Wall clock time and date at job start Mon Mar 30 2020 01:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47310 * 2 1 4 4 C 1.53002 * 115.56137 * 34.30416 * 3 2 1 5 5 C 1.53001 * 117.49518 * 248.62551 * 3 2 1 6 6 C 1.52997 * 117.49992 * 180.02562 * 3 2 1 7 7 H 1.08999 * 117.49980 * 359.97438 * 6 3 2 8 8 C 1.50702 * 117.49521 * 215.00189 * 6 3 2 9 9 O 1.21290 * 120.00171 * 0.08002 * 8 6 3 10 10 N 1.34777 * 119.99599 * 180.08583 * 8 6 3 11 11 C 1.39942 * 119.99486 * 174.71618 * 10 8 6 12 12 C 1.39288 * 119.94839 * 321.02161 * 11 10 8 13 13 C 1.38495 * 120.42794 * 179.76300 * 12 11 10 14 14 C 1.37684 * 120.31776 * 0.52126 * 13 12 11 15 15 C 1.40740 * 119.88858 * 359.74160 * 14 13 12 16 16 C 1.41411 * 120.21067 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99824 * 157.88235 * 16 15 14 18 18 C 1.39924 * 119.99574 * 337.88117 * 16 15 14 19 19 N 1.30827 * 120.00678 * 331.87483 * 18 16 15 20 20 Si 1.86808 * 119.99613 * 151.87653 * 18 16 15 21 21 H 1.48498 * 109.46820 * 94.98740 * 20 18 16 22 22 H 1.48501 * 109.47045 * 214.98113 * 20 18 16 23 23 H 1.48495 * 109.47449 * 334.98591 * 20 18 16 24 24 C 1.38245 * 119.94360 * 141.30339 * 11 10 8 25 25 H 1.09003 * 109.47189 * 59.99884 * 1 2 3 26 26 H 1.08998 * 109.47542 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47635 * 300.00584 * 1 2 3 28 28 H 1.08997 * 109.47002 * 239.99754 * 2 1 3 29 29 H 1.08999 * 109.47050 * 119.99365 * 2 1 3 30 30 H 1.08998 * 109.47173 * 205.69474 * 4 3 2 31 31 H 1.09001 * 109.47084 * 325.69448 * 4 3 2 32 32 H 1.08997 * 109.46751 * 85.69240 * 4 3 2 33 33 H 1.08996 * 117.49765 * 145.02067 * 5 3 2 34 34 H 1.09003 * 117.49904 * 359.97438 * 5 3 2 35 35 H 0.96994 * 120.00467 * 354.71277 * 10 8 6 36 36 H 1.07999 * 119.78775 * 0.02670 * 12 11 10 37 37 H 1.07998 * 119.83704 * 180.28366 * 13 12 11 38 38 H 1.08004 * 120.05454 * 179.72163 * 14 13 12 39 39 H 0.96997 * 120.00249 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.16122 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1851 2.4450 0.7779 5 6 2.7418 1.9436 -1.2638 6 6 3.5550 1.6562 -0.0006 7 1 4.1884 0.7691 -0.0006 8 6 4.0913 2.8375 0.7661 9 8 3.3294 3.5753 1.3545 10 7 5.4178 3.0742 0.7979 11 6 5.9075 4.2305 1.4156 12 6 5.2233 5.4358 1.2771 13 6 5.6964 6.5851 1.8881 14 6 6.8551 6.5508 2.6310 15 6 7.5601 5.3412 2.7753 16 6 8.7512 5.2983 3.5363 17 1 9.0960 4.3609 3.9469 18 6 9.4828 6.4704 3.7572 19 7 9.4357 7.4451 2.8858 20 14 10.5270 6.6434 5.2964 21 1 11.9259 6.2487 4.9925 22 1 10.5000 8.0550 5.7568 23 1 9.9853 5.7642 6.3635 24 6 7.0727 4.1758 2.1575 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.3350 3.4444 0.3694 31 1 0.1338 2.1708 0.6906 32 1 1.4775 2.4340 1.8279 33 1 2.5947 2.9874 -1.5410 34 1 2.8406 1.2454 -2.0951 35 1 6.0329 2.4432 0.3927 36 1 4.3157 5.4735 0.6929 37 1 5.1558 7.5136 1.7781 38 1 7.2226 7.4506 3.1019 39 1 9.9432 8.2574 3.0388 40 1 7.6061 3.2426 2.2620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456729974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:56 Heat of formation + Delta-G solvation = -3.485934 kcal Electronic energy + Delta-G solvation = -20296.474692 eV Core-core repulsion = 17269.161241 eV Total energy + Delta-G solvation = -3027.313451 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19562 -38.13134 -36.70987 -34.36574 -33.10253 -32.29353 -29.85330 -28.59210 -27.80644 -25.26031 -24.41091 -23.80601 -21.22119 -20.79875 -19.57169 -18.79177 -17.52677 -16.85055 -15.65205 -15.29976 -14.90736 -14.82053 -14.66782 -14.24443 -13.98647 -13.30664 -12.95169 -12.84169 -12.65126 -12.35562 -12.25819 -12.21537 -11.72332 -11.65996 -11.40949 -11.20812 -11.08572 -10.90783 -10.68724 -10.53205 -10.11827 -10.05855 -9.78716 -9.67871 -9.33596 -9.04317 -8.79970 -7.49900 -6.93572 -6.85942 -4.33579 2.55601 2.81133 3.06741 3.09872 3.14949 3.26818 3.61177 3.85658 3.92908 4.57734 4.61796 4.62293 4.81318 4.94709 5.15952 5.25033 5.31186 5.51348 5.63976 5.70520 5.75612 5.80669 5.91423 5.95630 6.06629 6.15443 6.23810 6.30348 6.54391 6.64097 6.80958 6.92660 7.01670 7.07781 7.21674 7.61163 7.71861 7.97608 8.03055 8.14486 8.32988 8.58312 8.76190 8.88115 8.98210 10.11065 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.043958 B = 0.003391 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.813506 B = 8253.989294 C = 8437.774363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.090 4.090 4 C -0.109 4.109 5 C -0.148 4.148 6 C -0.186 4.186 7 H 0.119 0.881 8 C 0.535 3.465 9 O -0.518 6.518 10 N -0.667 5.667 11 C 0.159 3.841 12 C -0.229 4.229 13 C -0.091 4.091 14 C -0.177 4.177 15 C 0.125 3.875 16 C -0.470 4.470 17 H 0.079 0.921 18 C 0.085 3.915 19 N -0.779 5.779 20 Si 0.899 3.101 21 H -0.270 1.270 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.248 4.248 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.399 0.601 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.282 0.718 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 -10.724 -6.207 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.091 4.091 4 C -0.165 4.165 5 C -0.185 4.185 6 C -0.208 4.208 7 H 0.137 0.863 8 C 0.322 3.678 9 O -0.394 6.394 10 N -0.310 5.310 11 C 0.068 3.932 12 C -0.250 4.250 13 C -0.110 4.110 14 C -0.197 4.197 15 C 0.122 3.878 16 C -0.499 4.499 17 H 0.097 0.903 18 C -0.135 4.135 19 N -0.403 5.403 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.270 4.270 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.233 0.767 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.430 -9.967 -5.875 15.577 hybrid contribution 1.137 -0.187 0.379 1.213 sum -9.293 -10.154 -5.497 14.821 Atomic orbital electron populations 1.21826 0.95351 1.01286 1.02352 1.21089 0.96210 0.93193 1.01956 1.21576 0.91004 0.96862 0.99626 1.21466 0.97082 0.97331 1.00669 1.23183 1.01919 1.02802 0.90606 1.22354 0.95960 0.99416 1.03031 0.86322 1.19627 0.82299 0.85276 0.80646 1.90716 1.56480 1.48624 1.43559 1.43480 1.06956 1.23572 1.57027 1.17399 0.95161 0.84540 0.96148 1.20159 1.02801 0.91728 1.10319 1.20521 0.96361 0.95943 0.98132 1.21167 0.95451 0.98832 1.04225 1.17323 0.91681 0.90339 0.88435 1.19467 1.06130 0.94904 1.29349 0.90296 1.25890 0.96154 0.95058 0.96383 1.69898 1.33138 1.05975 1.31242 0.86465 0.79878 0.78663 0.82746 1.19572 1.19942 1.18248 1.20671 1.00237 0.99164 1.06880 0.92554 0.92921 0.91910 0.91803 0.91486 0.91704 0.92774 0.91353 0.88297 0.88113 0.76696 0.88739 0.89131 0.87255 0.90733 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.92 37.16 0.33 -0.89 16 2 C -0.09 -0.79 6.12 -26.73 -0.16 -0.96 16 3 C -0.09 -1.05 2.47 -154.51 -0.38 -1.43 16 4 C -0.11 -1.45 7.73 37.16 0.29 -1.16 16 5 C -0.15 -1.63 9.52 -26.75 -0.25 -1.89 16 6 C -0.19 -2.38 5.91 -91.79 -0.54 -2.93 16 7 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 8 C 0.53 9.44 7.29 -10.98 -0.08 9.36 16 9 O -0.52 -10.88 11.18 5.55 0.06 -10.82 16 10 N -0.67 -12.27 5.32 -9.91 -0.05 -12.32 16 11 C 0.16 3.68 6.15 -83.76 -0.52 3.16 16 12 C -0.23 -5.55 8.66 -39.10 -0.34 -5.89 16 13 C -0.09 -2.24 10.02 -39.69 -0.40 -2.64 16 14 C -0.18 -4.71 8.76 -38.84 -0.34 -5.05 16 15 C 0.13 3.38 5.57 -106.85 -0.60 2.78 16 16 C -0.47 -12.49 8.99 -37.74 -0.34 -12.83 16 17 H 0.08 2.02 7.98 -52.49 -0.42 1.60 16 18 C 0.09 2.14 4.90 -17.35 -0.08 2.05 16 19 N -0.78 -20.06 11.48 55.55 0.64 -19.42 16 20 Si 0.90 18.50 29.64 -169.99 -5.04 13.46 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 C -0.25 -6.13 9.71 -38.68 -0.38 -6.50 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.53 6.45 -51.93 -0.33 0.20 16 28 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.98 7.02 -51.93 -0.36 0.62 16 31 H 0.05 0.59 5.58 -51.93 -0.29 0.30 16 32 H 0.07 1.06 7.25 -51.93 -0.38 0.68 16 33 H 0.10 1.20 8.05 -51.93 -0.42 0.79 16 34 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 35 H 0.40 5.96 8.83 -40.82 -0.36 5.60 16 36 H 0.09 2.24 6.82 -52.49 -0.36 1.89 16 37 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 38 H 0.11 2.95 6.38 -52.48 -0.33 2.62 16 39 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 40 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -29.72 326.95 -9.01 -38.73 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.76 Total: 10.26 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -3.79 Total: -24.81 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.58 Total: -31.74 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.06 Total: -10.82 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.04 Total: 13.46 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.72 -9.01 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456729974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.242 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds