Wall clock time and date at job start Mon Mar 30 2020 02:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46942 * 2 1 4 4 H 1.09000 * 115.55893 * 29.31769 * 3 2 1 5 5 C 1.52995 * 117.49847 * 243.62708 * 3 2 1 6 6 C 1.53000 * 117.49612 * 175.00097 * 3 2 1 7 7 H 1.08991 * 117.51935 * 0.02562 * 6 3 2 8 8 C 1.53005 * 117.49458 * 214.97987 * 6 3 2 9 9 N 1.46503 * 109.46702 * 174.98965 * 8 6 3 10 10 C 1.34779 * 119.99916 * 180.02562 * 9 8 6 11 11 O 1.21588 * 119.99510 * 359.97438 * 10 9 8 12 12 C 1.47633 * 119.99917 * 179.97438 * 10 9 8 13 13 C 1.40015 * 119.89410 * 179.97438 * 12 10 9 14 14 C 1.36316 * 120.10741 * 180.02562 * 13 12 10 15 15 C 1.40889 * 119.89072 * 359.97438 * 14 13 12 16 16 C 1.41109 * 120.10076 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00168 * 335.43760 * 16 15 14 18 18 C 1.40236 * 119.99876 * 155.15997 * 16 15 14 19 19 N 1.30646 * 119.99969 * 342.68862 * 18 16 15 20 20 Si 1.86797 * 119.99831 * 162.68180 * 18 16 15 21 21 H 1.48496 * 109.47170 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47119 * 120.00380 * 20 18 16 23 23 H 1.48501 * 109.47110 * 239.99918 * 20 18 16 24 24 C 1.40884 * 119.79610 * 0.24890 * 15 14 13 25 25 C 1.36319 * 119.88941 * 359.51789 * 24 15 14 26 26 H 1.09004 * 109.47020 * 299.99684 * 1 2 3 27 27 H 1.08991 * 109.47497 * 59.99983 * 1 2 3 28 28 H 1.09004 * 109.47179 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47020 * 240.00315 * 2 1 3 30 30 H 1.09000 * 109.47394 * 120.00018 * 2 1 3 31 31 H 1.08996 * 117.49939 * 145.02271 * 5 3 2 32 32 H 1.09004 * 117.51785 * 359.97438 * 5 3 2 33 33 H 1.08998 * 109.47015 * 54.99076 * 8 6 3 34 34 H 1.09003 * 109.46851 * 294.98923 * 8 6 3 35 35 H 0.97002 * 120.00225 * 359.97438 * 9 8 6 36 36 H 1.07997 * 119.94819 * 359.97438 * 13 12 10 37 37 H 1.08000 * 120.05309 * 179.97438 * 14 13 12 38 38 H 0.96996 * 119.99623 * 180.02562 * 19 18 16 39 39 H 1.08002 * 120.05730 * 179.74754 * 24 15 14 40 40 H 1.08004 * 119.94685 * 180.20645 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1717 0.4815 5 6 2.8438 1.9077 -1.2159 6 6 3.5501 1.6580 0.1183 7 1 4.1806 0.7723 0.1956 8 6 4.0300 2.8805 0.9033 9 7 5.4910 2.8512 1.0075 10 6 6.1398 3.8349 1.6617 11 8 5.5125 4.7468 2.1649 12 6 7.6120 3.8050 1.7672 13 6 8.2838 4.8284 2.4468 14 6 9.6431 4.8054 2.5465 15 6 10.3721 3.7494 1.9646 16 6 11.7793 3.7215 2.0646 17 1 12.3285 4.6397 2.2125 18 6 12.4644 2.5010 1.9776 19 7 11.8198 1.3768 2.1438 20 14 14.2985 2.4825 1.6241 21 1 14.7885 3.8767 1.4782 22 1 15.0123 1.8223 2.7464 23 1 14.5528 1.7338 0.3671 24 6 9.6920 2.7245 1.2777 25 6 8.3321 2.7535 1.1874 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.7211 2.9428 -1.5343 32 1 3.0099 1.1861 -2.0158 33 1 3.5940 2.8649 1.9021 34 1 3.7207 3.7887 0.3859 35 1 5.9914 2.1234 0.6063 36 1 7.7242 5.6376 2.8922 37 1 10.1605 5.5954 3.0705 38 1 12.2937 0.5327 2.0840 39 1 10.2469 1.9151 0.8265 40 1 7.8096 1.9665 0.6639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452765374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:30 Heat of formation + Delta-G solvation = -33.074328 kcal Electronic energy + Delta-G solvation = -19603.572830 eV Core-core repulsion = 16574.976330 eV Total energy + Delta-G solvation = -3028.596501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -40.83410 -39.31533 -38.68776 -35.67220 -35.46327 -32.98603 -31.97016 -31.30161 -28.63112 -26.93432 -24.64458 -23.63333 -22.82298 -21.93475 -21.58474 -20.87433 -19.37018 -18.44798 -17.33225 -16.95948 -16.25442 -15.92510 -15.74702 -15.49882 -15.23127 -14.97380 -14.71568 -14.41848 -14.28818 -13.87757 -13.65465 -13.26094 -13.14795 -12.93047 -12.85373 -12.63364 -12.39857 -12.37951 -12.13725 -11.86949 -11.76287 -11.37698 -11.13802 -10.97797 -10.95223 -10.56306 -10.02593 -9.57768 -9.40371 -8.79482 -6.48570 0.43310 1.14586 1.38906 1.42326 1.55777 2.11601 2.18015 2.31957 2.77454 2.86308 3.59777 3.68779 3.88795 3.96383 4.20715 4.27293 4.31315 4.32703 4.44027 4.49187 4.55167 4.73120 4.79444 4.86097 4.92039 4.97936 5.03242 5.15458 5.16569 5.20551 5.24537 5.29742 5.31465 5.51186 5.56726 5.60692 5.81912 5.94256 5.99315 6.22328 6.53769 6.70801 6.76940 6.88649 7.42903 8.15987 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028502 B = 0.003118 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.138103 B = 8977.183830 C = 9718.572304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.134 4.134 4 H 0.105 0.895 5 C -0.165 4.165 6 C -0.172 4.172 7 H 0.117 0.883 8 C 0.156 3.844 9 N -0.722 5.722 10 C 0.569 3.431 11 O -0.609 6.609 12 C -0.294 4.294 13 C -0.034 4.034 14 C -0.253 4.253 15 C 0.101 3.899 16 C -0.472 4.472 17 H 0.085 0.915 18 C 0.037 3.963 19 N -0.798 5.798 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.264 1.264 23 H -0.259 1.259 24 C -0.198 4.198 25 C -0.053 4.053 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.408 0.592 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.297 0.703 39 H 0.115 0.885 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.879 -6.758 -6.838 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.153 4.153 4 H 0.123 0.877 5 C -0.202 4.202 6 C -0.190 4.190 7 H 0.135 0.865 8 C 0.032 3.968 9 N -0.374 5.374 10 C 0.363 3.637 11 O -0.494 6.494 12 C -0.299 4.299 13 C -0.053 4.053 14 C -0.273 4.273 15 C 0.098 3.902 16 C -0.499 4.499 17 H 0.103 0.897 18 C -0.182 4.182 19 N -0.421 5.421 20 Si 0.808 3.192 21 H -0.181 1.181 22 H -0.189 1.189 23 H -0.184 1.184 24 C -0.217 4.217 25 C -0.072 4.072 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.245 0.755 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.337 -6.409 -6.482 15.339 hybrid contribution 1.013 -0.126 0.052 1.022 sum -11.324 -6.535 -6.430 14.570 Atomic orbital electron populations 1.21737 0.94738 1.02113 1.01987 1.21151 0.96581 0.93066 1.02338 1.22552 0.91717 0.99103 1.01920 0.87685 1.23318 1.02793 1.02873 0.91245 1.22471 0.96676 0.98793 1.01063 0.86501 1.20812 0.79428 0.97153 0.99397 1.45760 1.07637 1.26757 1.57237 1.18442 0.87805 0.80909 0.76564 1.90608 1.69829 1.37781 1.51152 1.19179 0.91223 1.02479 1.16969 1.20517 0.93996 0.95981 0.94796 1.20864 0.93497 1.03405 1.09505 1.18155 0.94107 0.90927 0.87060 1.20137 0.92162 0.95058 1.42565 0.89697 1.26939 1.06321 0.93991 0.90932 1.69764 1.41160 1.00008 1.31211 0.85054 0.75009 0.79949 0.79177 1.18095 1.18851 1.18379 1.21021 0.93666 1.02083 1.04930 1.20727 0.94147 0.95622 0.96671 0.92801 0.92407 0.91929 0.91157 0.91692 0.88830 0.87314 0.92666 0.92616 0.75455 0.87989 0.87759 0.89163 0.86723 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.87 71.98 0.71 -1.09 16 2 C -0.09 -1.31 6.22 30.60 0.19 -1.12 16 3 C -0.13 -2.25 5.46 -10.79 -0.06 -2.31 16 4 H 0.11 1.80 8.07 -2.39 -0.02 1.78 16 5 C -0.17 -2.81 9.82 30.60 0.30 -2.51 16 6 C -0.17 -3.46 5.57 -10.79 -0.06 -3.52 16 7 H 0.12 2.21 8.04 -2.39 -0.02 2.19 16 8 C 0.16 4.33 5.96 86.38 0.51 4.84 16 9 N -0.72 -23.86 5.50 -466.15 -2.57 -26.42 16 10 C 0.57 24.60 7.76 86.72 0.67 25.27 16 11 O -0.61 -29.88 16.32 -3.99 -0.07 -29.95 16 12 C -0.29 -13.65 5.89 -19.93 -0.12 -13.76 16 13 C -0.03 -1.65 9.52 22.25 0.21 -1.43 16 14 C -0.25 -12.72 9.73 22.47 0.22 -12.50 16 15 C 0.10 5.27 5.57 -21.28 -0.12 5.15 16 16 C -0.47 -23.89 9.04 23.46 0.21 -23.68 16 17 H 0.08 4.14 7.91 -2.91 -0.02 4.11 16 18 C 0.04 1.72 5.14 85.35 0.44 2.16 16 19 N -0.80 -37.99 10.95 21.87 0.24 -37.75 16 20 Si 0.99 34.68 29.60 68.60 2.03 36.71 16 21 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 22 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 23 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 24 C -0.20 -9.79 8.63 22.47 0.19 -9.60 16 25 C -0.05 -2.33 9.47 22.25 0.21 -2.11 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.07 0.90 7.88 -2.39 -0.02 0.88 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.09 1.64 8.03 -2.39 -0.02 1.62 16 32 H 0.11 1.56 8.03 -2.38 -0.02 1.54 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.63 7.88 -2.39 -0.02 1.61 16 35 H 0.41 11.65 6.40 -92.71 -0.59 11.06 16 36 H 0.10 4.86 7.63 -2.91 -0.02 4.84 16 37 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 38 H 0.30 12.49 8.29 -92.71 -0.77 11.72 16 39 H 0.11 5.73 6.17 -2.91 -0.02 5.71 16 40 H 0.12 4.43 6.37 -2.91 -0.02 4.41 16 Total: -1.00 -60.77 336.82 3.60 -57.17 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: 0.44 Total: 36.48 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 3.52 Total: -36.23 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -2.33 Total: -64.17 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.07 Total: -29.95 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -60.77 3.60 -57.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452765374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.093 kcal (2) G-P(sol) polarization free energy of solvation -60.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds