Wall clock time and date at job start Mon Mar 30 2020 01:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47068 * 2 1 4 4 C 1.50699 * 109.47053 * 239.99657 * 2 1 3 5 5 C 1.38239 * 119.99660 * 120.15636 * 4 2 1 6 6 C 1.38228 * 119.99850 * 179.78758 * 5 4 2 7 7 C 1.38240 * 119.99815 * 0.44039 * 6 5 4 8 8 C 1.38228 * 120.00304 * 359.81121 * 7 6 5 9 9 C 1.38232 * 120.00358 * 300.42743 * 4 2 1 10 10 C 1.53001 * 109.46696 * 119.99665 * 2 1 3 11 11 N 1.46501 * 115.54523 * 160.15992 * 10 2 1 12 12 C 1.34775 * 119.99592 * 179.97438 * 11 10 2 13 13 O 1.21687 * 120.00575 * 0.02562 * 12 11 10 14 14 C 1.46378 * 119.99803 * 179.97438 * 12 11 10 15 15 H 1.08002 * 120.00052 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00164 * 179.97438 * 14 12 11 17 17 N 1.30681 * 119.99756 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00208 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47285 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47428 * 120.00330 * 18 16 14 21 21 H 1.48505 * 109.47097 * 240.00394 * 18 16 14 22 22 C 1.52997 * 117.50092 * 14.45859 * 10 2 1 23 23 C 1.52996 * 117.50336 * 305.83414 * 10 2 1 24 24 H 1.09003 * 109.47460 * 300.00425 * 1 2 3 25 25 H 1.09007 * 109.46929 * 60.00138 * 1 2 3 26 26 H 1.08997 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46636 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46789 * 300.00075 * 3 2 1 29 29 H 1.08997 * 109.46985 * 60.00137 * 3 2 1 30 30 H 1.08003 * 119.99956 * 359.97438 * 5 4 2 31 31 H 1.08003 * 120.00136 * 180.27263 * 6 5 4 32 32 H 1.08006 * 119.99634 * 179.83298 * 7 6 5 33 33 H 1.07998 * 120.00595 * 179.97438 * 8 7 6 34 34 H 1.08007 * 119.99820 * 359.97438 * 9 4 2 35 35 H 0.96993 * 120.00017 * 359.93829 * 11 10 2 36 36 H 0.96998 * 119.99898 * 179.97438 * 17 16 14 37 37 H 1.09005 * 117.49657 * 359.97438 * 22 10 2 38 38 H 1.08995 * 117.50190 * 145.02027 * 22 10 2 39 39 H 1.08996 * 117.49876 * 214.98150 * 23 10 2 40 40 H 1.09008 * 117.49680 * 359.97438 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.8298 -0.0396 -2.1387 6 6 3.2942 -0.6925 -3.2651 7 6 2.9537 -2.0137 -3.4878 8 6 2.1520 -2.6830 -2.5822 9 6 1.6912 -2.0313 -1.4536 10 6 2.0400 -0.7212 1.2493 11 7 3.4228 -1.2004 1.1820 12 6 3.9635 -1.8476 2.2333 13 8 3.3031 -2.0345 3.2381 14 6 5.3449 -2.3269 2.1659 15 1 5.9310 -2.1614 1.2739 16 6 5.9071 -2.9990 3.2584 17 7 5.1981 -3.1988 4.3378 18 14 7.6702 -3.6100 3.1727 19 1 8.2518 -3.2599 1.8519 20 1 8.4685 -2.9710 4.2496 21 1 7.6922 -5.0844 3.3486 22 6 1.0364 -1.5666 2.0361 23 6 1.5264 -0.2338 2.6056 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.0924 0.9938 -1.9668 31 1 3.9208 -0.1697 -3.9726 32 1 3.3143 -2.5230 -4.3693 33 1 1.8857 -3.7150 -2.7564 34 1 1.0649 -2.5543 -0.7459 35 1 3.9489 -1.0522 0.3808 36 1 5.5873 -3.6646 5.0944 37 1 0.0128 -1.6087 1.6639 38 1 1.4049 -2.4796 2.5038 39 1 2.2172 -0.2699 3.4479 40 1 0.8254 0.6011 2.6079 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408520759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:10 Heat of formation + Delta-G solvation = 12.419110 kcal Electronic energy + Delta-G solvation = -21684.029563 eV Core-core repulsion = 18657.405806 eV Total energy + Delta-G solvation = -3026.623757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.14606 -38.14382 -36.09761 -33.32132 -32.28930 -31.33929 -30.78474 -29.23287 -27.22152 -26.13471 -23.77663 -22.09477 -21.52246 -21.41597 -19.73741 -17.97887 -17.38180 -16.62873 -15.73617 -15.16071 -14.72731 -14.46365 -14.14216 -13.83583 -13.59545 -13.24860 -13.04923 -12.69795 -12.49192 -12.25829 -12.15134 -11.79839 -11.56085 -11.41989 -11.29208 -11.07538 -10.87156 -10.72632 -10.54746 -10.42013 -10.24848 -10.16817 -9.71548 -9.45020 -8.80433 -8.67622 -8.42579 -7.41528 -7.09460 -6.15019 -4.60651 1.59067 1.64672 3.13375 3.21974 3.26405 4.01026 4.11420 4.43184 4.66082 4.71692 4.96540 5.06003 5.17252 5.19255 5.31041 5.41155 5.44775 5.69182 5.72354 5.77349 5.85273 5.88472 5.95545 5.99945 6.06853 6.16563 6.22002 6.27309 6.35655 6.44416 6.48138 6.50988 6.71717 6.74990 6.91839 7.07886 7.23670 7.36671 7.45903 7.97152 8.22205 8.38627 9.05347 9.59924 10.62556 10.82605 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.006582 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.206311 B = 4253.059755 C = 5205.594401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.010 3.990 3 C -0.140 4.140 4 C -0.060 4.060 5 C -0.123 4.123 6 C -0.123 4.123 7 C -0.128 4.128 8 C -0.120 4.120 9 C -0.098 4.098 10 C 0.132 3.868 11 N -0.727 5.727 12 C 0.557 3.443 13 O -0.571 6.571 14 C -0.544 4.544 15 H 0.065 0.935 16 C 0.089 3.911 17 N -0.767 5.767 18 Si 0.904 3.096 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.189 4.189 23 C -0.181 4.181 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.382 0.618 36 H 0.266 0.734 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.366 5.671 -12.905 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.009 3.991 3 C -0.197 4.197 4 C -0.060 4.060 5 C -0.141 4.141 6 C -0.141 4.141 7 C -0.146 4.146 8 C -0.138 4.138 9 C -0.116 4.116 10 C 0.042 3.958 11 N -0.378 5.378 12 C 0.361 3.639 13 O -0.455 6.455 14 C -0.581 4.581 15 H 0.083 0.917 16 C -0.130 4.130 17 N -0.396 5.396 18 Si 0.729 3.271 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.227 4.227 23 C -0.220 4.220 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.214 0.786 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.827 5.450 -11.975 14.823 hybrid contribution 1.251 -0.362 -0.365 1.352 sum -5.577 5.088 -12.340 14.466 Atomic orbital electron populations 1.21971 0.93518 1.02328 1.01652 1.19067 0.95226 0.94335 0.90432 1.21907 1.01692 0.94626 1.01438 1.19730 0.97132 0.94182 0.94949 1.21182 0.98246 1.00258 0.94410 1.21060 1.00259 0.95018 0.97778 1.21063 0.99068 0.94972 0.99517 1.21098 0.98319 0.99588 0.94767 1.21006 0.99660 0.94189 0.96711 1.20126 0.85074 1.00421 0.90143 1.45500 1.10132 1.62848 1.19340 1.18153 0.87654 0.77055 0.81029 1.90540 1.63008 1.60337 1.31581 1.20915 0.96721 1.38776 1.01656 0.91671 1.25664 0.98607 0.94176 0.94580 1.70027 1.35787 1.30761 1.03039 0.86372 0.83011 0.78753 0.78964 1.18836 1.20206 1.20206 1.23532 0.97022 0.97705 1.04486 1.23353 1.03378 0.96187 0.99093 0.91927 0.92644 0.91857 0.91983 0.92661 0.92126 0.85809 0.86554 0.86678 0.86482 0.86173 0.78571 0.92279 0.90438 0.87090 0.86969 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 6.96 37.16 0.26 -1.50 16 2 C 0.01 0.15 0.66 -155.65 -0.10 0.05 16 3 C -0.14 -1.85 7.03 37.16 0.26 -1.59 16 4 C -0.06 -0.88 3.54 -104.62 -0.37 -1.25 16 5 C -0.12 -1.64 8.98 -39.58 -0.36 -2.00 16 6 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 7 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 8 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 9 C -0.10 -1.47 8.83 -39.59 -0.35 -1.82 16 10 C 0.13 2.52 2.01 -131.82 -0.26 2.25 16 11 N -0.73 -16.42 5.38 -49.00 -0.26 -16.68 16 12 C 0.56 15.56 7.45 -12.99 -0.10 15.46 16 13 O -0.57 -17.51 10.49 5.20 0.05 -17.46 16 14 C -0.54 -15.44 9.54 -35.63 -0.34 -15.78 16 15 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 16 C 0.09 2.50 5.50 -17.36 -0.10 2.40 16 17 N -0.77 -22.88 11.83 55.55 0.66 -22.22 16 18 Si 0.90 20.40 29.56 -169.99 -5.02 15.38 16 19 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 22 C -0.19 -3.79 8.85 -26.73 -0.24 -4.02 16 23 C -0.18 -3.65 8.64 -26.73 -0.23 -3.89 16 24 H 0.06 0.77 6.93 -51.93 -0.36 0.41 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.82 5.93 -51.93 -0.31 0.51 16 27 H 0.06 0.87 7.51 -51.93 -0.39 0.48 16 28 H 0.05 0.61 7.52 -51.93 -0.39 0.22 16 29 H 0.06 0.80 7.70 -51.93 -0.40 0.40 16 30 H 0.12 1.47 5.90 -52.48 -0.31 1.16 16 31 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.12 1.86 7.56 -52.48 -0.40 1.46 16 35 H 0.38 8.14 7.75 -40.82 -0.32 7.83 16 36 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 37 H 0.08 1.30 5.89 -51.93 -0.31 1.00 16 38 H 0.11 2.73 6.37 -51.93 -0.33 2.40 16 39 H 0.11 2.76 6.37 -51.93 -0.33 2.43 16 40 H 0.07 1.22 7.08 -51.92 -0.37 0.85 16 LS Contribution 317.67 15.07 4.79 4.79 Total: -1.00 -32.29 317.67 -8.35 -40.64 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -5.44 Total: 13.22 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -3.12 Total: -17.66 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.39 Total: -38.90 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.05 Total: -17.46 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.29 -8.35 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408520759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.058 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds