Wall clock time and date at job start Mon Mar 30 2020 02:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46942 * 2 1 4 4 H 1.09000 * 115.55893 * 29.31769 * 3 2 1 5 5 C 1.52995 * 117.49847 * 243.62708 * 3 2 1 6 6 C 1.53000 * 117.49612 * 175.00097 * 3 2 1 7 7 H 1.08991 * 117.51935 * 0.02562 * 6 3 2 8 8 C 1.53005 * 117.49458 * 214.97987 * 6 3 2 9 9 N 1.46503 * 109.46702 * 174.98965 * 8 6 3 10 10 C 1.34779 * 119.99916 * 180.02562 * 9 8 6 11 11 O 1.21588 * 119.99510 * 359.97438 * 10 9 8 12 12 C 1.47633 * 119.99917 * 179.97438 * 10 9 8 13 13 C 1.40015 * 119.89410 * 179.97438 * 12 10 9 14 14 C 1.36316 * 120.10741 * 180.02562 * 13 12 10 15 15 C 1.40889 * 119.89072 * 359.97438 * 14 13 12 16 16 C 1.41109 * 120.10076 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00168 * 335.43760 * 16 15 14 18 18 C 1.40236 * 119.99876 * 155.15997 * 16 15 14 19 19 N 1.30646 * 119.99969 * 342.68862 * 18 16 15 20 20 Si 1.86797 * 119.99831 * 162.68180 * 18 16 15 21 21 H 1.48496 * 109.47170 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47119 * 120.00380 * 20 18 16 23 23 H 1.48501 * 109.47110 * 239.99918 * 20 18 16 24 24 C 1.40884 * 119.79610 * 0.24890 * 15 14 13 25 25 C 1.36319 * 119.88941 * 359.51789 * 24 15 14 26 26 H 1.09004 * 109.47020 * 299.99684 * 1 2 3 27 27 H 1.08991 * 109.47497 * 59.99983 * 1 2 3 28 28 H 1.09004 * 109.47179 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47020 * 240.00315 * 2 1 3 30 30 H 1.09000 * 109.47394 * 120.00018 * 2 1 3 31 31 H 1.08996 * 117.49939 * 145.02271 * 5 3 2 32 32 H 1.09004 * 117.51785 * 359.97438 * 5 3 2 33 33 H 1.08998 * 109.47015 * 54.99076 * 8 6 3 34 34 H 1.09003 * 109.46851 * 294.98923 * 8 6 3 35 35 H 0.97002 * 120.00225 * 359.97438 * 9 8 6 36 36 H 1.07997 * 119.94819 * 359.97438 * 13 12 10 37 37 H 1.08000 * 120.05309 * 179.97438 * 14 13 12 38 38 H 0.96996 * 119.99623 * 180.02562 * 19 18 16 39 39 H 1.08002 * 120.05730 * 179.74754 * 24 15 14 40 40 H 1.08004 * 119.94685 * 180.20645 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1717 0.4815 5 6 2.8438 1.9077 -1.2159 6 6 3.5501 1.6580 0.1183 7 1 4.1806 0.7723 0.1956 8 6 4.0300 2.8805 0.9033 9 7 5.4910 2.8512 1.0075 10 6 6.1398 3.8349 1.6617 11 8 5.5125 4.7468 2.1649 12 6 7.6120 3.8050 1.7672 13 6 8.2838 4.8284 2.4468 14 6 9.6431 4.8054 2.5465 15 6 10.3721 3.7494 1.9646 16 6 11.7793 3.7215 2.0646 17 1 12.3285 4.6397 2.2125 18 6 12.4644 2.5010 1.9776 19 7 11.8198 1.3768 2.1438 20 14 14.2985 2.4825 1.6241 21 1 14.7885 3.8767 1.4782 22 1 15.0123 1.8223 2.7464 23 1 14.5528 1.7338 0.3671 24 6 9.6920 2.7245 1.2777 25 6 8.3321 2.7535 1.1874 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.7211 2.9428 -1.5343 32 1 3.0099 1.1861 -2.0158 33 1 3.5940 2.8649 1.9021 34 1 3.7207 3.7887 0.3859 35 1 5.9914 2.1234 0.6063 36 1 7.7242 5.6376 2.8922 37 1 10.1605 5.5954 3.0705 38 1 12.2937 0.5327 2.0840 39 1 10.2469 1.9151 0.8265 40 1 7.8096 1.9665 0.6639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452765374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:36 Heat of formation + Delta-G solvation = -19.123263 kcal Electronic energy + Delta-G solvation = -19602.967866 eV Core-core repulsion = 16574.976330 eV Total energy + Delta-G solvation = -3027.991537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -39.24830 -38.19136 -37.00952 -34.06408 -33.85983 -32.13309 -30.23991 -29.43701 -27.16656 -25.34381 -23.98100 -21.93143 -21.15281 -20.72731 -20.65408 -19.39522 -17.52574 -16.86800 -15.80469 -15.44803 -14.93644 -14.83256 -14.40017 -14.19741 -13.95986 -13.54582 -13.17606 -13.09553 -12.71965 -12.32406 -12.29958 -12.09830 -11.89173 -11.58888 -11.42400 -11.36300 -11.27882 -11.16426 -10.94486 -10.64668 -10.12968 -10.06498 -9.97860 -9.55963 -9.35584 -8.93611 -8.53892 -7.71405 -7.53274 -7.03216 -4.59923 2.23935 2.90643 2.95089 3.00729 3.04183 3.48763 3.74223 3.86662 3.90962 4.46303 4.57345 4.68764 4.78298 4.95951 5.11324 5.17800 5.28708 5.51444 5.57452 5.61972 5.70317 5.76012 5.85606 5.88564 5.91900 6.01977 6.06608 6.15151 6.25061 6.32751 6.77314 6.83260 6.96352 7.07816 7.14139 7.44309 7.66267 7.80026 7.86745 8.07638 8.26943 8.40527 8.63632 8.75834 9.09980 9.88873 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028502 B = 0.003118 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.138103 B = 8977.183830 C = 9718.572304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.143 4.143 4 H 0.106 0.894 5 C -0.172 4.172 6 C -0.162 4.162 7 H 0.109 0.891 8 C 0.155 3.845 9 N -0.740 5.740 10 C 0.571 3.429 11 O -0.577 6.577 12 C -0.283 4.283 13 C -0.022 4.022 14 C -0.239 4.239 15 C 0.128 3.872 16 C -0.442 4.442 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.773 5.773 20 Si 0.913 3.087 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.269 1.269 24 C -0.178 4.178 25 C -0.062 4.062 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.398 0.602 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.286 0.714 39 H 0.120 0.880 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.686 -5.221 -5.695 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.162 4.162 4 H 0.124 0.876 5 C -0.209 4.209 6 C -0.181 4.181 7 H 0.127 0.873 8 C 0.031 3.969 9 N -0.393 5.393 10 C 0.365 3.635 11 O -0.460 6.460 12 C -0.288 4.288 13 C -0.042 4.042 14 C -0.258 4.258 15 C 0.125 3.875 16 C -0.470 4.470 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.396 5.396 20 Si 0.737 3.263 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.198 4.198 25 C -0.082 4.082 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.233 0.767 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.112 -4.840 -5.322 14.087 hybrid contribution 1.052 -0.589 -0.318 1.247 sum -11.059 -5.429 -5.639 13.549 Atomic orbital electron populations 1.21743 0.95500 1.01488 1.01924 1.21131 0.95927 0.94096 1.02056 1.22470 0.93039 0.98189 1.02509 0.87597 1.23242 1.03840 1.02475 0.91373 1.22604 0.95312 1.00097 1.00048 0.87267 1.20703 0.81434 0.95526 0.99227 1.45889 1.06310 1.27996 1.59087 1.18593 0.88305 0.80344 0.76210 1.90629 1.69456 1.36308 1.49578 1.18907 0.90042 1.02558 1.17289 1.20367 0.93993 0.95408 0.94395 1.20724 0.93134 1.03039 1.08935 1.17797 0.93227 0.90156 0.86331 1.19877 0.91979 0.94054 1.41112 0.89689 1.26105 1.01745 0.94966 0.91908 1.69751 1.39034 0.99190 1.31607 0.86168 0.81146 0.80000 0.79012 1.18065 1.19686 1.19396 1.20978 0.92724 1.02012 1.04039 1.20475 0.94786 0.95313 0.97581 0.92636 0.92662 0.92797 0.91868 0.91534 0.88654 0.88761 0.91796 0.92027 0.76717 0.88108 0.88374 0.90312 0.86198 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.87 37.16 0.37 -0.70 16 2 C -0.09 -0.77 6.22 -26.73 -0.17 -0.94 16 3 C -0.14 -1.35 5.46 -90.62 -0.49 -1.85 16 4 H 0.11 0.99 8.07 -51.93 -0.42 0.58 16 5 C -0.17 -1.67 9.82 -26.73 -0.26 -1.93 16 6 C -0.16 -1.80 5.57 -90.61 -0.50 -2.30 16 7 H 0.11 1.17 8.04 -51.93 -0.42 0.75 16 8 C 0.16 2.24 5.96 -4.04 -0.02 2.22 16 9 N -0.74 -12.68 5.50 -61.31 -0.34 -13.02 16 10 C 0.57 12.43 7.76 -12.42 -0.10 12.33 16 11 O -0.58 -14.09 16.32 5.29 0.09 -14.00 16 12 C -0.28 -6.57 5.89 -104.73 -0.62 -7.19 16 13 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 14 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 15 C 0.13 3.28 5.57 -106.80 -0.60 2.69 16 16 C -0.44 -11.04 9.04 -37.74 -0.34 -11.38 16 17 H 0.09 2.03 7.91 -52.48 -0.42 1.61 16 18 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 19 N -0.77 -18.51 10.95 55.56 0.61 -17.90 16 20 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 21 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 22 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 23 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 24 C -0.18 -4.38 8.63 -39.27 -0.34 -4.72 16 25 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.49 7.88 -51.93 -0.41 0.08 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.93 8.03 -51.93 -0.42 0.51 16 32 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.93 7.88 -51.93 -0.41 0.52 16 35 H 0.40 6.08 6.40 -40.82 -0.26 5.82 16 36 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 37 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 38 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 39 H 0.12 2.98 6.17 -52.49 -0.32 2.65 16 40 H 0.09 1.67 6.37 -52.48 -0.33 1.34 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -28.22 336.82 -9.79 -38.01 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -5.89 Total: 10.64 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -4.30 Total: -21.04 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.27 Total: -30.92 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.09 Total: -14.00 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.22 -9.79 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452765374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.882 kcal (2) G-P(sol) polarization free energy of solvation -28.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds