Wall clock time and date at job start Mon Mar 30 2020 01:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47187 * 2 1 4 4 C 1.38355 * 119.85374 * 90.00352 * 3 2 1 5 5 C 1.37952 * 120.14708 * 180.02562 * 4 3 2 6 6 C 1.39576 * 119.85059 * 0.28115 * 5 4 3 7 7 C 1.47847 * 120.14289 * 179.72380 * 6 5 4 8 8 O 1.21548 * 120.00325 * 354.80659 * 7 6 5 9 9 N 1.34779 * 119.99786 * 174.80816 * 7 6 5 10 10 C 1.46503 * 119.99656 * 185.69006 * 9 7 6 11 11 C 1.53006 * 109.47116 * 183.71335 * 10 9 7 12 12 C 1.50700 * 115.54666 * 306.46511 * 11 10 9 13 13 H 1.08007 * 119.99729 * 145.12092 * 12 11 10 14 14 C 1.37878 * 120.00244 * 325.11667 * 12 11 10 15 15 N 1.31511 * 120.00035 * 349.36221 * 14 12 11 16 16 Si 1.86798 * 119.99855 * 169.36260 * 14 12 11 17 17 H 1.48500 * 109.47398 * 60.00144 * 16 14 12 18 18 H 1.48508 * 109.46836 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47370 * 299.99736 * 16 14 12 20 20 C 1.52993 * 117.49973 * 160.79151 * 11 10 9 21 21 C 1.52998 * 117.49867 * 92.13111 * 11 10 9 22 22 C 1.39576 * 119.71299 * 359.46017 * 6 5 4 23 23 C 1.37963 * 119.84939 * 0.52041 * 22 6 5 24 24 H 1.09002 * 109.47318 * 59.99722 * 1 2 3 25 25 H 1.08995 * 109.47240 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47160 * 299.99952 * 1 2 3 27 27 H 1.09004 * 109.46428 * 240.00185 * 2 1 3 28 28 H 1.08993 * 109.46749 * 120.00439 * 2 1 3 29 29 H 1.08009 * 119.92782 * 0.04162 * 4 3 2 30 30 H 1.07999 * 120.07720 * 179.97438 * 5 4 3 31 31 H 0.96994 * 120.00650 * 5.68943 * 9 7 6 32 32 H 1.08997 * 109.47299 * 303.71149 * 10 9 7 33 33 H 1.09001 * 109.47162 * 63.71689 * 10 9 7 34 34 H 0.96997 * 120.00161 * 185.03453 * 15 14 12 35 35 H 1.08998 * 117.50085 * 0.02562 * 20 11 10 36 36 H 1.09004 * 117.49667 * 145.01723 * 20 11 10 37 37 H 1.08999 * 117.49684 * 214.98439 * 21 11 10 38 38 H 1.08998 * 117.49902 * 359.97438 * 21 11 10 39 39 H 1.08001 * 120.07373 * 180.23270 * 22 6 5 40 40 H 1.07995 * 119.92660 * 179.74373 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2620 2.0701 1.2000 5 6 2.7214 3.3709 1.2070 6 6 2.9488 4.0339 0.0000 7 6 3.4353 5.4300 0.0001 8 8 3.5480 6.0344 1.0486 9 7 3.7537 6.0327 -1.1626 10 6 4.3525 7.3698 -1.1546 11 6 4.5288 7.8583 -2.5939 12 6 5.2839 6.9281 -3.5080 13 1 5.0097 6.8547 -4.5501 14 6 6.3249 6.1708 -3.0141 15 7 6.7962 6.4072 -1.8093 16 14 7.0657 4.8090 -4.0563 17 1 7.6067 5.3860 -5.3131 18 1 8.1617 4.1490 -3.3021 19 1 6.0174 3.8088 -4.3818 20 6 4.7063 9.3620 -2.8127 21 6 3.3927 8.6809 -3.2048 22 6 2.7203 3.3713 -1.2070 23 6 2.2613 2.0703 -1.2000 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.0815 1.5573 2.1333 30 1 2.8998 3.8768 2.1443 31 1 3.5864 5.5813 -2.0047 32 1 3.7005 8.0567 -0.6151 33 1 5.3245 7.3296 -0.6630 34 1 7.5747 5.9248 -1.4898 35 1 4.6978 10.0033 -1.9315 36 1 5.3690 9.6786 -3.6182 37 1 3.1917 8.5496 -4.2681 38 1 2.5195 8.8738 -2.5816 39 1 2.8980 3.8775 -2.1443 40 1 2.0802 1.5578 -2.1332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404177554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:23 Heat of formation + Delta-G solvation = -16.419577 kcal Electronic energy + Delta-G solvation = -20671.725193 eV Core-core repulsion = 17643.850896 eV Total energy + Delta-G solvation = -3027.874296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13459 -39.61293 -38.40627 -35.18120 -34.72507 -34.14819 -31.90677 -30.67660 -27.96744 -27.26006 -25.12143 -23.54303 -23.01092 -22.49455 -21.19061 -20.94925 -19.12727 -17.95118 -17.07352 -16.74830 -16.40705 -16.05141 -15.89094 -15.79429 -15.19298 -14.81558 -14.62669 -14.34466 -14.26819 -13.98590 -13.69079 -13.45504 -13.29126 -12.85021 -12.74114 -12.61461 -12.32550 -12.18156 -12.06899 -11.93966 -11.66390 -11.48319 -11.09859 -10.85069 -10.65792 -10.15455 -9.95409 -9.87389 -9.54382 -8.03961 -6.20652 -0.10296 0.41749 1.42402 1.45250 1.51914 1.94077 2.39363 2.45546 2.91454 3.03741 3.62180 3.75935 3.83524 3.99565 4.04617 4.22984 4.31025 4.43192 4.50483 4.55747 4.59495 4.66532 4.73118 4.76715 4.94474 4.97719 5.02885 5.09301 5.13174 5.14922 5.26327 5.36205 5.43714 5.45879 5.50096 5.57110 5.62706 5.76481 5.89532 5.97074 6.35922 6.73241 6.89329 7.38726 7.42975 8.90632 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.005314 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.557454 B = 5268.061633 C = 5977.223961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.058 4.058 4 C -0.125 4.125 5 C -0.075 4.075 6 C -0.155 4.155 7 C 0.539 3.461 8 O -0.602 6.602 9 N -0.679 5.679 10 C 0.173 3.827 11 C 0.010 3.990 12 C -0.509 4.509 13 H 0.062 0.938 14 C 0.039 3.961 15 N -0.894 5.894 16 Si 0.943 3.057 17 H -0.274 1.274 18 H -0.294 1.294 19 H -0.259 1.259 20 C -0.197 4.197 21 C -0.186 4.186 22 C -0.090 4.090 23 C -0.126 4.126 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.154 0.846 30 H 0.122 0.878 31 H 0.405 0.595 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.259 0.741 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 -13.472 1.049 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.058 4.058 4 C -0.142 4.142 5 C -0.094 4.094 6 C -0.158 4.158 7 C 0.327 3.673 8 O -0.487 6.487 9 N -0.326 5.326 10 C 0.049 3.951 11 C 0.009 3.991 12 C -0.546 4.546 13 H 0.080 0.920 14 C -0.164 4.164 15 N -0.531 5.531 16 Si 0.769 3.231 17 H -0.199 1.199 18 H -0.220 1.220 19 H -0.183 1.183 20 C -0.236 4.236 21 C -0.223 4.223 22 C -0.108 4.108 23 C -0.143 4.143 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.171 0.829 30 H 0.140 0.860 31 H 0.241 0.759 32 H 0.041 0.959 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.146 0.854 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.685 -13.130 1.894 17.034 hybrid contribution 0.914 0.024 -0.732 1.172 sum -9.771 -13.105 1.162 16.388 Atomic orbital electron populations 1.21745 0.93797 1.02694 1.02045 1.20668 0.96762 0.90354 1.04364 1.20487 0.95396 0.97471 0.92443 1.21253 1.00119 0.93475 0.99378 1.21311 0.96048 0.95258 0.96819 1.20011 1.06324 0.93431 0.96030 1.18830 0.77656 0.87158 0.83607 1.90638 1.57768 1.67367 1.32879 1.45653 1.60047 1.18879 1.08042 1.20711 0.96662 0.81259 0.96448 1.19229 0.97311 0.90115 0.92443 1.20657 1.16236 1.22672 0.95083 0.91979 1.25576 0.96744 0.98485 0.95552 1.70007 1.22698 1.41832 1.18553 0.85839 0.78314 0.80232 0.78749 1.19919 1.22009 1.18333 1.22930 1.00282 0.98444 1.01934 1.22958 0.91539 1.07171 1.00619 1.21504 0.96820 0.95868 0.96643 1.21278 0.99965 0.93699 0.99388 0.92858 0.90685 0.92849 0.89612 0.89513 0.82874 0.85987 0.75854 0.95926 0.90842 0.93163 0.90826 0.90393 0.89453 0.89956 0.85356 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 71.98 0.71 -1.08 16 2 C -0.08 -1.17 6.06 29.85 0.18 -0.99 16 3 C -0.06 -1.22 5.14 -19.81 -0.10 -1.32 16 4 C -0.12 -2.95 9.68 22.23 0.22 -2.73 16 5 C -0.08 -2.40 9.59 22.52 0.22 -2.18 16 6 C -0.15 -5.66 5.87 -20.09 -0.12 -5.78 16 7 C 0.54 24.39 7.76 86.79 0.67 25.06 16 8 O -0.60 -31.20 16.35 -3.87 -0.06 -31.26 16 9 N -0.68 -30.73 5.22 -465.96 -2.43 -33.17 16 10 C 0.17 8.57 4.75 86.38 0.41 8.98 16 11 C 0.01 0.46 2.00 -52.93 -0.11 0.35 16 12 C -0.51 -25.63 8.27 25.60 0.21 -25.42 16 13 H 0.06 3.06 7.84 -2.91 -0.02 3.04 16 14 C 0.04 1.97 5.12 84.66 0.43 2.40 16 15 N -0.89 -49.19 10.75 21.45 0.23 -48.96 16 16 Si 0.94 40.57 29.55 68.60 2.03 42.60 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 20 C -0.20 -8.64 9.96 30.62 0.30 -8.34 16 21 C -0.19 -7.53 9.92 30.62 0.30 -7.22 16 22 C -0.09 -2.74 9.54 22.53 0.21 -2.53 16 23 C -0.13 -2.97 9.68 22.23 0.22 -2.76 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.09 1.02 8.08 -2.38 -0.02 1.00 16 28 H 0.09 1.00 8.08 -2.39 -0.02 0.98 16 29 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.12 4.05 7.66 -2.91 -0.02 4.03 16 31 H 0.40 17.12 5.98 -92.71 -0.55 16.57 16 32 H 0.02 1.11 8.06 -2.39 -0.02 1.10 16 33 H 0.07 4.20 6.04 -2.39 -0.01 4.18 16 34 H 0.26 14.00 8.32 -92.71 -0.77 13.23 16 35 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 37 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.13 3.85 6.42 -2.91 -0.02 3.83 16 40 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -63.04 336.03 4.00 -59.03 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 0.48 Total: 35.30 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 3.77 Total: -23.54 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.20 Total: -82.12 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.06 Total: -31.26 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -63.04 4.00 -59.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404177554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.615 kcal (2) G-P(sol) polarization free energy of solvation -63.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds