Wall clock time and date at job start Mon Mar 30 2020 01:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47104 * 2 1 4 4 C 1.52992 * 109.47515 * 240.00051 * 2 1 3 5 5 C 1.50702 * 109.47397 * 59.99905 * 4 2 1 6 6 H 1.08005 * 119.99550 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00370 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99783 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47176 * 60.00044 * 9 7 5 11 11 H 1.48502 * 109.47236 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47164 * 300.00053 * 9 7 5 13 13 C 1.53007 * 109.47089 * 119.99637 * 2 1 3 14 14 N 1.46494 * 109.47044 * 300.00305 * 13 2 1 15 15 C 1.39758 * 119.99819 * 179.97438 * 14 13 2 16 16 C 1.39372 * 119.73617 * 0.02562 * 15 14 13 17 17 C 1.36637 * 120.34345 * 180.02562 * 16 15 14 18 18 C 1.39448 * 119.81225 * 359.95350 * 17 16 15 19 19 C 1.46849 * 134.25925 * 180.02562 * 18 17 16 20 20 C 1.33955 * 106.19718 * 180.02562 * 19 18 17 21 21 O 1.34519 * 110.15620 * 0.26673 * 20 19 18 22 22 C 1.34832 * 110.87930 * 359.54325 * 21 20 19 23 23 C 1.38482 * 119.74108 * 180.02562 * 15 14 13 24 24 H 1.09008 * 109.47426 * 300.00240 * 1 2 3 25 25 H 1.09000 * 109.47428 * 60.00030 * 1 2 3 26 26 H 1.09005 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47243 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47410 * 299.99983 * 3 2 1 29 29 H 1.09004 * 109.46945 * 60.00041 * 3 2 1 30 30 H 1.09001 * 109.47625 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.47026 * 300.00164 * 4 2 1 32 32 H 0.96999 * 120.00099 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46906 * 179.97438 * 13 2 1 34 34 H 1.09005 * 109.46714 * 60.00288 * 13 2 1 35 35 H 0.97000 * 120.00293 * 359.97438 * 14 13 2 36 36 H 1.08000 * 119.83406 * 359.97438 * 16 15 14 37 37 H 1.08000 * 120.09145 * 179.97438 * 17 16 15 38 38 H 1.07997 * 126.90152 * 0.02562 * 19 18 17 39 39 H 1.08002 * 124.91854 * 179.97438 * 20 19 18 40 40 H 1.08003 * 120.12102 * 0.04361 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8705 -0.4822 -3.7319 8 7 2.6258 -1.5520 -3.8525 9 14 1.2472 0.3980 -5.2571 10 1 1.7421 1.7981 -5.2576 11 1 1.7414 -0.3027 -6.4696 12 1 -0.2378 0.3979 -5.2566 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8888 -0.5083 3.7148 16 6 2.6904 -1.6419 3.8363 17 6 3.0272 -2.1200 5.0712 18 6 2.5671 -1.4695 6.2156 19 6 2.7269 -1.6964 7.6577 20 6 2.0380 -0.7229 8.2677 21 8 1.4630 0.0803 7.3545 22 6 1.7583 -0.3261 6.1033 23 6 1.4237 0.1484 4.8418 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 2.8596 -1.8838 -4.7335 33 1 3.1300 -0.7216 1.2491 34 1 1.6766 -1.7489 1.2493 35 1 0.9942 0.7583 2.3564 36 1 3.0466 -2.1456 2.9499 37 1 3.6483 -2.9990 5.1607 38 1 3.2873 -2.4889 8.1312 39 1 1.9524 -0.6033 9.3376 40 1 0.8023 1.0259 4.7401 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000442997339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:07 Heat of formation + Delta-G solvation = -1.995502 kcal Electronic energy + Delta-G solvation = -20245.900949 eV Core-core repulsion = 17218.652128 eV Total energy + Delta-G solvation = -3027.248822 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.17760 -40.06179 -38.40567 -35.46493 -34.23808 -32.86191 -31.35842 -29.58719 -28.61674 -27.96760 -27.00294 -24.78102 -24.21029 -22.49553 -21.88817 -19.81161 -18.39592 -18.35268 -18.22642 -17.27067 -16.92593 -16.51882 -15.90672 -15.76367 -15.31652 -14.89837 -14.59082 -14.35191 -14.32316 -14.06578 -13.93672 -13.61185 -13.31978 -12.86175 -12.82137 -12.73180 -12.57431 -12.32505 -12.22996 -12.00428 -11.83630 -11.60212 -11.28388 -10.98481 -10.84744 -10.49958 -10.20433 -9.46029 -8.15482 -8.14184 -6.20972 0.18743 0.54687 1.42201 1.43378 1.50668 1.60796 1.87795 2.43363 2.67185 2.87188 3.20464 3.71192 3.93928 3.98681 4.11352 4.13942 4.22905 4.28502 4.45812 4.57773 4.72003 4.73486 4.76047 4.79729 4.93706 4.97442 5.11863 5.12122 5.23392 5.33192 5.42883 5.48937 5.50008 5.52510 5.54878 5.58337 5.70049 5.81488 5.90506 6.22737 6.32383 6.40206 6.82573 6.93789 7.46429 8.97878 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.050552 B = 0.003155 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.756792 B = 8872.305794 C = 9229.698043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.042 3.958 5 C -0.516 4.516 6 H 0.067 0.933 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.954 3.046 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.269 1.269 13 C 0.145 3.855 14 N -0.727 5.727 15 C 0.244 3.756 16 C -0.212 4.212 17 C -0.027 4.027 18 C -0.214 4.214 19 C -0.206 4.206 20 C -0.016 4.016 21 O -0.216 6.216 22 C 0.078 3.922 23 C -0.217 4.217 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.062 0.938 30 H -0.010 1.010 31 H -0.010 1.010 32 H 0.260 0.740 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.406 0.594 36 H 0.131 0.869 37 H 0.147 0.853 38 H 0.178 0.822 39 H 0.245 0.755 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 1.813 21.793 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.005 3.995 5 C -0.555 4.555 6 H 0.085 0.915 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.194 1.194 13 C 0.021 3.979 14 N -0.356 5.356 15 C 0.138 3.862 16 C -0.234 4.234 17 C -0.046 4.046 18 C -0.216 4.216 19 C -0.225 4.225 20 C -0.079 4.079 21 O -0.118 6.118 22 C 0.030 3.970 23 C -0.241 4.241 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.243 0.757 36 H 0.149 0.851 37 H 0.165 0.835 38 H 0.196 0.804 39 H 0.261 0.739 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.288 1.824 21.526 21.641 hybrid contribution -0.141 0.199 -1.329 1.352 sum -1.429 2.023 20.196 20.348 Atomic orbital electron populations 1.21675 0.94185 1.00896 1.01064 1.20677 0.96264 0.96116 0.93431 1.21676 0.99966 0.95116 1.01063 1.18950 0.94440 0.94231 0.91913 1.21573 1.30472 1.12045 0.91364 0.91469 1.25870 0.95684 0.95857 1.02464 1.70085 1.38704 1.24765 1.24144 0.85670 0.78911 0.78799 0.78693 1.19366 1.21512 1.19381 1.21302 0.97855 0.95407 0.83330 1.44807 1.56623 1.32733 1.01441 1.17505 0.91904 0.91915 0.84902 1.20591 1.05091 0.99055 0.98676 1.20283 0.96342 0.98320 0.89638 1.20145 1.06453 0.99726 0.95303 1.22793 1.06023 1.03145 0.90554 1.24656 0.96813 0.90887 0.95543 1.83983 1.63281 1.50867 1.13684 1.19397 0.97692 0.95025 0.84885 1.19073 1.12148 1.06082 0.86825 0.91913 0.93062 0.94190 0.94187 0.93055 0.91921 0.99126 0.99125 0.93130 0.92879 0.92884 0.75713 0.85135 0.83539 0.80426 0.73867 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 2 C -0.06 -2.37 0.54 -52.18 -0.03 -2.40 16 3 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.52 -27.42 7.65 25.60 0.20 -27.23 16 6 H 0.07 3.39 5.68 -2.91 -0.02 3.37 16 7 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 8 N -0.94 -55.86 13.29 21.45 0.28 -55.57 16 9 Si 0.95 43.38 29.54 68.60 2.03 45.40 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 C 0.15 4.65 3.79 86.38 0.33 4.98 16 14 N -0.73 -19.81 5.13 -339.31 -1.74 -21.56 16 15 C 0.24 6.74 6.65 38.21 0.25 7.00 16 16 C -0.21 -5.72 9.24 22.17 0.20 -5.51 16 17 C -0.03 -0.66 10.04 22.19 0.22 -0.44 16 18 C -0.21 -5.42 6.40 -20.18 -0.13 -5.55 16 19 C -0.21 -3.87 11.14 23.55 0.26 -3.61 16 20 C -0.02 -0.26 11.96 66.84 0.80 0.54 16 21 O -0.22 -5.29 10.59 -9.85 -0.10 -5.39 16 22 C 0.08 2.14 7.41 22.97 0.17 2.31 16 23 C -0.22 -5.83 9.90 22.48 0.22 -5.61 16 24 H 0.06 1.72 6.86 -2.38 -0.02 1.71 16 25 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 26 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 29 H 0.06 1.72 6.86 -2.38 -0.02 1.71 16 30 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 32 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.05 1.75 7.93 -2.39 -0.02 1.73 16 34 H 0.05 1.75 7.93 -2.38 -0.02 1.73 16 35 H 0.41 9.97 6.16 -92.71 -0.57 9.40 16 36 H 0.13 3.44 6.68 -2.91 -0.02 3.42 16 37 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.25 1.55 8.06 -2.91 -0.02 1.52 16 40 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -64.69 324.63 5.18 -59.51 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.47 Total: 17.65 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 4.24 Total: -40.05 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -1.46 Total: -77.13 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.10 Total: -5.39 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -64.69 5.18 -59.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442997339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.519 kcal (2) G-P(sol) polarization free energy of solvation -64.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds