Wall clock time and date at job start Mon Mar 30 2020 01:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47104 * 2 1 4 4 C 1.52992 * 109.47515 * 240.00051 * 2 1 3 5 5 C 1.50702 * 109.47397 * 59.99905 * 4 2 1 6 6 H 1.08005 * 119.99550 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00370 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99783 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47176 * 60.00044 * 9 7 5 11 11 H 1.48502 * 109.47236 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47164 * 300.00053 * 9 7 5 13 13 C 1.53007 * 109.47089 * 119.99637 * 2 1 3 14 14 N 1.46494 * 109.47044 * 300.00305 * 13 2 1 15 15 C 1.39758 * 119.99819 * 179.97438 * 14 13 2 16 16 C 1.39372 * 119.73617 * 0.02562 * 15 14 13 17 17 C 1.36637 * 120.34345 * 180.02562 * 16 15 14 18 18 C 1.39448 * 119.81225 * 359.95350 * 17 16 15 19 19 C 1.46849 * 134.25925 * 180.02562 * 18 17 16 20 20 C 1.33955 * 106.19718 * 180.02562 * 19 18 17 21 21 O 1.34519 * 110.15620 * 0.26673 * 20 19 18 22 22 C 1.34832 * 110.87930 * 359.54325 * 21 20 19 23 23 C 1.38482 * 119.74108 * 180.02562 * 15 14 13 24 24 H 1.09008 * 109.47426 * 300.00240 * 1 2 3 25 25 H 1.09000 * 109.47428 * 60.00030 * 1 2 3 26 26 H 1.09005 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47243 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47410 * 299.99983 * 3 2 1 29 29 H 1.09004 * 109.46945 * 60.00041 * 3 2 1 30 30 H 1.09001 * 109.47625 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.47026 * 300.00164 * 4 2 1 32 32 H 0.96999 * 120.00099 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46906 * 179.97438 * 13 2 1 34 34 H 1.09005 * 109.46714 * 60.00288 * 13 2 1 35 35 H 0.97000 * 120.00293 * 359.97438 * 14 13 2 36 36 H 1.08000 * 119.83406 * 359.97438 * 16 15 14 37 37 H 1.08000 * 120.09145 * 179.97438 * 17 16 15 38 38 H 1.07997 * 126.90152 * 0.02562 * 19 18 17 39 39 H 1.08002 * 124.91854 * 179.97438 * 20 19 18 40 40 H 1.08003 * 120.12102 * 0.04361 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8705 -0.4822 -3.7319 8 7 2.6258 -1.5520 -3.8525 9 14 1.2472 0.3980 -5.2571 10 1 1.7421 1.7981 -5.2576 11 1 1.7414 -0.3027 -6.4696 12 1 -0.2378 0.3979 -5.2566 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8888 -0.5083 3.7148 16 6 2.6904 -1.6419 3.8363 17 6 3.0272 -2.1200 5.0712 18 6 2.5671 -1.4695 6.2156 19 6 2.7269 -1.6964 7.6577 20 6 2.0380 -0.7229 8.2677 21 8 1.4630 0.0803 7.3545 22 6 1.7583 -0.3261 6.1033 23 6 1.4237 0.1484 4.8418 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 2.8596 -1.8838 -4.7335 33 1 3.1300 -0.7216 1.2491 34 1 1.6766 -1.7489 1.2493 35 1 0.9942 0.7583 2.3564 36 1 3.0466 -2.1456 2.9499 37 1 3.6483 -2.9990 5.1607 38 1 3.2873 -2.4889 8.1312 39 1 1.9524 -0.6033 9.3376 40 1 0.8023 1.0259 4.7401 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442997339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:08 Heat of formation + Delta-G solvation = 13.605357 kcal Electronic energy + Delta-G solvation = -20245.224445 eV Core-core repulsion = 17218.652128 eV Total energy + Delta-G solvation = -3026.572318 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.25582 -38.88083 -37.07073 -34.12859 -32.51402 -31.75353 -30.36229 -28.27363 -26.96025 -26.52460 -25.66096 -23.34154 -22.86098 -21.49439 -20.90709 -18.33556 -17.36452 -17.30141 -16.41419 -16.03758 -15.97710 -14.86876 -14.59854 -14.39792 -14.23097 -13.68854 -13.31089 -13.00399 -12.92227 -12.83727 -12.73970 -12.08508 -11.99150 -11.85203 -11.22302 -11.02886 -10.94362 -10.88964 -10.66670 -10.39841 -10.37481 -10.28752 -9.88539 -9.24439 -9.21257 -8.97795 -8.47012 -8.39163 -7.10692 -6.03709 -4.04834 1.13559 1.58606 2.46599 2.79752 3.30007 3.35361 3.36881 3.75869 3.89775 4.42668 4.57617 4.80852 5.08752 5.23211 5.32039 5.33709 5.38116 5.49184 5.55659 5.62559 5.74157 5.85201 6.10406 6.14453 6.17146 6.25787 6.29664 6.35127 6.45074 6.49150 6.60784 6.61182 6.64691 7.00898 7.04469 7.07092 7.22287 7.48561 7.58110 7.70951 7.89825 7.94763 8.37195 8.99536 9.58550 11.07788 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.050552 B = 0.003155 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.756792 B = 8872.305794 C = 9229.698043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.130 3.870 14 N -0.730 5.730 15 C 0.257 3.743 16 C -0.200 4.200 17 C -0.024 4.024 18 C -0.200 4.200 19 C -0.193 4.193 20 C -0.024 4.024 21 O -0.203 6.203 22 C 0.104 3.896 23 C -0.214 4.214 24 H 0.030 0.970 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.400 0.600 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.151 0.849 39 H 0.200 0.800 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.635 0.905 19.770 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.006 3.994 14 N -0.358 5.358 15 C 0.150 3.850 16 C -0.221 4.221 17 C -0.043 4.043 18 C -0.203 4.203 19 C -0.213 4.213 20 C -0.089 4.089 21 O -0.104 6.104 22 C 0.056 3.944 23 C -0.239 4.239 24 H 0.049 0.951 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.237 0.763 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.169 0.831 39 H 0.217 0.783 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.636 0.899 19.475 19.506 hybrid contribution -0.365 0.516 -0.864 1.070 sum -1.000 1.415 18.611 18.692 Atomic orbital electron populations 1.21751 0.95237 1.01138 1.00276 1.20870 0.95522 0.95889 0.94852 1.21752 1.00470 0.95902 1.00276 1.19086 0.96261 0.95171 0.89543 1.21148 1.31273 1.12093 0.90538 0.92327 1.25000 0.95276 0.95069 0.99083 1.69942 1.36959 1.22983 1.23597 0.86709 0.79180 0.79789 0.82623 1.20306 1.21365 1.20312 1.21672 0.98311 0.95880 0.83496 1.45097 1.56068 1.32526 1.02078 1.17445 0.91158 0.91391 0.85017 1.20449 1.04729 0.98842 0.98107 1.20016 0.96414 0.97736 0.90103 1.19691 1.06943 1.00002 0.93669 1.22417 1.05082 1.01822 0.91930 1.23715 0.98673 0.92250 0.94219 1.83980 1.62770 1.49979 1.13687 1.19155 0.96756 0.94199 0.84290 1.18940 1.12278 1.05857 0.86790 0.95144 0.91518 0.93403 0.93406 0.91512 0.95151 0.96398 0.96395 0.92962 0.92315 0.92318 0.76342 0.85073 0.85766 0.83133 0.78289 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.15 0.30 -1.92 16 2 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.87 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.40 7.65 -34.44 -0.26 -13.67 16 6 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.13 2.08 3.79 -4.04 -0.02 2.06 16 14 N -0.73 -10.33 5.13 -58.60 -0.30 -10.63 16 15 C 0.26 3.65 6.65 -83.73 -0.56 3.10 16 16 C -0.20 -2.73 9.24 -39.74 -0.37 -3.09 16 17 C -0.02 -0.30 10.04 -39.71 -0.40 -0.70 16 18 C -0.20 -2.69 6.40 -105.11 -0.67 -3.37 16 19 C -0.19 -2.08 11.14 -37.61 -0.42 -2.50 16 20 C -0.02 -0.24 11.96 29.23 0.35 0.11 16 21 O -0.20 -2.67 10.59 3.65 0.04 -2.63 16 22 C 0.10 1.49 7.41 -38.50 -0.29 1.20 16 23 C -0.21 -2.98 9.90 -39.26 -0.39 -3.37 16 24 H 0.03 0.45 6.86 -51.92 -0.36 0.09 16 25 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 34 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 35 H 0.40 5.31 6.16 -40.82 -0.25 5.06 16 36 H 0.13 1.71 6.68 -52.49 -0.35 1.36 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -29.45 324.63 -8.01 -37.46 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.64 Total: 3.39 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -2.71 Total: -23.22 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.44 Total: -35.90 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.45 -8.01 -37.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442997339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.067 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds