Wall clock time and date at job start Mon Mar 30 2020 01:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00096 * 2 1 4 4 C 1.50700 * 120.00435 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.46763 * 354.74756 * 4 2 1 6 6 C 1.52994 * 109.47487 * 234.74774 * 4 2 1 7 7 C 1.50701 * 109.47008 * 114.74641 * 4 2 1 8 8 O 1.21279 * 119.99847 * 4.79558 * 7 4 2 9 9 N 1.34773 * 119.99878 * 184.80013 * 7 4 2 10 10 C 1.39238 * 120.00104 * 183.98904 * 9 7 4 11 11 C 1.39484 * 119.82949 * 324.59734 * 10 9 7 12 12 C 1.36376 * 120.16499 * 180.29807 * 11 10 9 13 13 C 1.40874 * 119.82731 * 359.47668 * 12 11 10 14 14 C 1.41155 * 120.16117 * 180.25209 * 13 12 11 15 15 H 1.08003 * 119.99954 * 214.22904 * 14 13 12 16 16 C 1.39910 * 120.00216 * 34.23302 * 14 13 12 17 17 N 1.30878 * 119.99651 * 5.71674 * 16 14 13 18 18 Si 1.86793 * 120.00186 * 185.71818 * 16 14 13 19 19 H 1.48505 * 109.47233 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47374 * 119.99650 * 18 16 14 21 21 H 1.48498 * 109.47313 * 240.00320 * 18 16 14 22 22 C 1.40866 * 119.67266 * 0.51960 * 13 12 11 23 23 C 1.36375 * 119.83028 * 359.73314 * 22 13 12 24 24 H 1.07999 * 120.00341 * 5.08795 * 1 2 3 25 25 H 1.08002 * 119.99435 * 185.08214 * 1 2 3 26 26 H 1.08991 * 109.47546 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46490 * 299.99771 * 3 2 1 28 28 H 1.09004 * 109.46824 * 59.98847 * 3 2 1 29 29 H 1.09004 * 109.47403 * 179.97438 * 5 4 2 30 30 H 1.09002 * 109.47666 * 299.99522 * 5 4 2 31 31 H 1.08998 * 109.47316 * 59.99865 * 5 4 2 32 32 H 1.08999 * 109.47142 * 299.99945 * 6 4 2 33 33 H 1.09003 * 109.47535 * 60.00137 * 6 4 2 34 34 H 1.09004 * 109.47529 * 179.97438 * 6 4 2 35 35 H 0.97000 * 120.00345 * 3.99346 * 9 7 4 36 36 H 1.07995 * 119.91620 * 0.02562 * 11 10 9 37 37 H 1.08004 * 120.08273 * 179.70268 * 12 11 10 38 38 H 0.96997 * 119.99813 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.08631 * 179.71125 * 22 13 12 40 40 H 1.07994 * 119.91971 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 1.0746 -2.4649 0.1332 6 6 3.0396 -1.3299 1.1785 7 6 2.8298 -1.4432 -1.2897 8 8 2.8402 -0.5315 -2.0894 9 7 3.5035 -2.5800 -1.5550 10 6 4.2788 -2.6770 -2.7075 11 6 3.8589 -2.0506 -3.8809 12 6 4.6099 -2.1463 -5.0152 13 6 5.8179 -2.8708 -4.9968 14 6 6.6034 -2.9699 -6.1654 15 1 7.1611 -3.8727 -6.3662 16 6 6.6595 -1.8986 -7.0635 17 7 6.0757 -0.7653 -6.7675 18 14 7.5676 -2.0858 -8.6851 19 1 8.1369 -3.4543 -8.7786 20 1 6.6235 -1.8642 -9.8097 21 1 8.6650 -1.0879 -8.7561 22 6 6.2352 -3.5006 -3.8079 23 6 5.4711 -3.4004 -2.6828 24 1 -0.5401 0.9316 -0.0829 25 1 -0.5399 -0.9317 0.0829 26 1 3.1351 1.1060 0.0005 27 1 1.8002 1.8766 -0.8901 28 1 1.8000 1.8768 0.8899 29 1 1.6196 -3.4089 0.1331 30 1 0.5204 -2.3650 1.0664 31 1 0.3792 -2.4472 -0.7060 32 1 3.7442 -0.5036 1.0841 33 1 2.4854 -1.2300 2.1118 34 1 3.5844 -2.2741 1.1792 35 1 3.4482 -3.3306 -0.9431 36 1 2.9347 -1.4921 -3.8923 37 1 4.2812 -1.6647 -5.9244 38 1 6.1143 -0.0227 -7.3903 39 1 7.1579 -4.0617 -3.7875 40 1 5.7894 -3.8830 -1.7707 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424542279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:19 Heat of formation + Delta-G solvation = -5.511174 kcal Electronic energy + Delta-G solvation = -20802.562167 eV Core-core repulsion = 17775.160894 eV Total energy + Delta-G solvation = -3027.401273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.23622 -37.77955 -36.28583 -34.44549 -33.04906 -31.72154 -29.50373 -28.82010 -28.56943 -25.97928 -25.14908 -23.56467 -21.48553 -21.10044 -19.62861 -18.00198 -17.25583 -16.56845 -16.11262 -15.39359 -15.12272 -14.78338 -14.18212 -13.92930 -13.78093 -13.07137 -13.00224 -12.69787 -12.42927 -12.31293 -12.21454 -12.18223 -11.87032 -11.79418 -11.66782 -11.49085 -11.15339 -10.99315 -10.84288 -10.68366 -10.48540 -9.88124 -9.80912 -9.38562 -9.10936 -8.88081 -8.62322 -7.51675 -6.88369 -6.62175 -4.29695 2.24008 2.61795 3.02343 3.10331 3.12007 3.16818 3.37684 3.84518 4.00161 4.51149 4.71107 4.78356 4.90260 5.16622 5.27779 5.44018 5.57590 5.63658 5.66900 5.70444 5.73016 5.81898 5.93606 6.05340 6.11317 6.14725 6.21075 6.40456 6.65184 6.81898 6.92341 7.02441 7.06126 7.20976 7.31560 7.62733 7.69881 7.97729 8.10182 8.23266 8.34663 8.66953 8.81959 8.94065 9.03236 10.32851 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032090 B = 0.004132 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.324589 B = 6774.610995 C = 7249.593532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 C -0.111 4.111 4 C -0.049 4.049 5 C -0.143 4.143 6 C -0.136 4.136 7 C 0.511 3.489 8 O -0.519 6.519 9 N -0.652 5.652 10 C 0.005 3.995 11 C -0.091 4.091 12 C -0.143 4.143 13 C 0.106 3.894 14 C -0.466 4.466 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.805 5.805 18 Si 0.911 3.089 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.275 1.275 22 C -0.206 4.206 23 C -0.112 4.112 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.393 0.607 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.278 0.722 39 H 0.096 0.904 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.712 -1.271 12.936 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.084 4.084 3 C -0.168 4.168 4 C -0.053 4.053 5 C -0.200 4.200 6 C -0.194 4.194 7 C 0.297 3.703 8 O -0.394 6.394 9 N -0.295 5.295 10 C -0.087 4.087 11 C -0.111 4.111 12 C -0.163 4.163 13 C 0.103 3.897 14 C -0.497 4.497 15 H 0.095 0.905 16 C -0.145 4.145 17 N -0.432 5.432 18 Si 0.736 3.264 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.201 1.201 22 C -0.226 4.226 23 C -0.132 4.132 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.226 0.774 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.732 -0.357 12.276 14.512 hybrid contribution 0.474 -0.297 -0.424 0.702 sum -7.257 -0.654 11.852 13.913 Atomic orbital electron populations 1.23715 0.95193 1.02049 1.03647 1.21263 0.94807 0.94221 0.98136 1.20759 1.00451 0.94238 1.01338 1.19858 0.95980 0.94976 0.94476 1.21955 0.98908 0.96465 1.02723 1.21821 0.98474 1.02781 0.96313 1.20258 0.80143 0.82408 0.87532 1.90705 1.61092 1.39527 1.48081 1.42986 1.47623 1.15101 1.23821 1.17261 0.94902 1.10390 0.86170 1.20580 0.99802 0.99157 0.91567 1.21046 0.94613 1.03301 0.97330 1.17690 0.90700 0.89443 0.91845 1.19519 1.25423 1.00912 1.03851 0.90540 1.25880 0.94750 0.94628 0.99200 1.69822 1.35782 1.02266 1.35302 0.86213 0.79487 0.79370 0.81288 1.18583 1.19900 1.20063 1.20663 1.00117 1.08805 0.93000 1.20080 0.93597 1.01905 0.97601 0.88429 0.88009 0.91923 0.91177 0.92237 0.91923 0.91309 0.91624 0.91696 0.91546 0.91896 0.77355 0.87555 0.86320 0.91072 0.88558 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.44 13.34 29.02 0.39 -2.06 16 2 C -0.08 -1.11 4.39 -101.06 -0.44 -1.56 16 3 C -0.11 -1.48 8.77 36.01 0.32 -1.16 16 4 C -0.05 -0.64 0.69 -156.81 -0.11 -0.75 16 5 C -0.14 -1.48 6.99 37.16 0.26 -1.22 16 6 C -0.14 -1.47 8.20 37.15 0.30 -1.17 16 7 C 0.51 9.12 6.22 -10.99 -0.07 9.05 16 8 O -0.52 -11.58 12.73 5.56 0.07 -11.51 16 9 N -0.65 -11.53 5.16 -9.74 -0.05 -11.58 16 10 C 0.00 0.11 6.30 -83.57 -0.53 -0.42 16 11 C -0.09 -2.30 8.61 -39.79 -0.34 -2.64 16 12 C -0.14 -3.88 8.57 -39.26 -0.34 -4.21 16 13 C 0.11 2.86 5.50 -106.80 -0.59 2.27 16 14 C -0.47 -12.57 9.03 -37.85 -0.34 -12.91 16 15 H 0.08 1.97 7.85 -52.48 -0.41 1.55 16 16 C 0.07 1.85 5.31 -17.33 -0.09 1.75 16 17 N -0.81 -21.84 10.96 55.55 0.61 -21.23 16 18 Si 0.91 19.24 29.56 -169.99 -5.03 14.21 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 C -0.21 -5.02 9.74 -39.26 -0.38 -5.40 16 23 C -0.11 -2.45 9.90 -39.79 -0.39 -2.85 16 24 H 0.10 1.04 8.05 -52.49 -0.42 0.62 16 25 H 0.10 1.05 5.71 -52.49 -0.30 0.75 16 26 H 0.06 0.90 6.76 -51.93 -0.35 0.55 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.57 7.23 -51.93 -0.38 0.19 16 30 H 0.07 0.57 7.66 -51.93 -0.40 0.18 16 31 H 0.06 0.73 7.34 -51.93 -0.38 0.35 16 32 H 0.06 0.77 6.89 -51.93 -0.36 0.41 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.61 8.05 -51.93 -0.42 0.19 16 35 H 0.39 5.45 7.75 -40.82 -0.32 5.14 16 36 H 0.11 2.71 6.24 -52.49 -0.33 2.39 16 37 H 0.12 3.36 6.46 -52.48 -0.34 3.02 16 38 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 39 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 40 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -30.73 326.11 -7.49 -38.21 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.65 Total: 10.24 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -2.36 Total: -23.26 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.56 Total: -32.81 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.07 Total: -11.51 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.73 -7.49 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424542279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.703 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds