Wall clock time and date at job start Mon Mar 30 2020 01:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00502 * 2 1 4 4 C 1.50699 * 119.99422 * 180.02562 * 2 1 3 5 5 C 1.53003 * 109.47288 * 359.97438 * 4 2 1 6 6 C 1.53000 * 109.46934 * 239.99600 * 4 2 1 7 7 C 1.50703 * 109.47569 * 119.99869 * 4 2 1 8 8 O 1.21293 * 119.99518 * 359.97438 * 7 4 2 9 9 N 1.34775 * 120.00275 * 180.02562 * 7 4 2 10 10 C 1.39932 * 119.99882 * 184.69821 * 9 7 4 11 11 C 1.39291 * 119.94489 * 324.31203 * 10 9 7 12 12 C 1.38495 * 120.42738 * 179.97438 * 11 10 9 13 13 C 1.37682 * 120.31976 * 0.28707 * 12 11 10 14 14 C 1.40736 * 119.88495 * 359.44405 * 13 12 11 15 15 C 1.41416 * 120.20993 * 180.27841 * 14 13 12 16 16 H 1.07992 * 119.99740 * 331.95730 * 15 14 13 17 17 C 1.39936 * 119.99785 * 151.95674 * 15 14 13 18 18 N 1.30825 * 119.99746 * 161.35252 * 17 15 14 19 19 Si 1.86795 * 120.00186 * 341.35185 * 17 15 14 20 20 H 1.48503 * 109.46881 * 90.53490 * 19 17 15 21 21 H 1.48503 * 109.47295 * 210.53271 * 19 17 15 22 22 H 1.48504 * 109.47386 * 330.53514 * 19 17 15 23 23 C 1.38241 * 119.94926 * 144.29852 * 10 9 7 24 24 H 1.07996 * 120.00432 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.99053 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46905 * 270.00015 * 3 2 1 27 27 H 1.09000 * 109.46738 * 29.99993 * 3 2 1 28 28 H 1.08996 * 109.46938 * 150.00444 * 3 2 1 29 29 H 1.09003 * 109.47211 * 180.02562 * 5 4 2 30 30 H 1.08996 * 109.47125 * 300.00000 * 5 4 2 31 31 H 1.09001 * 109.46801 * 60.00287 * 5 4 2 32 32 H 1.09002 * 109.47413 * 299.99911 * 6 4 2 33 33 H 1.09002 * 109.47268 * 59.99628 * 6 4 2 34 34 H 1.09003 * 109.47037 * 180.02562 * 6 4 2 35 35 H 0.96996 * 119.99809 * 4.68513 * 9 7 4 36 36 H 1.08003 * 119.79100 * 0.02562 * 11 10 9 37 37 H 1.07999 * 119.83555 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.05450 * 179.70051 * 13 12 11 39 39 H 0.96994 * 120.00419 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.15813 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 1.0691 -2.4680 -0.0005 6 6 2.9431 -1.3868 1.2486 7 6 2.9298 -1.3847 -1.2311 8 8 2.9346 -0.4714 -2.0293 9 7 3.6985 -2.4709 -1.4451 10 6 4.5760 -2.5033 -2.5345 11 6 4.2143 -1.9003 -3.7369 12 6 5.0753 -1.9260 -4.8214 13 6 6.2969 -2.5536 -4.7243 14 6 6.6784 -3.1622 -3.5140 15 6 7.9340 -3.8036 -3.4048 16 1 8.3997 -4.2313 -4.2802 17 6 8.5728 -3.8840 -2.1623 18 7 9.5225 -4.7632 -1.9709 19 14 8.0697 -2.7361 -0.7773 20 1 6.9943 -3.3713 0.0260 21 1 9.2427 -2.4654 0.0921 22 1 7.5719 -1.4590 -1.3488 23 6 5.8007 -3.1335 -2.4157 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5399 0.9354 0.0004 26 1 2.2453 1.6196 -1.0277 27 1 1.4746 2.0647 0.5138 28 1 3.0160 1.1746 0.5137 29 1 1.6140 -3.4121 -0.0004 30 1 0.4428 -2.4105 0.8897 31 1 0.4421 -2.4100 -0.8902 32 1 3.6515 -0.5584 1.2489 33 1 2.3165 -1.3293 2.1387 34 1 3.4883 -2.3306 1.2480 35 1 3.6435 -3.2300 -0.8438 36 1 3.2565 -1.4089 -3.8240 37 1 4.7849 -1.4558 -5.7493 38 1 6.9631 -2.5752 -5.5741 39 1 9.9656 -4.8188 -1.1099 40 1 6.0823 -3.6007 -1.4836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424867439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:22 Heat of formation + Delta-G solvation = -23.171188 kcal Electronic energy + Delta-G solvation = -21173.634216 eV Core-core repulsion = 18145.467147 eV Total energy + Delta-G solvation = -3028.167068 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.77555 -39.58290 -37.70427 -36.08629 -35.24487 -32.99975 -32.22223 -30.16669 -29.45140 -27.10141 -26.93823 -25.16761 -23.44660 -22.97087 -21.23350 -19.49027 -19.32946 -17.93546 -17.44824 -17.18283 -16.53277 -16.31636 -16.15181 -15.60524 -15.29746 -14.86282 -14.75788 -14.38681 -14.02057 -13.97360 -13.51691 -13.36110 -13.28957 -13.12032 -12.99328 -12.71676 -12.67553 -12.60163 -12.32302 -12.06374 -11.95464 -11.74406 -11.62990 -11.05432 -10.99519 -10.63688 -9.93233 -9.52228 -8.95904 -8.91874 -6.53264 0.62323 0.78871 1.19457 1.25317 1.33038 1.45124 1.67034 2.08229 2.24061 2.60241 3.43327 3.49810 3.71803 3.86642 4.03354 4.26858 4.31774 4.54291 4.63664 4.65292 4.68314 4.73458 4.77188 4.80159 4.82525 4.84558 4.96054 5.00689 5.05394 5.14941 5.19763 5.25507 5.27875 5.63177 5.68639 5.71610 5.84915 5.90533 5.94452 6.21232 6.32549 6.56949 6.70578 6.80159 7.19667 8.15318 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.005698 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.198666 B = 4912.706539 C = 5531.451868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 C -0.115 4.115 4 C -0.041 4.041 5 C -0.143 4.143 6 C -0.141 4.141 7 C 0.515 3.485 8 O -0.550 6.550 9 N -0.665 5.665 10 C 0.175 3.825 11 C -0.232 4.232 12 C -0.072 4.072 13 C -0.230 4.230 14 C 0.088 3.912 15 C -0.483 4.483 16 H 0.061 0.939 17 C 0.055 3.945 18 N -0.843 5.843 19 Si 0.962 3.038 20 H -0.248 1.248 21 H -0.276 1.276 22 H -0.271 1.271 23 C -0.275 4.275 24 H 0.119 0.881 25 H 0.109 0.891 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.416 0.584 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.295 0.705 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.325 5.420 10.232 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.116 4.116 3 C -0.172 4.172 4 C -0.044 4.044 5 C -0.200 4.200 6 C -0.198 4.198 7 C 0.304 3.696 8 O -0.427 6.427 9 N -0.311 5.311 10 C 0.081 3.919 11 C -0.253 4.253 12 C -0.090 4.090 13 C -0.250 4.250 14 C 0.085 3.915 15 C -0.512 4.512 16 H 0.080 0.920 17 C -0.161 4.161 18 N -0.469 5.469 19 Si 0.787 3.213 20 H -0.173 1.173 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.296 4.296 24 H 0.137 0.863 25 H 0.128 0.872 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.254 0.746 36 H 0.134 0.866 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.105 0.895 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.117 5.926 9.836 19.789 hybrid contribution 0.643 -0.148 0.256 0.707 sum -15.474 5.778 10.092 19.356 Atomic orbital electron populations 1.24017 0.94455 1.03444 1.00422 1.21290 0.95529 0.93704 1.01030 1.20817 0.99886 0.94918 1.01564 1.19900 0.95487 0.96745 0.92269 1.22012 0.98443 0.95441 1.04093 1.21927 0.99360 1.02631 0.95921 1.21366 0.79512 0.80799 0.87948 1.90659 1.65573 1.38757 1.47663 1.43551 1.39820 1.19650 1.28029 1.17552 0.89150 0.97974 0.87174 1.20734 1.01933 1.09965 0.92638 1.20895 0.93208 0.97026 0.97895 1.21232 0.98789 1.06180 0.98768 1.17664 0.92403 0.89299 0.92162 1.19457 1.03344 1.32789 0.95613 0.92045 1.26695 0.93517 0.94883 1.00977 1.69710 1.21274 1.29057 1.26869 0.85590 0.77879 0.79973 0.77868 1.17270 1.20304 1.19546 1.20911 0.94516 1.13556 1.00613 0.86263 0.87247 0.92938 0.90268 0.92902 0.90845 0.88262 0.92098 0.93062 0.88455 0.91162 0.74628 0.86636 0.85359 0.87557 0.89452 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.35 13.29 67.78 0.90 -2.45 16 2 C -0.12 -2.58 4.42 -16.49 -0.07 -2.66 16 3 C -0.12 -2.77 9.13 71.24 0.65 -2.12 16 4 C -0.04 -0.92 0.73 -53.67 -0.04 -0.96 16 5 C -0.14 -2.33 7.02 71.98 0.51 -1.83 16 6 C -0.14 -2.70 8.20 71.98 0.59 -2.11 16 7 C 0.51 16.82 6.21 87.66 0.54 17.37 16 8 O -0.55 -22.11 12.16 -3.07 -0.04 -22.14 16 9 N -0.67 -22.66 5.11 -303.64 -1.55 -24.21 16 10 C 0.18 7.58 6.28 38.10 0.24 7.82 16 11 C -0.23 -10.22 8.70 22.58 0.20 -10.02 16 12 C -0.07 -3.11 10.02 22.20 0.22 -2.88 16 13 C -0.23 -11.04 9.79 22.75 0.22 -10.81 16 14 C 0.09 4.57 5.14 -21.31 -0.11 4.46 16 15 C -0.48 -27.16 9.57 23.46 0.22 -26.94 16 16 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 17 C 0.05 2.92 5.41 85.25 0.46 3.38 16 18 N -0.84 -45.63 13.93 21.82 0.30 -45.32 16 19 Si 0.96 43.10 24.55 68.60 1.68 44.78 16 20 H -0.25 -10.01 6.44 99.48 0.64 -9.37 16 21 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.27 -13.08 7.04 99.48 0.70 -12.38 16 23 C -0.27 -13.09 7.21 22.85 0.16 -12.92 16 24 H 0.12 1.73 5.69 -2.91 -0.02 1.71 16 25 H 0.11 1.71 8.04 -2.91 -0.02 1.69 16 26 H 0.05 1.54 7.38 -2.39 -0.02 1.52 16 27 H 0.08 1.48 8.06 -2.39 -0.02 1.46 16 28 H 0.05 1.30 6.64 -2.39 -0.02 1.28 16 29 H 0.07 1.07 7.47 -2.39 -0.02 1.05 16 30 H 0.10 1.11 7.50 -2.39 -0.02 1.09 16 31 H 0.06 1.08 7.50 -2.39 -0.02 1.06 16 32 H 0.05 1.13 6.80 -2.39 -0.02 1.11 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.26 7.68 -2.39 -0.02 1.24 16 35 H 0.42 11.38 7.68 -92.71 -0.71 10.66 16 36 H 0.12 5.03 6.25 -2.91 -0.02 5.01 16 37 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 38 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 39 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 40 H 0.11 5.01 4.41 -2.91 -0.01 5.00 16 Total: -1.00 -65.64 319.12 5.37 -60.28 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.27 Total: 29.29 kcal Atomic # 6 Polarization: -47.37 SS G_CDS: 4.70 Total: -42.67 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -1.25 Total: -69.54 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.04 Total: -22.14 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.68 Total: 44.78 kcal Total: -65.64 5.37 -60.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424867439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.108 kcal (2) G-P(sol) polarization free energy of solvation -65.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds