Wall clock time and date at job start Mon Mar 30 2020 01:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47068 * 2 1 4 4 C 1.50699 * 109.47053 * 239.99657 * 2 1 3 5 5 C 1.38239 * 119.99660 * 120.15636 * 4 2 1 6 6 C 1.38228 * 119.99850 * 179.78758 * 5 4 2 7 7 C 1.38240 * 119.99815 * 0.44039 * 6 5 4 8 8 C 1.38228 * 120.00304 * 359.81121 * 7 6 5 9 9 C 1.38232 * 120.00358 * 300.42743 * 4 2 1 10 10 C 1.53001 * 109.46696 * 119.99665 * 2 1 3 11 11 N 1.46501 * 115.54523 * 160.15992 * 10 2 1 12 12 C 1.34775 * 119.99592 * 179.97438 * 11 10 2 13 13 O 1.21687 * 120.00575 * 0.02562 * 12 11 10 14 14 C 1.46378 * 119.99803 * 179.97438 * 12 11 10 15 15 H 1.08002 * 120.00052 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00164 * 179.97438 * 14 12 11 17 17 N 1.30681 * 119.99756 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00208 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47285 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47428 * 120.00330 * 18 16 14 21 21 H 1.48505 * 109.47097 * 240.00394 * 18 16 14 22 22 C 1.52997 * 117.50092 * 14.45859 * 10 2 1 23 23 C 1.52996 * 117.50336 * 305.83414 * 10 2 1 24 24 H 1.09003 * 109.47460 * 300.00425 * 1 2 3 25 25 H 1.09007 * 109.46929 * 60.00138 * 1 2 3 26 26 H 1.08997 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46636 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46789 * 300.00075 * 3 2 1 29 29 H 1.08997 * 109.46985 * 60.00137 * 3 2 1 30 30 H 1.08003 * 119.99956 * 359.97438 * 5 4 2 31 31 H 1.08003 * 120.00136 * 180.27263 * 6 5 4 32 32 H 1.08006 * 119.99634 * 179.83298 * 7 6 5 33 33 H 1.07998 * 120.00595 * 179.97438 * 8 7 6 34 34 H 1.08007 * 119.99820 * 359.97438 * 9 4 2 35 35 H 0.96993 * 120.00017 * 359.93829 * 11 10 2 36 36 H 0.96998 * 119.99898 * 179.97438 * 17 16 14 37 37 H 1.09005 * 117.49657 * 359.97438 * 22 10 2 38 38 H 1.08995 * 117.50190 * 145.02027 * 22 10 2 39 39 H 1.08996 * 117.49876 * 214.98150 * 23 10 2 40 40 H 1.09008 * 117.49680 * 359.97438 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.8298 -0.0396 -2.1387 6 6 3.2942 -0.6925 -3.2651 7 6 2.9537 -2.0137 -3.4878 8 6 2.1520 -2.6830 -2.5822 9 6 1.6912 -2.0313 -1.4536 10 6 2.0400 -0.7212 1.2493 11 7 3.4228 -1.2004 1.1820 12 6 3.9635 -1.8476 2.2333 13 8 3.3031 -2.0345 3.2381 14 6 5.3449 -2.3269 2.1659 15 1 5.9310 -2.1614 1.2739 16 6 5.9071 -2.9990 3.2584 17 7 5.1981 -3.1988 4.3378 18 14 7.6702 -3.6100 3.1727 19 1 8.2518 -3.2599 1.8519 20 1 8.4685 -2.9710 4.2496 21 1 7.6922 -5.0844 3.3486 22 6 1.0364 -1.5666 2.0361 23 6 1.5264 -0.2338 2.6056 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.0924 0.9938 -1.9668 31 1 3.9208 -0.1697 -3.9726 32 1 3.3143 -2.5230 -4.3693 33 1 1.8857 -3.7150 -2.7564 34 1 1.0649 -2.5543 -0.7459 35 1 3.9489 -1.0522 0.3808 36 1 5.5873 -3.6646 5.0944 37 1 0.0128 -1.6087 1.6639 38 1 1.4049 -2.4796 2.5038 39 1 2.2172 -0.2699 3.4479 40 1 0.8254 0.6011 2.6079 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408520759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:10 Heat of formation + Delta-G solvation = -7.375265 kcal Electronic energy + Delta-G solvation = -21684.887911 eV Core-core repulsion = 18657.405806 eV Total energy + Delta-G solvation = -3027.482106 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48125 -39.61105 -37.82564 -34.93305 -34.22335 -33.26992 -31.80984 -30.30855 -28.53327 -28.00833 -25.08508 -23.18719 -23.09921 -22.83194 -21.47635 -19.61701 -19.06787 -17.92235 -17.52381 -16.85558 -15.94667 -15.78035 -15.55116 -15.28693 -14.87300 -14.69740 -14.60988 -14.26979 -14.08893 -13.57217 -13.42047 -13.18705 -12.90005 -12.85200 -12.62439 -12.59115 -12.43591 -12.25002 -12.05104 -11.98122 -11.79535 -11.67160 -11.23443 -10.94492 -10.88544 -9.70353 -9.61662 -9.47854 -8.99427 -8.26701 -6.83389 0.55397 0.61538 1.36392 1.36673 1.53859 2.22367 2.44869 2.95991 3.01303 3.06829 3.70609 3.75704 3.80658 4.01807 4.20389 4.24741 4.28839 4.33711 4.38097 4.50297 4.68730 4.73662 4.80085 4.81738 4.90958 4.97973 5.02705 5.10219 5.20004 5.24492 5.27128 5.31572 5.38792 5.43552 5.60641 5.70955 5.72360 5.85530 5.88944 6.21750 6.25194 6.42310 6.87920 7.58681 8.52858 8.70759 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.006582 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.206311 B = 4253.059755 C = 5205.594401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.018 3.982 3 C -0.138 4.138 4 C -0.074 4.074 5 C -0.128 4.128 6 C -0.124 4.124 7 C -0.130 4.130 8 C -0.132 4.132 9 C -0.120 4.120 10 C 0.139 3.861 11 N -0.718 5.718 12 C 0.541 3.459 13 O -0.608 6.608 14 C -0.575 4.575 15 H 0.077 0.923 16 C 0.033 3.967 17 N -0.819 5.819 18 Si 0.991 3.009 19 H -0.250 1.250 20 H -0.268 1.268 21 H -0.269 1.269 22 C -0.191 4.191 23 C -0.183 4.183 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.390 0.610 36 H 0.273 0.727 37 H 0.114 0.886 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.675 6.788 -15.582 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.017 3.983 3 C -0.195 4.195 4 C -0.074 4.074 5 C -0.146 4.146 6 C -0.142 4.142 7 C -0.148 4.148 8 C -0.150 4.150 9 C -0.138 4.138 10 C 0.050 3.950 11 N -0.368 5.368 12 C 0.345 3.655 13 O -0.494 6.494 14 C -0.612 4.612 15 H 0.095 0.905 16 C -0.182 4.182 17 N -0.449 5.449 18 Si 0.811 3.189 19 H -0.174 1.174 20 H -0.192 1.192 21 H -0.194 1.194 22 C -0.230 4.230 23 C -0.222 4.222 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.123 0.877 35 H 0.223 0.777 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.154 6.591 -14.692 17.239 hybrid contribution 0.988 -0.715 0.427 1.292 sum -5.167 5.876 -14.265 16.270 Atomic orbital electron populations 1.21973 0.91712 1.02492 1.03117 1.19090 0.96605 0.94616 0.88003 1.21917 1.01012 0.93569 1.03000 1.19757 0.98138 0.94177 0.95347 1.21425 0.97637 1.01120 0.94394 1.21437 0.99858 0.95059 0.97810 1.21408 0.98192 0.95264 0.99898 1.21332 0.98630 1.00348 0.94689 1.21046 1.00589 0.94798 0.97344 1.20521 0.82978 0.99618 0.91871 1.45200 1.11765 1.61655 1.18173 1.18446 0.88014 0.77407 0.81630 1.90527 1.63875 1.61718 1.33277 1.21414 0.97472 1.39640 1.02644 0.90505 1.26845 1.04024 0.93716 0.93640 1.70183 1.38613 1.31880 1.04195 0.85066 0.75949 0.78210 0.79668 1.17358 1.19243 1.19354 1.23381 0.99083 0.95471 1.05039 1.23206 1.03466 0.97496 0.98021 0.91289 0.90300 0.92385 0.93103 0.89638 0.92030 0.84185 0.83808 0.84205 0.85421 0.87713 0.77689 0.91746 0.86800 0.92297 0.92019 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 6.96 71.98 0.50 -2.63 16 2 C 0.02 0.49 0.66 -52.92 -0.04 0.46 16 3 C -0.14 -3.31 7.03 71.98 0.51 -2.80 16 4 C -0.07 -2.06 3.54 -19.87 -0.07 -2.13 16 5 C -0.13 -3.07 8.98 22.27 0.20 -2.87 16 6 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 7 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 8 C -0.13 -3.44 10.05 22.27 0.22 -3.21 16 9 C -0.12 -3.54 8.83 22.27 0.20 -3.34 16 10 C 0.14 5.36 2.01 3.60 0.01 5.37 16 11 N -0.72 -33.30 5.38 -427.16 -2.30 -35.60 16 12 C 0.54 31.63 7.45 86.36 0.64 32.27 16 13 O -0.61 -39.64 10.49 -4.31 -0.05 -39.68 16 14 C -0.57 -33.47 9.54 24.83 0.24 -33.24 16 15 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 16 C 0.03 1.86 5.50 85.30 0.47 2.33 16 17 N -0.82 -50.71 11.83 21.84 0.26 -50.45 16 18 Si 0.99 42.16 29.56 68.60 2.03 44.18 16 19 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 C -0.19 -7.95 8.85 30.59 0.27 -7.68 16 23 C -0.18 -7.58 8.64 30.59 0.26 -7.31 16 24 H 0.07 1.50 6.93 -2.39 -0.02 1.48 16 25 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.06 1.40 5.93 -2.39 -0.01 1.38 16 27 H 0.05 1.33 7.51 -2.39 -0.02 1.31 16 28 H 0.08 1.55 7.52 -2.39 -0.02 1.53 16 29 H 0.06 1.46 7.70 -2.39 -0.02 1.44 16 30 H 0.14 2.84 5.90 -2.91 -0.02 2.82 16 31 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.10 3.32 7.56 -2.91 -0.02 3.30 16 35 H 0.39 16.75 7.75 -92.71 -0.72 16.03 16 36 H 0.27 15.32 8.29 -92.71 -0.77 14.56 16 37 H 0.11 3.82 5.89 -2.38 -0.01 3.80 16 38 H 0.06 3.10 6.37 -2.39 -0.02 3.09 16 39 H 0.06 3.22 6.37 -2.39 -0.02 3.21 16 40 H 0.11 3.65 7.08 -2.38 -0.02 3.63 16 Total: -1.00 -74.69 317.67 4.14 -70.55 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: 0.34 Total: 40.93 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 3.86 Total: -29.93 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -2.04 Total: -86.05 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.05 Total: -39.68 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -74.69 4.14 -70.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408520759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.177 kcal (2) G-P(sol) polarization free energy of solvation -74.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds