Wall clock time and date at job start Mon Mar 30 2020 01:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00047 * 2 1 4 4 C 1.52995 * 109.47334 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47280 * 239.99530 * 3 2 1 6 6 C 1.53001 * 109.46874 * 119.99744 * 3 2 1 7 7 N 1.46505 * 109.47046 * 179.97438 * 6 3 2 8 8 C 1.34771 * 120.00394 * 179.97438 * 7 6 3 9 9 O 1.21592 * 119.99579 * 0.02562 * 8 7 6 10 10 C 1.47642 * 120.00628 * 180.02562 * 8 7 6 11 11 C 1.40014 * 119.89046 * 0.25312 * 10 8 7 12 12 C 1.36315 * 120.10857 * 180.25454 * 11 10 8 13 13 C 1.40893 * 119.88481 * 359.47208 * 12 11 10 14 14 C 1.41114 * 120.09748 * 180.29801 * 13 12 11 15 15 H 1.08000 * 120.00330 * 335.06249 * 14 13 12 16 16 C 1.40223 * 119.99644 * 155.06801 * 14 13 12 17 17 N 1.30656 * 120.00207 * 342.19907 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 162.20506 * 16 14 13 19 19 H 1.48503 * 109.47047 * 94.65856 * 18 16 14 20 20 H 1.48504 * 109.47089 * 214.65560 * 18 16 14 21 21 H 1.48498 * 109.46765 * 334.65988 * 18 16 14 22 22 C 1.40884 * 119.79739 * 0.28068 * 13 12 11 23 23 C 1.36315 * 119.88972 * 359.97438 * 22 13 12 24 24 H 1.08004 * 120.00250 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00098 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.00250 * 179.97438 * 2 1 3 27 27 H 1.08991 * 109.47632 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46868 * 300.00330 * 4 3 2 29 29 H 1.09004 * 109.47117 * 59.99922 * 4 3 2 30 30 H 1.09000 * 109.47322 * 300.00180 * 5 3 2 31 31 H 1.09006 * 109.46981 * 60.00103 * 5 3 2 32 32 H 1.08997 * 109.47671 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47174 * 60.00160 * 6 3 2 34 34 H 1.08997 * 109.47509 * 300.00124 * 6 3 2 35 35 H 0.97008 * 119.99606 * 0.02562 * 7 6 3 36 36 H 1.08009 * 119.95054 * 0.02770 * 11 10 8 37 37 H 1.07993 * 120.05993 * 179.74600 * 12 11 10 38 38 H 0.96994 * 120.00294 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.05494 * 180.02562 * 22 13 12 40 40 H 1.07998 * 119.94660 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2491 6 6 2.9430 1.3861 1.2493 7 7 3.6760 2.6546 1.2490 8 6 4.5180 2.9466 2.2600 9 8 4.6696 2.1571 3.1722 10 6 5.2563 4.2252 2.2601 11 6 5.0760 5.1351 1.2113 12 6 5.7593 6.3146 1.2042 13 6 6.6397 6.6222 2.2603 14 6 7.3446 7.8447 2.2607 15 1 7.5433 8.3538 1.3292 16 6 7.7871 8.3984 3.4706 17 7 7.2697 7.9964 4.6010 18 14 9.1163 9.7109 3.4664 19 1 8.4849 11.0549 3.4833 20 1 9.9733 9.5515 4.6687 21 1 9.9473 9.5697 2.2438 22 6 6.8139 5.7057 3.3161 23 6 6.1301 4.5265 3.3117 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.6142 3.4120 -0.0002 28 1 0.4430 2.4101 -0.8908 29 1 0.4423 2.4105 0.8891 30 1 3.6515 0.5577 -1.2491 31 1 2.3165 1.3284 -2.1392 32 1 3.4878 2.3303 -1.2494 33 1 3.6513 0.5576 1.2493 34 1 2.3164 1.3284 2.1393 35 1 3.5547 3.2847 0.5215 36 1 4.3972 4.9005 0.4046 37 1 5.6227 7.0140 0.3928 38 1 7.5761 8.3791 5.4379 39 1 7.4874 5.9375 4.1279 40 1 6.2633 3.8231 4.1203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452778237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:56 Heat of formation + Delta-G solvation = -30.679006 kcal Electronic energy + Delta-G solvation = -20214.597667 eV Core-core repulsion = 17186.105036 eV Total energy + Delta-G solvation = -3028.492632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96612 -39.33723 -38.50761 -35.69376 -34.95422 -32.13097 -31.62809 -31.10717 -28.35383 -28.22293 -26.86986 -23.94092 -22.96225 -22.29249 -21.28051 -19.37627 -19.27961 -18.45081 -17.15125 -16.99937 -16.33051 -16.15301 -15.74763 -15.63379 -15.15491 -14.94800 -14.65595 -14.30003 -14.16445 -13.98099 -13.62843 -13.23483 -13.09172 -12.89770 -12.80892 -12.63014 -12.59028 -12.35902 -12.05519 -11.82053 -11.78274 -11.52398 -11.36069 -11.11114 -10.74926 -10.24965 -10.05172 -9.56869 -9.40590 -8.78923 -6.47906 0.44552 1.15303 1.37887 1.39920 1.42571 1.55150 2.11569 2.18288 2.45005 2.79695 3.69320 3.74937 3.81389 3.91938 4.27613 4.28432 4.33223 4.41286 4.46171 4.66606 4.72872 4.81634 4.90158 4.96757 4.97694 5.02311 5.04464 5.13632 5.20827 5.25977 5.34076 5.39178 5.56498 5.59439 5.76931 5.78751 5.91574 5.96615 6.01990 6.20292 6.56172 6.72892 6.76905 6.89789 7.45337 8.16341 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.043048 B = 0.003366 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.276723 B = 8315.294925 C = 8646.658777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.155 4.155 3 C -0.042 4.042 4 C -0.147 4.147 5 C -0.139 4.139 6 C 0.136 3.864 7 N -0.718 5.718 8 C 0.568 3.432 9 O -0.611 6.611 10 C -0.294 4.294 11 C -0.037 4.037 12 C -0.245 4.245 13 C 0.101 3.899 14 C -0.471 4.471 15 H 0.093 0.907 16 C 0.033 3.967 17 N -0.804 5.804 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.268 1.268 21 H -0.253 1.253 22 C -0.203 4.203 23 C -0.051 4.051 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.407 0.593 36 H 0.133 0.867 37 H 0.117 0.883 38 H 0.295 0.705 39 H 0.103 0.897 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 -6.817 -10.505 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.174 4.174 3 C -0.042 4.042 4 C -0.204 4.204 5 C -0.196 4.196 6 C 0.013 3.987 7 N -0.371 5.371 8 C 0.362 3.638 9 O -0.495 6.495 10 C -0.298 4.298 11 C -0.056 4.056 12 C -0.264 4.264 13 C 0.098 3.902 14 C -0.499 4.499 15 H 0.111 0.889 16 C -0.185 4.185 17 N -0.427 5.427 18 Si 0.808 3.192 19 H -0.183 1.183 20 H -0.192 1.192 21 H -0.177 1.177 22 C -0.222 4.222 23 C -0.070 4.070 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.132 0.868 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.246 0.754 36 H 0.150 0.850 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.942 -7.346 -9.638 15.060 hybrid contribution 0.595 0.650 0.398 0.967 sum -8.346 -6.696 -9.241 14.138 Atomic orbital electron populations 1.24187 0.95780 1.03062 0.99211 1.22786 0.96235 0.96914 1.01417 1.19843 0.95193 0.95093 0.94072 1.21997 0.98795 0.96834 1.02750 1.21841 0.99218 1.02166 0.96354 1.21300 0.93986 0.85430 0.98016 1.45757 1.44712 1.21482 1.25141 1.18457 0.78346 0.85981 0.81022 1.90618 1.68138 1.52292 1.38492 1.19181 1.10899 0.97771 1.01954 1.20672 0.96752 0.92608 0.95562 1.20943 1.03311 0.99566 1.02571 1.18145 0.88679 0.92339 0.91050 1.20156 1.30100 1.04715 0.94896 0.88899 1.27030 0.97570 0.99897 0.94045 1.69807 1.35053 1.37607 1.00281 0.85090 0.77359 0.77243 0.79517 1.18264 1.19223 1.17656 1.20932 1.04833 0.94220 1.02234 1.20544 0.94781 0.95651 0.96026 0.87339 0.87236 0.86834 0.92532 0.90248 0.92464 0.92463 0.90699 0.92432 0.92722 0.93175 0.75396 0.84984 0.86455 0.89387 0.87872 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 13.70 67.79 0.93 -1.78 16 2 C -0.16 -2.64 8.76 25.66 0.22 -2.42 16 3 C -0.04 -0.80 0.75 -52.93 -0.04 -0.84 16 4 C -0.15 -2.57 6.95 71.98 0.50 -2.07 16 5 C -0.14 -2.41 8.28 71.98 0.60 -1.81 16 6 C 0.14 3.74 4.55 86.38 0.39 4.13 16 7 N -0.72 -22.79 4.91 -466.15 -2.29 -25.07 16 8 C 0.57 24.45 7.76 86.73 0.67 25.12 16 9 O -0.61 -30.54 16.32 -4.01 -0.07 -30.61 16 10 C -0.29 -13.56 5.89 -19.93 -0.12 -13.68 16 11 C -0.04 -1.53 9.47 22.25 0.21 -1.32 16 12 C -0.24 -11.09 9.73 22.47 0.22 -10.87 16 13 C 0.10 5.24 5.57 -21.28 -0.12 5.12 16 14 C -0.47 -23.66 9.04 23.46 0.21 -23.45 16 15 H 0.09 4.34 7.91 -2.91 -0.02 4.31 16 16 C 0.03 1.57 5.13 85.35 0.44 2.01 16 17 N -0.80 -40.40 10.97 21.87 0.24 -40.16 16 18 Si 0.99 35.34 29.60 68.60 2.03 37.38 16 19 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 20 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 21 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 22 C -0.20 -10.87 8.63 22.47 0.19 -10.68 16 23 C -0.05 -2.60 9.52 22.25 0.21 -2.39 16 24 H 0.11 1.48 5.69 -2.91 -0.02 1.46 16 25 H 0.11 1.30 8.06 -2.91 -0.02 1.27 16 26 H 0.11 1.82 8.06 -2.91 -0.02 1.80 16 27 H 0.06 1.04 6.86 -2.39 -0.02 1.02 16 28 H 0.08 1.10 7.50 -2.39 -0.02 1.08 16 29 H 0.06 1.05 7.50 -2.38 -0.02 1.03 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 1.03 6.86 -2.39 -0.02 1.02 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.41 10.86 4.16 -92.70 -0.39 10.47 16 36 H 0.13 4.13 6.37 -2.91 -0.02 4.11 16 37 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.30 13.29 8.29 -92.71 -0.77 12.53 16 39 H 0.10 5.75 6.17 -2.91 -0.02 5.73 16 40 H 0.09 4.67 7.63 -2.91 -0.02 4.65 16 Total: -1.00 -62.91 328.56 5.09 -57.82 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: 0.65 Total: 35.57 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 4.53 Total: -34.91 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: -2.05 Total: -65.23 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.07 Total: -30.61 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.38 kcal Total: -62.91 5.09 -57.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452778237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.136 kcal (2) G-P(sol) polarization free energy of solvation -62.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds