Wall clock time and date at job start Mon Mar 30 2020 02:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46997 * 2 1 4 4 H 1.09003 * 115.56132 * 29.30648 * 3 2 1 5 5 C 1.53072 * 117.49097 * 243.60203 * 3 2 1 6 6 C 1.52993 * 117.50168 * 175.00105 * 3 2 1 7 7 H 1.09004 * 117.49710 * 359.97383 * 6 3 2 8 8 C 1.53003 * 117.50054 * 214.97971 * 6 3 2 9 9 N 1.46497 * 109.47187 * 175.08511 * 8 6 3 10 10 C 1.34778 * 120.00042 * 179.97438 * 9 8 6 11 11 O 1.21547 * 119.99712 * 359.97438 * 10 9 8 12 12 C 1.47877 * 120.00092 * 179.97438 * 10 9 8 13 13 C 1.39922 * 120.02745 * 359.97438 * 12 10 9 14 14 C 1.38332 * 120.36068 * 180.02562 * 13 12 10 15 15 C 1.37753 * 120.41156 * 359.97438 * 14 13 12 16 16 C 1.40752 * 120.03842 * 0.03035 * 15 14 13 17 17 C 1.41437 * 120.17537 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99888 * 335.60177 * 17 16 15 19 19 C 1.39935 * 120.00320 * 155.33273 * 17 16 15 20 20 N 1.30828 * 119.99607 * 342.69290 * 19 17 16 21 21 Si 1.86800 * 120.00141 * 162.68692 * 19 17 16 22 22 H 1.48495 * 109.46807 * 60.00160 * 21 19 17 23 23 H 1.48501 * 109.47046 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47280 * 300.00147 * 21 19 17 25 25 C 1.39001 * 120.02614 * 180.29345 * 12 10 9 26 26 H 1.09008 * 109.47097 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47398 * 300.00133 * 1 2 3 28 28 H 1.09001 * 109.47426 * 60.00670 * 1 2 3 29 29 H 1.08995 * 109.47230 * 240.00069 * 2 1 3 30 30 H 1.09001 * 109.47426 * 119.99330 * 2 1 3 31 31 H 1.09008 * 117.51337 * 145.03257 * 5 3 2 32 32 H 1.09001 * 117.49512 * 359.97438 * 5 3 2 33 33 H 1.09000 * 109.47130 * 55.08002 * 8 6 3 34 34 H 1.09002 * 109.46732 * 295.08200 * 8 6 3 35 35 H 0.96998 * 119.99843 * 359.97438 * 9 8 6 36 36 H 1.08004 * 119.82059 * 359.97438 * 13 12 10 37 37 H 1.07996 * 119.79354 * 180.02562 * 14 13 12 38 38 H 1.08003 * 119.97948 * 180.02562 * 15 14 13 39 39 H 0.97004 * 119.99652 * 179.97438 * 20 19 17 40 40 H 1.07994 * 120.20124 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1718 0.4813 5 6 2.8447 1.9075 -1.2163 6 6 3.5500 1.6580 0.1182 7 1 4.1802 0.7721 0.1965 8 6 4.0299 2.8805 0.9032 9 7 5.4910 2.8525 1.0054 10 6 6.1399 3.8370 1.6583 11 8 5.5127 4.7483 2.1619 12 6 7.6147 3.8084 1.7620 13 6 8.3372 2.7594 1.1830 14 6 9.7169 2.7255 1.2763 15 6 10.3957 3.7239 1.9396 16 6 9.6860 4.7873 2.5284 17 6 10.3800 5.8137 3.2106 18 1 11.3576 5.6202 3.6269 19 6 9.8024 7.0816 3.3413 20 7 8.8055 7.4289 2.5687 21 14 10.4548 8.2779 4.6191 22 1 11.8863 8.5623 4.3454 23 1 9.6776 9.5418 4.5561 24 1 10.3185 7.6805 5.9717 25 6 8.2840 4.8203 2.4405 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 2.7224 2.9427 -1.5352 32 1 3.0108 1.1854 -2.0157 33 1 3.5953 2.8641 1.9027 34 1 3.7192 3.7888 0.3867 35 1 5.9915 2.1254 0.6032 36 1 7.8147 1.9713 0.6611 37 1 10.2654 1.9116 0.8256 38 1 11.4731 3.6907 2.0078 39 1 8.4048 8.3077 2.6595 40 1 7.7302 5.6295 2.8931 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452773529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:39 Heat of formation + Delta-G solvation = -31.280163 kcal Electronic energy + Delta-G solvation = -19786.858836 eV Core-core repulsion = 16758.340137 eV Total energy + Delta-G solvation = -3028.518700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95658 -39.28701 -38.65158 -35.76181 -35.38678 -32.99626 -31.95964 -31.27864 -28.18171 -27.05881 -24.66509 -24.00659 -22.82127 -21.99480 -21.53883 -20.86170 -19.45855 -18.00699 -17.22067 -16.85058 -16.47579 -16.30317 -15.79018 -15.51032 -15.21530 -14.98018 -14.73571 -14.44313 -14.28629 -14.21286 -13.48121 -13.20604 -12.94329 -12.92692 -12.80638 -12.53856 -12.43016 -12.20262 -12.13726 -11.91523 -11.86928 -11.51489 -11.07370 -11.02076 -10.96815 -10.60792 -10.10630 -9.47135 -9.38880 -8.66713 -6.38781 0.37150 1.00959 1.35770 1.47747 1.50358 2.08538 2.18142 2.19836 2.78215 2.83576 3.58567 3.69540 3.87728 3.91611 4.08486 4.22986 4.30785 4.40454 4.48207 4.54621 4.59840 4.69176 4.75571 4.86530 4.91562 4.98574 5.08432 5.15987 5.19035 5.19774 5.24864 5.30813 5.31857 5.47581 5.51449 5.52659 5.86277 5.92124 6.04959 6.28293 6.50833 6.68396 6.87300 6.94344 7.29632 8.29969 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030676 B = 0.003335 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.560655 B = 8393.988410 C = 9057.299869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.136 4.136 4 H 0.102 0.898 5 C -0.167 4.167 6 C -0.167 4.167 7 H 0.124 0.876 8 C 0.152 3.848 9 N -0.709 5.709 10 C 0.558 3.442 11 O -0.592 6.592 12 C -0.139 4.139 13 C -0.197 4.197 14 C -0.096 4.096 15 C -0.217 4.217 16 C 0.066 3.934 17 C -0.498 4.498 18 H 0.085 0.915 19 C 0.028 3.972 20 N -0.827 5.827 21 Si 0.984 3.016 22 H -0.251 1.251 23 H -0.273 1.273 24 H -0.260 1.260 25 C -0.132 4.132 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.414 0.586 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.286 0.714 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.698 -13.240 -6.310 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.154 4.154 4 H 0.120 0.880 5 C -0.203 4.203 6 C -0.186 4.186 7 H 0.142 0.858 8 C 0.028 3.972 9 N -0.362 5.362 10 C 0.348 3.652 11 O -0.474 6.474 12 C -0.143 4.143 13 C -0.216 4.216 14 C -0.113 4.113 15 C -0.236 4.236 16 C 0.064 3.936 17 C -0.527 4.527 18 H 0.103 0.897 19 C -0.187 4.187 20 N -0.452 5.452 21 Si 0.804 3.196 22 H -0.175 1.175 23 H -0.197 1.197 24 H -0.185 1.185 25 C -0.153 4.153 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.252 0.748 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.330 -12.422 -6.047 17.867 hybrid contribution 0.443 0.838 0.435 1.043 sum -10.887 -11.584 -5.611 16.858 Atomic orbital electron populations 1.21747 0.94933 1.02121 1.01887 1.21140 0.96419 0.92895 1.02509 1.22568 0.91752 0.99193 1.01922 0.88019 1.23337 1.02866 1.02799 0.91343 1.22456 0.96693 0.98628 1.00805 0.85769 1.20873 0.79209 0.97430 0.99644 1.45729 1.07732 1.26321 1.56449 1.18788 0.88186 0.81194 0.77064 1.90667 1.69697 1.37352 1.49694 1.19780 0.91352 0.98685 1.04448 1.20863 0.94405 0.99146 1.07211 1.20939 0.94049 0.98040 0.98318 1.21424 0.98802 0.98584 1.04836 1.17961 0.91649 0.93177 0.90845 1.19849 1.04512 0.95334 1.33008 0.89691 1.26883 0.94137 1.00970 0.96692 1.69894 1.20980 1.21511 1.32838 0.85226 0.79526 0.76413 0.78433 1.17511 1.19716 1.18483 1.21453 0.94665 0.97796 1.01362 0.91832 0.92953 0.92526 0.90926 0.91479 0.89198 0.86980 0.92492 0.92932 0.74786 0.84478 0.84198 0.87249 0.90327 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.87 71.98 0.71 -1.04 16 2 C -0.09 -1.19 6.22 30.59 0.19 -1.00 16 3 C -0.14 -2.20 5.46 -10.77 -0.06 -2.26 16 4 H 0.10 1.76 8.08 -2.39 -0.02 1.74 16 5 C -0.17 -2.74 9.83 30.62 0.30 -2.44 16 6 C -0.17 -3.18 5.56 -10.80 -0.06 -3.24 16 7 H 0.12 2.03 8.04 -2.38 -0.02 2.01 16 8 C 0.15 4.23 5.96 86.38 0.51 4.74 16 9 N -0.71 -23.01 5.51 -465.94 -2.57 -25.58 16 10 C 0.56 25.23 7.77 86.80 0.67 25.90 16 11 O -0.59 -31.82 16.33 -3.86 -0.06 -31.88 16 12 C -0.14 -6.71 5.87 -20.13 -0.12 -6.83 16 13 C -0.20 -7.75 9.55 22.70 0.22 -7.53 16 14 C -0.10 -3.78 10.01 22.18 0.22 -3.56 16 15 C -0.22 -10.18 9.78 22.77 0.22 -9.96 16 16 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 17 C -0.50 -27.42 9.05 23.47 0.21 -27.20 16 18 H 0.09 4.39 7.91 -2.91 -0.02 4.36 16 19 C 0.03 1.48 5.15 85.25 0.44 1.92 16 20 N -0.83 -46.94 10.96 21.82 0.24 -46.70 16 21 Si 0.98 40.13 29.59 68.60 2.03 42.16 16 22 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 C -0.13 -7.48 8.23 23.01 0.19 -7.29 16 26 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.82 7.88 -2.39 -0.02 0.80 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 1.61 8.03 -2.38 -0.02 1.59 16 32 H 0.11 1.48 8.03 -2.39 -0.02 1.46 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 1.60 7.88 -2.39 -0.02 1.58 16 35 H 0.41 10.72 6.42 -92.71 -0.60 10.13 16 36 H 0.14 4.04 6.38 -2.91 -0.02 4.02 16 37 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 39 H 0.29 15.02 8.30 -92.71 -0.77 14.25 16 40 H 0.10 6.17 5.75 -2.91 -0.02 6.15 16 Total: -1.00 -69.05 337.09 3.62 -65.43 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.44 Total: 32.85 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 3.54 Total: -36.28 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -2.33 Total: -72.28 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.06 Total: -31.88 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -69.05 3.62 -65.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452773529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.153 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds