Wall clock time and date at job start Mon Mar 30 2020 01:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00253 * 2 1 4 4 C 1.53001 * 109.46719 * 0.02562 * 3 2 1 5 5 C 1.52994 * 109.47579 * 239.99886 * 3 2 1 6 6 C 1.53001 * 109.47257 * 119.99731 * 3 2 1 7 7 N 1.46494 * 109.47509 * 180.02562 * 6 3 2 8 8 C 1.34774 * 120.00587 * 180.02562 * 7 6 3 9 9 O 1.21553 * 119.99465 * 359.97438 * 8 7 6 10 10 C 1.47881 * 120.00588 * 180.02562 * 8 7 6 11 11 C 1.39925 * 120.02098 * 359.71273 * 10 8 7 12 12 C 1.38334 * 120.35798 * 179.74275 * 11 10 8 13 13 C 1.37750 * 120.40757 * 0.56805 * 12 11 10 14 14 C 1.40745 * 120.04390 * 359.69384 * 13 12 11 15 15 C 1.41444 * 120.18397 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99497 * 24.43875 * 15 14 13 17 17 C 1.39929 * 120.00538 * 204.43881 * 15 14 13 18 18 N 1.30831 * 119.99625 * 17.88307 * 17 15 14 19 19 Si 1.86797 * 120.00296 * 197.87831 * 17 15 14 20 20 H 1.48499 * 109.47014 * 59.99952 * 19 17 15 21 21 H 1.48498 * 109.47363 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47200 * 300.00114 * 19 17 15 23 23 C 1.38993 * 120.02836 * 180.02562 * 10 8 7 24 24 H 1.08002 * 119.99760 * 179.97438 * 1 2 3 25 25 H 1.07996 * 119.99824 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.99854 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46728 * 179.97438 * 4 3 2 28 28 H 1.08995 * 109.47008 * 299.99561 * 4 3 2 29 29 H 1.09002 * 109.47476 * 59.99821 * 4 3 2 30 30 H 1.08996 * 109.46978 * 300.00316 * 5 3 2 31 31 H 1.09007 * 109.46682 * 59.99794 * 5 3 2 32 32 H 1.08994 * 109.47174 * 179.97438 * 5 3 2 33 33 H 1.09006 * 109.47551 * 300.00819 * 6 3 2 34 34 H 1.08999 * 109.47243 * 59.99932 * 6 3 2 35 35 H 0.97006 * 119.99665 * 359.97438 * 7 6 3 36 36 H 1.08001 * 119.82144 * 0.02562 * 11 10 8 37 37 H 1.07994 * 119.79360 * 180.28649 * 12 11 10 38 38 H 1.08006 * 119.97964 * 179.72084 * 13 12 11 39 39 H 0.97004 * 119.99702 * 180.02562 * 18 17 15 40 40 H 1.07993 * 120.20160 * 359.95022 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9432 1.3862 -1.2491 6 6 2.9432 1.3861 1.2493 7 7 3.6753 2.6550 1.2496 8 6 4.5179 2.9467 2.2602 9 8 4.6700 2.1570 3.1717 10 6 5.2565 4.2279 2.2609 11 6 5.0854 5.1351 1.2094 12 6 5.7688 6.3379 1.2056 13 6 6.6341 6.6513 2.2305 14 6 6.8232 5.7490 3.2939 15 6 7.7107 6.0681 4.3481 16 1 7.9376 7.1006 4.5690 17 6 8.2946 5.0461 5.1048 18 7 8.3139 3.8213 4.6453 19 14 9.0466 5.4305 6.7709 20 1 8.0034 5.9896 7.6678 21 1 9.5957 4.1854 7.3654 22 1 10.1392 6.4223 6.6039 23 6 6.1260 4.5289 3.3026 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.6143 3.4119 0.0011 28 1 0.4424 2.4105 -0.8891 29 1 0.4429 2.4101 0.8908 30 1 3.6515 0.5577 -1.2491 31 1 2.3165 1.3284 -2.1392 32 1 3.4879 2.3303 -1.2493 33 1 2.3165 1.3283 2.1393 34 1 3.6515 0.5576 1.2494 35 1 3.5541 3.2851 0.5220 36 1 4.4128 4.8970 0.3987 37 1 5.6264 7.0334 0.3918 38 1 7.1676 7.5904 2.2183 39 1 8.7183 3.1127 5.1700 40 1 6.2643 3.8298 4.1140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452774264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:52 Heat of formation + Delta-G solvation = -28.590158 kcal Electronic energy + Delta-G solvation = -20448.152149 eV Core-core repulsion = 17419.750097 eV Total energy + Delta-G solvation = -3028.402052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08420 -39.30545 -38.50507 -35.66364 -34.99112 -32.25509 -31.36070 -31.20318 -28.25381 -27.86244 -27.01860 -24.37008 -22.84861 -22.41485 -21.25326 -19.71870 -18.99797 -17.99484 -17.24603 -16.74953 -16.48201 -16.37010 -16.13647 -15.50966 -15.19856 -14.96983 -14.68995 -14.31383 -14.24469 -14.18128 -13.47891 -13.10861 -12.98706 -12.87644 -12.79310 -12.59907 -12.52655 -12.21386 -12.06607 -11.90662 -11.83702 -11.53658 -11.51251 -11.06600 -10.81621 -10.26632 -10.14282 -9.47177 -9.38510 -8.66724 -6.38408 0.38004 1.01333 1.36122 1.38184 1.47880 1.50759 2.10005 2.19317 2.30938 2.78708 3.69603 3.71927 3.79553 3.89637 4.06042 4.26942 4.41618 4.44711 4.58895 4.64498 4.68082 4.80213 4.86708 4.93012 4.95866 5.02846 5.08510 5.13090 5.19374 5.30823 5.33147 5.38324 5.45796 5.52264 5.75981 5.86197 5.90371 5.92723 6.05321 6.28613 6.50723 6.68308 6.87611 6.94701 7.30729 8.29807 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028927 B = 0.004017 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.714881 B = 6968.178455 C = 7631.185222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.157 4.157 3 C -0.040 4.040 4 C -0.147 4.147 5 C -0.139 4.139 6 C 0.133 3.867 7 N -0.708 5.708 8 C 0.558 3.442 9 O -0.592 6.592 10 C -0.139 4.139 11 C -0.198 4.198 12 C -0.094 4.094 13 C -0.218 4.218 14 C 0.068 3.932 15 C -0.499 4.499 16 H 0.085 0.915 17 C 0.029 3.971 18 N -0.825 5.825 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.252 1.252 23 C -0.132 4.132 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.411 0.589 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.286 0.714 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.421 -3.450 -10.883 16.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.176 4.176 3 C -0.041 4.041 4 C -0.204 4.204 5 C -0.197 4.197 6 C 0.010 3.990 7 N -0.362 5.362 8 C 0.348 3.652 9 O -0.474 6.474 10 C -0.142 4.142 11 C -0.218 4.218 12 C -0.112 4.112 13 C -0.237 4.237 14 C 0.066 3.934 15 C -0.528 4.528 16 H 0.103 0.897 17 C -0.186 4.186 18 N -0.450 5.450 19 Si 0.804 3.196 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.176 1.176 23 C -0.153 4.153 24 H 0.127 0.873 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.251 0.749 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.246 -4.263 -10.230 16.516 hybrid contribution 0.673 0.022 0.762 1.017 sum -11.573 -4.241 -9.468 15.542 Atomic orbital electron populations 1.24196 0.95694 1.03139 0.98985 1.22784 0.96295 0.96885 1.01615 1.19838 0.95170 0.95256 0.93815 1.22003 0.98749 0.96731 1.02880 1.21851 0.99228 1.02156 0.96436 1.21368 0.94056 0.85178 0.98414 1.45777 1.44039 1.21549 1.24804 1.18779 0.78701 0.86328 0.81412 1.90669 1.66744 1.51714 1.38227 1.19784 1.00896 0.94786 0.98737 1.20830 1.06157 0.95540 0.99267 1.20924 0.95844 0.96505 0.97932 1.21413 1.04904 1.01435 0.95992 1.17943 0.91216 0.91659 0.92630 1.19856 1.24085 0.94802 1.14035 0.89716 1.26867 0.94974 0.93947 1.02789 1.69894 1.34354 1.02713 1.38083 0.85234 0.79044 0.78847 0.76516 1.18505 1.19693 1.17559 1.21446 0.96561 0.98836 0.98422 0.87265 0.87129 0.87031 0.92308 0.90082 0.92376 0.92694 0.90477 0.92315 0.92878 0.92880 0.74926 0.84741 0.84235 0.87290 0.90319 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 13.70 67.78 0.93 -1.73 16 2 C -0.16 -2.72 8.76 25.65 0.22 -2.50 16 3 C -0.04 -0.78 0.75 -52.93 -0.04 -0.82 16 4 C -0.15 -2.45 6.95 71.98 0.50 -1.95 16 5 C -0.14 -2.43 8.28 71.98 0.60 -1.84 16 6 C 0.13 3.74 4.54 86.38 0.39 4.13 16 7 N -0.71 -22.83 4.91 -465.94 -2.29 -25.12 16 8 C 0.56 25.11 7.77 86.80 0.67 25.79 16 9 O -0.59 -31.70 16.33 -3.88 -0.06 -31.77 16 10 C -0.14 -6.66 5.87 -20.13 -0.12 -6.78 16 11 C -0.20 -7.79 9.55 22.70 0.22 -7.57 16 12 C -0.09 -3.71 10.01 22.18 0.22 -3.49 16 13 C -0.22 -10.19 9.78 22.77 0.22 -9.97 16 14 C 0.07 3.72 5.57 -21.32 -0.12 3.60 16 15 C -0.50 -27.39 9.05 23.47 0.21 -27.18 16 16 H 0.08 4.37 7.91 -2.91 -0.02 4.34 16 17 C 0.03 1.55 5.14 85.25 0.44 1.98 16 18 N -0.82 -46.64 10.95 21.82 0.24 -46.40 16 19 Si 0.98 40.01 29.60 68.60 2.03 42.04 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 21 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 22 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 23 C -0.13 -7.44 8.24 23.01 0.19 -7.26 16 24 H 0.11 1.30 8.06 -2.91 -0.02 1.28 16 25 H 0.11 1.45 5.69 -2.91 -0.02 1.43 16 26 H 0.11 1.87 8.06 -2.91 -0.02 1.85 16 27 H 0.06 1.00 6.86 -2.39 -0.02 0.99 16 28 H 0.08 1.04 7.50 -2.39 -0.02 1.02 16 29 H 0.06 1.02 7.50 -2.39 -0.02 1.00 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.07 8.14 -2.38 -0.02 1.06 16 32 H 0.06 1.04 6.86 -2.39 -0.02 1.02 16 33 H 0.05 1.62 8.14 -2.38 -0.02 1.61 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.41 10.81 4.18 -92.70 -0.39 10.43 16 36 H 0.13 3.98 6.38 -2.91 -0.02 3.96 16 37 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 40 H 0.10 6.15 5.74 -2.91 -0.02 6.14 16 Total: -1.00 -68.70 328.78 5.11 -63.59 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.65 Total: 33.23 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 4.54 Total: -35.57 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -2.05 Total: -71.53 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.06 Total: -31.77 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -68.70 5.11 -63.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452774264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.996 kcal (2) G-P(sol) polarization free energy of solvation -68.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds