Wall clock time and date at job start Mon Mar 30 2020 01:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00096 * 2 1 4 4 C 1.50700 * 120.00435 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.46763 * 354.74756 * 4 2 1 6 6 C 1.52994 * 109.47487 * 234.74774 * 4 2 1 7 7 C 1.50701 * 109.47008 * 114.74641 * 4 2 1 8 8 O 1.21279 * 119.99847 * 4.79558 * 7 4 2 9 9 N 1.34773 * 119.99878 * 184.80013 * 7 4 2 10 10 C 1.39238 * 120.00104 * 183.98904 * 9 7 4 11 11 C 1.39484 * 119.82949 * 324.59734 * 10 9 7 12 12 C 1.36376 * 120.16499 * 180.29807 * 11 10 9 13 13 C 1.40874 * 119.82731 * 359.47668 * 12 11 10 14 14 C 1.41155 * 120.16117 * 180.25209 * 13 12 11 15 15 H 1.08003 * 119.99954 * 214.22904 * 14 13 12 16 16 C 1.39910 * 120.00216 * 34.23302 * 14 13 12 17 17 N 1.30878 * 119.99651 * 5.71674 * 16 14 13 18 18 Si 1.86793 * 120.00186 * 185.71818 * 16 14 13 19 19 H 1.48505 * 109.47233 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47374 * 119.99650 * 18 16 14 21 21 H 1.48498 * 109.47313 * 240.00320 * 18 16 14 22 22 C 1.40866 * 119.67266 * 0.51960 * 13 12 11 23 23 C 1.36375 * 119.83028 * 359.73314 * 22 13 12 24 24 H 1.07999 * 120.00341 * 5.08795 * 1 2 3 25 25 H 1.08002 * 119.99435 * 185.08214 * 1 2 3 26 26 H 1.08991 * 109.47546 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46490 * 299.99771 * 3 2 1 28 28 H 1.09004 * 109.46824 * 59.98847 * 3 2 1 29 29 H 1.09004 * 109.47403 * 179.97438 * 5 4 2 30 30 H 1.09002 * 109.47666 * 299.99522 * 5 4 2 31 31 H 1.08998 * 109.47316 * 59.99865 * 5 4 2 32 32 H 1.08999 * 109.47142 * 299.99945 * 6 4 2 33 33 H 1.09003 * 109.47535 * 60.00137 * 6 4 2 34 34 H 1.09004 * 109.47529 * 179.97438 * 6 4 2 35 35 H 0.97000 * 120.00345 * 3.99346 * 9 7 4 36 36 H 1.07995 * 119.91620 * 0.02562 * 11 10 9 37 37 H 1.08004 * 120.08273 * 179.70268 * 12 11 10 38 38 H 0.96997 * 119.99813 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.08631 * 179.71125 * 22 13 12 40 40 H 1.07994 * 119.91971 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 1.0746 -2.4649 0.1332 6 6 3.0396 -1.3299 1.1785 7 6 2.8298 -1.4432 -1.2897 8 8 2.8402 -0.5315 -2.0894 9 7 3.5035 -2.5800 -1.5550 10 6 4.2788 -2.6770 -2.7075 11 6 3.8589 -2.0506 -3.8809 12 6 4.6099 -2.1463 -5.0152 13 6 5.8179 -2.8708 -4.9968 14 6 6.6034 -2.9699 -6.1654 15 1 7.1611 -3.8727 -6.3662 16 6 6.6595 -1.8986 -7.0635 17 7 6.0757 -0.7653 -6.7675 18 14 7.5676 -2.0858 -8.6851 19 1 8.1369 -3.4543 -8.7786 20 1 6.6235 -1.8642 -9.8097 21 1 8.6650 -1.0879 -8.7561 22 6 6.2352 -3.5006 -3.8079 23 6 5.4711 -3.4004 -2.6828 24 1 -0.5401 0.9316 -0.0829 25 1 -0.5399 -0.9317 0.0829 26 1 3.1351 1.1060 0.0005 27 1 1.8002 1.8766 -0.8901 28 1 1.8000 1.8768 0.8899 29 1 1.6196 -3.4089 0.1331 30 1 0.5204 -2.3650 1.0664 31 1 0.3792 -2.4472 -0.7060 32 1 3.7442 -0.5036 1.0841 33 1 2.4854 -1.2300 2.1118 34 1 3.5844 -2.2741 1.1792 35 1 3.4482 -3.3306 -0.9431 36 1 2.9347 -1.4921 -3.8923 37 1 4.2812 -1.6647 -5.9244 38 1 6.1143 -0.0227 -7.3903 39 1 7.1579 -4.0617 -3.7875 40 1 5.7894 -3.8830 -1.7707 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424542279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:19 Heat of formation + Delta-G solvation = -23.127023 kcal Electronic energy + Delta-G solvation = -20803.326047 eV Core-core repulsion = 17775.160894 eV Total energy + Delta-G solvation = -3028.165153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.63909 -39.45115 -37.64168 -36.17358 -34.79272 -32.86459 -31.44501 -30.64991 -29.46700 -27.06464 -26.77173 -24.81359 -23.25045 -22.84387 -21.18179 -19.39588 -19.18039 -17.92675 -17.46775 -17.03989 -16.40251 -16.15613 -15.74832 -15.45297 -15.10554 -14.63884 -14.49183 -14.00705 -13.97629 -13.71390 -13.38318 -13.34830 -13.24099 -13.09943 -13.00436 -12.85233 -12.66282 -12.59807 -12.33358 -11.89097 -11.74806 -11.63364 -11.60613 -11.19016 -10.70277 -10.42325 -9.89571 -9.46870 -8.77093 -8.54699 -6.32012 0.80454 1.11324 1.25791 1.37989 1.43389 1.53868 1.82642 2.22668 2.46316 2.80786 3.52625 3.68327 3.81791 3.93203 4.11477 4.34702 4.42285 4.46942 4.63878 4.70381 4.75774 4.83381 4.85272 4.88270 4.96251 5.07995 5.10808 5.13150 5.16948 5.24735 5.29721 5.31378 5.42691 5.68058 5.70882 5.86120 5.94984 6.07347 6.11603 6.34596 6.68520 6.74347 6.94861 7.00497 7.43872 8.42368 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032090 B = 0.004132 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.324589 B = 6774.610995 C = 7249.593532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 C -0.108 4.108 4 C -0.039 4.039 5 C -0.142 4.142 6 C -0.135 4.135 7 C 0.506 3.494 8 O -0.570 6.570 9 N -0.643 5.643 10 C 0.021 3.979 11 C -0.106 4.106 12 C -0.166 4.166 13 C 0.072 3.928 14 C -0.500 4.500 15 H 0.081 0.919 16 C 0.025 3.975 17 N -0.848 5.848 18 Si 0.988 3.012 19 H -0.253 1.253 20 H -0.268 1.268 21 H -0.269 1.269 22 C -0.211 4.211 23 C -0.105 4.105 24 H 0.105 0.895 25 H 0.120 0.880 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.416 0.584 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.283 0.717 39 H 0.113 0.887 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 -2.822 15.311 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.115 4.115 3 C -0.165 4.165 4 C -0.042 4.042 5 C -0.199 4.199 6 C -0.192 4.192 7 C 0.294 3.706 8 O -0.448 6.448 9 N -0.288 5.288 10 C -0.073 4.073 11 C -0.126 4.126 12 C -0.187 4.187 13 C 0.069 3.931 14 C -0.531 4.531 15 H 0.099 0.901 16 C -0.187 4.187 17 N -0.476 5.476 18 Si 0.809 3.191 19 H -0.176 1.176 20 H -0.193 1.193 21 H -0.194 1.194 22 C -0.231 4.231 23 C -0.125 4.125 24 H 0.123 0.877 25 H 0.138 0.862 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.254 0.746 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.049 -1.945 14.706 16.877 hybrid contribution 0.439 0.214 -0.999 1.112 sum -7.611 -1.731 13.707 15.773 Atomic orbital electron populations 1.23971 0.94708 1.03331 1.01020 1.21388 0.95544 0.94170 1.00434 1.20721 0.99352 0.94927 1.01518 1.19852 0.96377 0.96063 0.91938 1.22009 0.98379 0.95794 1.03760 1.21864 0.98082 1.02928 0.96351 1.21331 0.79241 0.81282 0.88717 1.90694 1.62617 1.41239 1.50245 1.42914 1.46879 1.16332 1.22671 1.17345 0.95171 1.08146 0.86627 1.20587 0.99454 1.00036 0.92558 1.20910 0.95793 1.04749 0.97206 1.18018 0.90911 0.90684 0.93438 1.19808 1.26503 1.01674 1.05087 0.90116 1.26825 0.95304 0.93796 1.02738 1.69931 1.37548 1.03245 1.36858 0.85065 0.78109 0.79693 0.76211 1.17596 1.19322 1.19364 1.20948 1.01033 1.08256 0.92857 1.20456 0.92535 1.00971 0.98561 0.87685 0.86194 0.93814 0.93309 0.89752 0.90282 0.88426 0.92709 0.93338 0.88801 0.90427 0.74604 0.88803 0.89027 0.90708 0.86916 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.05 13.34 67.78 0.90 -3.15 16 2 C -0.11 -2.86 4.39 -16.49 -0.07 -2.94 16 3 C -0.11 -2.87 8.77 71.24 0.62 -2.25 16 4 C -0.04 -0.92 0.69 -53.68 -0.04 -0.96 16 5 C -0.14 -2.40 6.99 71.98 0.50 -1.89 16 6 C -0.13 -2.48 8.20 71.98 0.59 -1.89 16 7 C 0.51 17.62 6.22 87.66 0.54 18.16 16 8 O -0.57 -26.11 12.73 -3.02 -0.04 -26.15 16 9 N -0.64 -21.48 5.16 -303.11 -1.56 -23.05 16 10 C 0.02 0.91 6.30 38.57 0.24 1.15 16 11 C -0.11 -5.56 8.61 22.14 0.19 -5.37 16 12 C -0.17 -9.54 8.57 22.48 0.19 -9.34 16 13 C 0.07 4.01 5.50 -21.27 -0.12 3.90 16 14 C -0.50 -27.82 9.03 23.39 0.21 -27.60 16 15 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 16 C 0.03 1.33 5.31 85.24 0.45 1.79 16 17 N -0.85 -48.27 10.96 21.82 0.24 -48.03 16 18 Si 0.99 40.28 29.56 68.60 2.03 42.31 16 19 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 21 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 22 C -0.21 -10.19 9.74 22.48 0.22 -9.97 16 23 C -0.11 -4.41 9.90 22.13 0.22 -4.19 16 24 H 0.10 2.02 8.05 -2.91 -0.02 1.99 16 25 H 0.12 2.04 5.71 -2.91 -0.02 2.03 16 26 H 0.04 1.29 6.76 -2.39 -0.02 1.27 16 27 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.08 1.08 7.23 -2.39 -0.02 1.06 16 30 H 0.10 1.13 7.66 -2.39 -0.02 1.11 16 31 H 0.05 1.06 7.34 -2.39 -0.02 1.04 16 32 H 0.05 1.06 6.89 -2.39 -0.02 1.04 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.18 8.05 -2.39 -0.02 1.17 16 35 H 0.42 10.03 7.75 -92.71 -0.72 9.31 16 36 H 0.09 5.07 6.24 -2.91 -0.02 5.05 16 37 H 0.09 5.62 6.46 -2.91 -0.02 5.60 16 38 H 0.28 14.71 8.30 -92.71 -0.77 13.95 16 39 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 40 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -71.41 326.11 5.66 -65.75 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.32 Total: 33.71 kcal Atomic # 6 Polarization: -49.21 SS G_CDS: 4.67 Total: -44.55 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.32 Total: -71.08 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.04 Total: -26.15 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -71.41 5.66 -65.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424542279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.626 kcal (2) G-P(sol) polarization free energy of solvation -71.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds