Wall clock time and date at job start Mon Mar 30 2020 01:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00253 * 2 1 4 4 C 1.53001 * 109.46719 * 0.02562 * 3 2 1 5 5 C 1.52994 * 109.47579 * 239.99886 * 3 2 1 6 6 C 1.53001 * 109.47257 * 119.99731 * 3 2 1 7 7 N 1.46494 * 109.47509 * 180.02562 * 6 3 2 8 8 C 1.34774 * 120.00587 * 180.02562 * 7 6 3 9 9 O 1.21553 * 119.99465 * 359.97438 * 8 7 6 10 10 C 1.47881 * 120.00588 * 180.02562 * 8 7 6 11 11 C 1.39925 * 120.02098 * 359.71273 * 10 8 7 12 12 C 1.38334 * 120.35798 * 179.74275 * 11 10 8 13 13 C 1.37750 * 120.40757 * 0.56805 * 12 11 10 14 14 C 1.40745 * 120.04390 * 359.69384 * 13 12 11 15 15 C 1.41444 * 120.18397 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99497 * 24.43875 * 15 14 13 17 17 C 1.39929 * 120.00538 * 204.43881 * 15 14 13 18 18 N 1.30831 * 119.99625 * 17.88307 * 17 15 14 19 19 Si 1.86797 * 120.00296 * 197.87831 * 17 15 14 20 20 H 1.48499 * 109.47014 * 59.99952 * 19 17 15 21 21 H 1.48498 * 109.47363 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47200 * 300.00114 * 19 17 15 23 23 C 1.38993 * 120.02836 * 180.02562 * 10 8 7 24 24 H 1.08002 * 119.99760 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.99824 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.99854 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46728 * 179.97438 * 4 3 2 28 28 H 1.08995 * 109.47008 * 299.99561 * 4 3 2 29 29 H 1.09002 * 109.47476 * 59.99821 * 4 3 2 30 30 H 1.08996 * 109.46978 * 300.00316 * 5 3 2 31 31 H 1.09007 * 109.46682 * 59.99794 * 5 3 2 32 32 H 1.08994 * 109.47174 * 179.97438 * 5 3 2 33 33 H 1.09006 * 109.47551 * 300.00819 * 6 3 2 34 34 H 1.08999 * 109.47243 * 59.99932 * 6 3 2 35 35 H 0.97006 * 119.99665 * 359.97438 * 7 6 3 36 36 H 1.08001 * 119.82144 * 0.02562 * 11 10 8 37 37 H 1.07994 * 119.79360 * 180.28649 * 12 11 10 38 38 H 1.08006 * 119.97964 * 179.72084 * 13 12 11 39 39 H 0.97004 * 119.99702 * 180.02562 * 18 17 15 40 40 H 1.07993 * 120.20160 * 359.95022 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9432 1.3862 -1.2491 6 6 2.9432 1.3861 1.2493 7 7 3.6753 2.6550 1.2496 8 6 4.5179 2.9467 2.2602 9 8 4.6700 2.1570 3.1717 10 6 5.2565 4.2279 2.2609 11 6 5.0854 5.1351 1.2094 12 6 5.7688 6.3379 1.2056 13 6 6.6341 6.6513 2.2305 14 6 6.8232 5.7490 3.2939 15 6 7.7107 6.0681 4.3481 16 1 7.9376 7.1006 4.5690 17 6 8.2946 5.0461 5.1048 18 7 8.3139 3.8213 4.6453 19 14 9.0466 5.4305 6.7709 20 1 8.0034 5.9896 7.6678 21 1 9.5957 4.1854 7.3654 22 1 10.1392 6.4223 6.6039 23 6 6.1260 4.5289 3.3026 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.6143 3.4119 0.0011 28 1 0.4424 2.4105 -0.8891 29 1 0.4429 2.4101 0.8908 30 1 3.6515 0.5577 -1.2491 31 1 2.3165 1.3284 -2.1392 32 1 3.4879 2.3303 -1.2493 33 1 2.3165 1.3283 2.1393 34 1 3.6515 0.5576 1.2494 35 1 3.5541 3.2851 0.5220 36 1 4.4128 4.8970 0.3987 37 1 5.6264 7.0334 0.3918 38 1 7.1676 7.5904 2.2183 39 1 8.7183 3.1127 5.1700 40 1 6.2643 3.8298 4.1140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452774264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:53 Heat of formation + Delta-G solvation = -12.058812 kcal Electronic energy + Delta-G solvation = -20447.435296 eV Core-core repulsion = 17419.750097 eV Total energy + Delta-G solvation = -3027.685199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.53868 -37.99843 -36.82173 -33.87482 -33.50090 -30.88877 -29.96002 -29.41877 -27.47672 -26.54740 -25.21452 -22.88969 -21.38720 -20.88042 -19.59798 -18.37575 -17.70939 -16.33058 -15.78867 -15.24451 -15.07156 -14.94564 -14.64493 -14.07173 -13.96477 -13.43685 -13.20863 -13.06858 -12.63690 -12.48848 -12.31785 -11.93772 -11.84892 -11.62981 -11.20870 -11.14343 -11.07821 -10.94851 -10.75479 -10.73538 -10.49401 -10.01769 -9.69394 -9.55390 -9.20097 -8.98238 -8.60253 -7.61896 -7.51411 -6.79417 -4.40860 2.11617 2.23171 2.82987 3.08063 3.09767 3.17400 3.76769 3.89235 3.93164 4.60447 4.62576 4.65705 4.80188 5.10663 5.18680 5.46406 5.57509 5.60096 5.61170 5.67209 5.78712 5.87261 5.88925 5.99680 6.07553 6.14169 6.20117 6.27713 6.45302 6.62784 6.72810 6.90345 6.99670 7.03198 7.22115 7.39032 7.70963 7.77133 7.93631 8.11649 8.20560 8.51294 8.80838 8.84322 8.98971 10.15201 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028927 B = 0.004017 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.714881 B = 6968.178455 C = 7631.185222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C -0.051 4.051 4 C -0.146 4.146 5 C -0.139 4.139 6 C 0.136 3.864 7 N -0.735 5.735 8 C 0.563 3.437 9 O -0.547 6.547 10 C -0.127 4.127 11 C -0.219 4.219 12 C -0.097 4.097 13 C -0.213 4.213 14 C 0.099 3.901 15 C -0.461 4.461 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.783 5.783 19 Si 0.911 3.089 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.093 4.093 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.285 0.715 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 -4.308 -8.673 14.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.157 4.157 3 C -0.051 4.051 4 C -0.203 4.203 5 C -0.196 4.196 6 C 0.012 3.988 7 N -0.390 5.390 8 C 0.353 3.647 9 O -0.425 6.425 10 C -0.131 4.131 11 C -0.239 4.239 12 C -0.116 4.116 13 C -0.233 4.233 14 C 0.097 3.903 15 C -0.489 4.489 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.407 5.407 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.190 1.190 23 C -0.113 4.113 24 H 0.114 0.886 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.235 0.765 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.543 -5.139 -7.957 14.173 hybrid contribution 0.326 0.294 0.270 0.516 sum -10.217 -4.844 -7.687 13.673 Atomic orbital electron populations 1.23995 0.96072 1.02091 1.01185 1.22802 0.95831 0.97359 0.99665 1.19920 0.95494 0.93996 0.95704 1.21979 0.98829 0.97521 1.01979 1.21831 0.99140 1.02551 0.96109 1.21186 0.94162 0.86994 0.96482 1.45997 1.45991 1.20629 1.26339 1.18845 0.78040 0.87041 0.80770 1.90695 1.65071 1.50584 1.36177 1.19482 1.01414 0.93463 0.98702 1.20321 1.07099 0.96738 0.99758 1.20426 0.97536 0.95847 0.97744 1.21090 1.04530 1.01538 0.96130 1.17597 0.90586 0.90910 0.91243 1.19562 1.22718 0.94277 1.12380 0.90111 1.25966 0.94864 0.94459 0.99307 1.69788 1.32747 1.01631 1.36513 0.86320 0.79752 0.78801 0.81617 1.18715 1.20218 1.18981 1.21641 0.93725 0.98395 0.97510 0.88624 0.87833 0.87198 0.92081 0.92171 0.92040 0.92159 0.92381 0.92033 0.91801 0.91742 0.76535 0.89398 0.88937 0.88642 0.90375 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 13.70 29.01 0.40 -1.31 16 2 C -0.14 -1.34 8.76 -36.03 -0.32 -1.66 16 3 C -0.05 -0.54 0.75 -155.66 -0.12 -0.66 16 4 C -0.15 -1.44 6.95 37.16 0.26 -1.18 16 5 C -0.14 -1.40 8.28 37.15 0.31 -1.09 16 6 C 0.14 1.95 4.54 -4.04 -0.02 1.93 16 7 N -0.73 -12.27 4.91 -61.24 -0.30 -12.57 16 8 C 0.56 12.48 7.77 -12.31 -0.10 12.39 16 9 O -0.55 -13.98 16.33 5.32 0.09 -13.90 16 10 C -0.13 -3.03 5.87 -105.04 -0.62 -3.65 16 11 C -0.22 -4.61 9.55 -38.91 -0.37 -4.99 16 12 C -0.10 -2.08 10.01 -39.72 -0.40 -2.47 16 13 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 14 C 0.10 2.64 5.57 -106.87 -0.60 2.04 16 15 C -0.46 -12.15 9.05 -37.73 -0.34 -12.49 16 16 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 17 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 18 N -0.78 -20.86 10.95 55.55 0.61 -20.25 16 19 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 20 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 C -0.09 -2.49 8.24 -38.44 -0.32 -2.81 16 24 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 25 H 0.10 0.85 5.69 -52.49 -0.30 0.55 16 26 H 0.11 1.00 8.06 -52.48 -0.42 0.58 16 27 H 0.06 0.63 6.86 -51.93 -0.36 0.27 16 28 H 0.06 0.51 7.50 -51.93 -0.39 0.12 16 29 H 0.06 0.62 7.50 -51.93 -0.39 0.23 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.64 6.86 -51.93 -0.36 0.29 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.40 5.80 4.18 -40.82 -0.17 5.63 16 36 H 0.09 1.53 6.38 -52.49 -0.33 1.19 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 39 H 0.29 7.00 8.30 -40.82 -0.34 6.67 16 40 H 0.13 3.89 5.74 -52.49 -0.30 3.59 16 LS Contribution 328.78 15.07 4.95 4.95 Total: -1.00 -29.52 328.78 -7.90 -37.42 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -5.53 Total: 10.14 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.69 Total: -19.63 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.31 Total: -32.82 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.52 -7.90 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452774264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.360 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds