Wall clock time and date at job start Mon Mar 30 2020 01:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00047 * 2 1 4 4 C 1.52995 * 109.47334 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47280 * 239.99530 * 3 2 1 6 6 C 1.53001 * 109.46874 * 119.99744 * 3 2 1 7 7 N 1.46505 * 109.47046 * 179.97438 * 6 3 2 8 8 C 1.34771 * 120.00394 * 179.97438 * 7 6 3 9 9 O 1.21592 * 119.99579 * 0.02562 * 8 7 6 10 10 C 1.47642 * 120.00628 * 180.02562 * 8 7 6 11 11 C 1.40014 * 119.89046 * 0.25312 * 10 8 7 12 12 C 1.36315 * 120.10857 * 180.25454 * 11 10 8 13 13 C 1.40893 * 119.88481 * 359.47208 * 12 11 10 14 14 C 1.41114 * 120.09748 * 180.29801 * 13 12 11 15 15 H 1.08000 * 120.00330 * 335.06249 * 14 13 12 16 16 C 1.40223 * 119.99644 * 155.06801 * 14 13 12 17 17 N 1.30656 * 120.00207 * 342.19907 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 162.20506 * 16 14 13 19 19 H 1.48503 * 109.47047 * 94.65856 * 18 16 14 20 20 H 1.48504 * 109.47089 * 214.65560 * 18 16 14 21 21 H 1.48498 * 109.46765 * 334.65988 * 18 16 14 22 22 C 1.40884 * 119.79739 * 0.28068 * 13 12 11 23 23 C 1.36315 * 119.88972 * 359.97438 * 22 13 12 24 24 H 1.08004 * 120.00250 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00098 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.00250 * 179.97438 * 2 1 3 27 27 H 1.08991 * 109.47632 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46868 * 300.00330 * 4 3 2 29 29 H 1.09004 * 109.47117 * 59.99922 * 4 3 2 30 30 H 1.09000 * 109.47322 * 300.00180 * 5 3 2 31 31 H 1.09006 * 109.46981 * 60.00103 * 5 3 2 32 32 H 1.08997 * 109.47671 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47174 * 60.00160 * 6 3 2 34 34 H 1.08997 * 109.47509 * 300.00124 * 6 3 2 35 35 H 0.97008 * 119.99606 * 0.02562 * 7 6 3 36 36 H 1.08009 * 119.95054 * 0.02770 * 11 10 8 37 37 H 1.07993 * 120.05993 * 179.74600 * 12 11 10 38 38 H 0.96994 * 120.00294 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.05494 * 180.02562 * 22 13 12 40 40 H 1.07998 * 119.94660 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2491 6 6 2.9430 1.3861 1.2493 7 7 3.6760 2.6546 1.2490 8 6 4.5180 2.9466 2.2600 9 8 4.6696 2.1571 3.1722 10 6 5.2563 4.2252 2.2601 11 6 5.0760 5.1351 1.2113 12 6 5.7593 6.3146 1.2042 13 6 6.6397 6.6222 2.2603 14 6 7.3446 7.8447 2.2607 15 1 7.5433 8.3538 1.3292 16 6 7.7871 8.3984 3.4706 17 7 7.2697 7.9964 4.6010 18 14 9.1163 9.7109 3.4664 19 1 8.4849 11.0549 3.4833 20 1 9.9733 9.5515 4.6687 21 1 9.9473 9.5697 2.2438 22 6 6.8139 5.7057 3.3161 23 6 6.1301 4.5265 3.3117 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.6142 3.4120 -0.0002 28 1 0.4430 2.4101 -0.8908 29 1 0.4423 2.4105 0.8891 30 1 3.6515 0.5577 -1.2491 31 1 2.3165 1.3284 -2.1392 32 1 3.4878 2.3303 -1.2494 33 1 3.6513 0.5576 1.2493 34 1 2.3164 1.3284 2.1393 35 1 3.5547 3.2847 0.5215 36 1 4.3972 4.9005 0.4046 37 1 5.6227 7.0140 0.3928 38 1 7.5761 8.3791 5.4379 39 1 7.4874 5.9375 4.1279 40 1 6.2633 3.8231 4.1203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452778237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:57 Heat of formation + Delta-G solvation = -15.833965 kcal Electronic energy + Delta-G solvation = -20213.953938 eV Core-core repulsion = 17186.105036 eV Total energy + Delta-G solvation = -3027.848902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.46347 -37.98723 -36.88827 -33.88989 -33.57540 -30.82125 -30.04242 -29.46298 -27.46319 -26.86493 -25.36178 -22.47035 -21.50411 -20.70093 -19.66408 -18.33230 -17.52490 -17.02531 -15.66795 -15.50234 -15.15841 -14.89724 -14.26650 -14.00517 -13.94802 -13.43153 -13.21433 -13.04718 -12.68083 -12.32113 -12.21510 -11.97810 -11.83832 -11.79563 -11.37416 -11.22740 -11.17778 -10.97322 -10.93801 -10.74359 -10.60749 -10.05741 -9.56321 -9.52401 -9.31878 -8.94604 -8.54885 -7.69045 -7.55269 -7.01090 -4.59109 2.12248 2.25529 2.90933 2.95931 3.01532 3.04019 3.75048 3.86023 3.90317 4.58292 4.62461 4.64974 4.81806 5.11873 5.19085 5.47889 5.57949 5.59070 5.64594 5.68130 5.86243 5.89139 5.93763 5.99242 6.05229 6.15474 6.24488 6.30891 6.45677 6.63560 6.81341 6.84803 6.99202 7.07548 7.11847 7.44789 7.62480 7.79859 7.88881 8.06325 8.27622 8.44187 8.64000 8.76566 9.11133 9.90985 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.043048 B = 0.003366 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.276723 B = 8315.294925 C = 8646.658777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C -0.051 4.051 4 C -0.146 4.146 5 C -0.138 4.138 6 C 0.138 3.862 7 N -0.740 5.740 8 C 0.570 3.430 9 O -0.574 6.574 10 C -0.283 4.283 11 C -0.050 4.050 12 C -0.235 4.235 13 C 0.128 3.872 14 C -0.444 4.444 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.770 5.770 18 Si 0.912 3.088 19 H -0.268 1.268 20 H -0.272 1.272 21 H -0.258 1.258 22 C -0.182 4.182 23 C -0.036 4.036 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.395 0.605 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.287 0.713 39 H 0.120 0.880 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 -7.206 -8.415 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.156 4.156 3 C -0.052 4.052 4 C -0.203 4.203 5 C -0.196 4.196 6 C 0.014 3.986 7 N -0.394 5.394 8 C 0.364 3.636 9 O -0.456 6.456 10 C -0.287 4.287 11 C -0.069 4.069 12 C -0.254 4.254 13 C 0.125 3.875 14 C -0.472 4.472 15 H 0.102 0.898 16 C -0.148 4.148 17 N -0.393 5.393 18 Si 0.736 3.264 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.202 4.202 23 C -0.055 4.055 24 H 0.122 0.878 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.232 0.768 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.859 -7.726 -7.505 13.333 hybrid contribution 0.378 0.861 -0.244 0.972 sum -7.480 -6.864 -7.749 12.772 Atomic orbital electron populations 1.23995 0.96088 1.02087 1.01201 1.22798 0.95824 0.97355 0.99660 1.19925 0.95521 0.93948 0.95768 1.21973 0.98830 0.97539 1.01948 1.21826 0.99125 1.02486 0.96130 1.21132 0.94046 0.87129 0.96295 1.45960 1.46438 1.20539 1.26509 1.18599 0.77771 0.86775 0.80407 1.90639 1.66751 1.51413 1.36795 1.18921 1.11202 0.96554 1.02026 1.20344 0.97159 0.94001 0.95365 1.20659 1.03700 0.98457 1.02623 1.17779 0.87605 0.91828 0.90274 1.19825 1.29038 1.04446 0.93843 0.89772 1.26104 0.95925 0.97822 0.94915 1.69752 1.33816 1.36284 0.99398 0.86223 0.80596 0.80177 0.79428 1.19268 1.19715 1.18112 1.21009 1.03975 0.93357 1.01828 1.20481 0.93830 0.95933 0.95291 0.87825 0.88650 0.87252 0.92079 0.92200 0.92065 0.92231 0.92416 0.92047 0.91988 0.92003 0.76840 0.89442 0.88514 0.90182 0.86192 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 13.70 29.02 0.40 -1.32 16 2 C -0.14 -1.33 8.76 -36.02 -0.32 -1.65 16 3 C -0.05 -0.55 0.75 -155.66 -0.12 -0.67 16 4 C -0.15 -1.47 6.95 37.15 0.26 -1.21 16 5 C -0.14 -1.38 8.28 37.16 0.31 -1.07 16 6 C 0.14 1.97 4.55 -4.04 -0.02 1.95 16 7 N -0.74 -12.24 4.91 -61.31 -0.30 -12.54 16 8 C 0.57 12.29 7.76 -12.42 -0.10 12.19 16 9 O -0.57 -14.09 16.32 5.28 0.09 -14.00 16 10 C -0.28 -6.51 5.89 -104.73 -0.62 -7.13 16 11 C -0.05 -1.06 9.47 -39.61 -0.38 -1.43 16 12 C -0.23 -5.43 9.73 -39.27 -0.38 -5.81 16 13 C 0.13 3.27 5.57 -106.80 -0.60 2.68 16 14 C -0.44 -11.05 9.04 -37.75 -0.34 -11.39 16 15 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 16 C 0.07 1.74 5.13 -17.31 -0.09 1.65 16 17 N -0.77 -18.90 10.97 55.56 0.61 -18.29 16 18 Si 0.91 17.41 29.60 -169.99 -5.03 12.38 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 22 C -0.18 -4.69 8.63 -39.27 -0.34 -5.03 16 23 C -0.04 -0.89 9.52 -39.61 -0.38 -1.27 16 24 H 0.10 0.86 5.69 -52.48 -0.30 0.57 16 25 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 26 H 0.11 0.98 8.06 -52.48 -0.42 0.56 16 27 H 0.06 0.65 6.86 -51.93 -0.36 0.29 16 28 H 0.06 0.52 7.50 -51.93 -0.39 0.13 16 29 H 0.06 0.63 7.50 -51.93 -0.39 0.24 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.64 6.86 -51.93 -0.36 0.28 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.40 5.76 4.16 -40.82 -0.17 5.59 16 36 H 0.09 1.52 6.37 -52.48 -0.33 1.19 16 37 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 38 H 0.29 6.34 8.29 -40.82 -0.34 6.01 16 39 H 0.12 3.15 6.17 -52.48 -0.32 2.83 16 40 H 0.10 2.45 7.63 -52.49 -0.40 2.05 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -28.42 328.56 -7.91 -36.33 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.53 Total: 10.68 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.70 Total: -19.50 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.31 Total: -30.83 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.09 Total: -14.00 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.42 -7.91 -36.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452778237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.494 kcal (2) G-P(sol) polarization free energy of solvation -28.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds