 1.22965 0.91955 1.10054 0.99966 1.21443 0.96363 0.94686 0.97678 1.20937 1.01139 0.94817 0.97590 0.92442 0.92518 0.92503 0.90982 0.91034 0.85891 0.84891 0.76468 0.95319 0.87284 0.92479 0.91484 0.90185 0.90607 0.91342 0.85208 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.09 -0.78 6.06 -27.88 -0.17 -0.95 16 3 C -0.07 -0.86 5.14 -104.54 -0.54 -1.40 16 4 C -0.13 -1.68 9.68 -39.64 -0.38 -2.07 16 5 C -0.06 -1.01 9.59 -39.19 -0.38 -1.38 16 6 C -0.12 -2.21 5.87 -104.97 -0.62 -2.82 16 7 C 0.54 11.79 7.76 -12.33 -0.10 11.70 16 8 O -0.56 -13.78 16.35 5.32 0.09 -13.70 16 9 N -0.68 -14.91 5.22 -61.25 -0.32 -15.23 16 10 C 0.16 3.85 4.75 -4.04 -0.02 3.83 16 11 C 0.04 0.89 2.00 -155.66 -0.31 0.58 16 12 C -0.50 -12.66 8.27 -34.44 -0.28 -12.95 16 13 H 0.06 1.55 7.84 -52.48 -0.41 1.14 16 14 C 0.08 1.96 5.12 -17.82 -0.09 1.86 16 15 N -0.87 -23.14 10.75 55.43 0.60 -22.55 16 16 Si 0.89 19.87 29.55 -169.99 -5.02 14.84 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 20 C -0.20 -4.30 9.96 -26.70 -0.27 -4.57 16 21 C -0.21 -4.43 9.92 -26.70 -0.26 -4.69 16 22 C -0.08 -1.30 9.54 -39.18 -0.37 -1.68 16 23 C -0.13 -1.67 9.68 -39.64 -0.38 -2.06 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.13 2.12 7.66 -52.49 -0.40 1.72 16 31 H 0.40 8.28 5.98 -40.82 -0.24 8.04 16 32 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.11 2.95 6.04 -51.93 -0.31 2.64 16 34 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.13 1.97 6.42 -52.49 -0.34 1.64 16 40 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -28.54 336.03 -9.31 -37.85 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.91 Total: 11.14 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -3.80 Total: -17.42 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.28 Total: -37.78 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.54 -9.31 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404177554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.044 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds