Wall clock time and date at job start Mon Mar 30 2020 01:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47310 * 2 1 4 4 C 1.53002 * 115.56137 * 34.30416 * 3 2 1 5 5 C 1.53001 * 117.49518 * 248.62551 * 3 2 1 6 6 C 1.52997 * 117.49992 * 180.02562 * 3 2 1 7 7 H 1.08999 * 117.49980 * 359.97438 * 6 3 2 8 8 C 1.50702 * 117.49521 * 215.00189 * 6 3 2 9 9 O 1.21290 * 120.00171 * 0.08002 * 8 6 3 10 10 N 1.34777 * 119.99599 * 180.08583 * 8 6 3 11 11 C 1.39942 * 119.99486 * 174.71618 * 10 8 6 12 12 C 1.39288 * 119.94839 * 321.02161 * 11 10 8 13 13 C 1.38495 * 120.42794 * 179.76300 * 12 11 10 14 14 C 1.37684 * 120.31776 * 0.52126 * 13 12 11 15 15 C 1.40740 * 119.88858 * 359.74160 * 14 13 12 16 16 C 1.41411 * 120.21067 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99824 * 157.88235 * 16 15 14 18 18 C 1.39924 * 119.99574 * 337.88117 * 16 15 14 19 19 N 1.30827 * 120.00678 * 331.87483 * 18 16 15 20 20 Si 1.86808 * 119.99613 * 151.87653 * 18 16 15 21 21 H 1.48498 * 109.46820 * 94.98740 * 20 18 16 22 22 H 1.48501 * 109.47045 * 214.98113 * 20 18 16 23 23 H 1.48495 * 109.47449 * 334.98591 * 20 18 16 24 24 C 1.38245 * 119.94360 * 141.30339 * 11 10 8 25 25 H 1.09003 * 109.47189 * 59.99884 * 1 2 3 26 26 H 1.08998 * 109.47542 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47635 * 300.00584 * 1 2 3 28 28 H 1.08997 * 109.47002 * 239.99754 * 2 1 3 29 29 H 1.08999 * 109.47050 * 119.99365 * 2 1 3 30 30 H 1.08998 * 109.47173 * 205.69474 * 4 3 2 31 31 H 1.09001 * 109.47084 * 325.69448 * 4 3 2 32 32 H 1.08997 * 109.46751 * 85.69240 * 4 3 2 33 33 H 1.08996 * 117.49765 * 145.02067 * 5 3 2 34 34 H 1.09003 * 117.49904 * 359.97438 * 5 3 2 35 35 H 0.96994 * 120.00467 * 354.71277 * 10 8 6 36 36 H 1.07999 * 119.78775 * 0.02670 * 12 11 10 37 37 H 1.07998 * 119.83704 * 180.28366 * 13 12 11 38 38 H 1.08004 * 120.05454 * 179.72163 * 14 13 12 39 39 H 0.96997 * 120.00249 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.16122 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1851 2.4450 0.7779 5 6 2.7418 1.9436 -1.2638 6 6 3.5550 1.6562 -0.0006 7 1 4.1884 0.7691 -0.0006 8 6 4.0913 2.8375 0.7661 9 8 3.3294 3.5753 1.3545 10 7 5.4178 3.0742 0.7979 11 6 5.9075 4.2305 1.4156 12 6 5.2233 5.4358 1.2771 13 6 5.6964 6.5851 1.8881 14 6 6.8551 6.5508 2.6310 15 6 7.5601 5.3412 2.7753 16 6 8.7512 5.2983 3.5363 17 1 9.0960 4.3609 3.9469 18 6 9.4828 6.4704 3.7572 19 7 9.4357 7.4451 2.8858 20 14 10.5270 6.6434 5.2964 21 1 11.9259 6.2487 4.9925 22 1 10.5000 8.0550 5.7568 23 1 9.9853 5.7642 6.3635 24 6 7.0727 4.1758 2.1575 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.3350 3.4444 0.3694 31 1 0.1338 2.1708 0.6906 32 1 1.4775 2.4340 1.8279 33 1 2.5947 2.9874 -1.5410 34 1 2.8406 1.2454 -2.0951 35 1 6.0329 2.4432 0.3927 36 1 4.3157 5.4735 0.6929 37 1 5.1558 7.5136 1.7781 38 1 7.2226 7.4506 3.1019 39 1 9.9432 8.2574 3.0388 40 1 7.6061 3.2426 2.2620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456729974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:55 Heat of formation + Delta-G solvation = -19.237424 kcal Electronic energy + Delta-G solvation = -20297.157728 eV Core-core repulsion = 17269.161241 eV Total energy + Delta-G solvation = -3027.996487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54230 -39.62156 -38.21724 -36.10538 -34.89972 -33.09489 -31.82042 -30.25722 -28.95497 -27.21514 -25.62171 -24.61795 -22.97046 -22.58510 -21.05852 -19.85841 -19.28839 -18.11455 -17.45761 -16.81196 -16.64228 -16.21789 -15.72363 -15.52095 -15.25340 -14.98371 -14.62525 -14.15215 -14.03779 -13.67656 -13.47314 -13.33438 -13.23022 -13.00400 -12.83563 -12.64386 -12.52473 -12.29390 -12.00960 -11.89343 -11.64769 -11.57564 -11.14268 -11.03854 -10.81796 -10.72300 -10.36406 -9.48360 -8.80232 -8.75160 -6.35042 0.83749 0.96009 1.37883 1.46327 1.55280 1.69120 2.18318 2.22767 2.66405 2.81891 3.61173 3.67953 3.71245 3.85340 4.10996 4.16977 4.39723 4.47483 4.56492 4.61974 4.77025 4.85790 4.91293 4.96267 4.97706 4.99077 5.03582 5.10812 5.15354 5.20625 5.24676 5.31086 5.34103 5.44494 5.60689 5.73832 5.84770 6.02777 6.07014 6.27691 6.59567 6.71390 6.88825 6.96362 7.34358 8.24495 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.043958 B = 0.003391 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.813506 B = 8253.989294 C = 8437.774363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 C -0.091 4.091 4 C -0.105 4.105 5 C -0.131 4.131 6 C -0.193 4.193 7 H 0.151 0.849 8 C 0.529 3.471 9 O -0.557 6.557 10 N -0.662 5.662 11 C 0.169 3.831 12 C -0.242 4.242 13 C -0.093 4.093 14 C -0.205 4.205 15 C 0.099 3.901 16 C -0.502 4.502 17 H 0.080 0.920 18 C 0.046 3.954 19 N -0.808 5.808 20 Si 0.976 3.024 21 H -0.258 1.258 22 H -0.265 1.265 23 H -0.260 1.260 24 C -0.263 4.263 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.137 0.863 35 H 0.417 0.583 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.292 0.708 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.026 -12.740 -6.933 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.162 4.162 5 C -0.168 4.168 6 C -0.214 4.214 7 H 0.168 0.832 8 C 0.318 3.682 9 O -0.435 6.435 10 N -0.307 5.307 11 C 0.076 3.924 12 C -0.263 4.263 13 C -0.111 4.111 14 C -0.225 4.225 15 C 0.096 3.904 16 C -0.531 4.531 17 H 0.098 0.902 18 C -0.172 4.172 19 N -0.432 5.432 20 Si 0.796 3.204 21 H -0.182 1.182 22 H -0.190 1.190 23 H -0.184 1.184 24 C -0.284 4.284 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.155 0.845 35 H 0.254 0.746 36 H 0.114 0.886 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.501 -12.015 -6.636 17.282 hybrid contribution 1.074 0.443 0.544 1.283 sum -9.427 -11.571 -6.092 16.121 Atomic orbital electron populations 1.21827 0.94741 1.02249 1.02047 1.21117 0.96703 0.91099 1.03036 1.21706 0.89748 0.98083 0.99643 1.21377 0.99000 0.96804 0.99053 1.23304 0.99792 1.02873 0.90878 1.22376 0.97056 0.98152 1.03788 0.83182 1.20563 0.81408 0.86123 0.80057 1.90709 1.57225 1.50400 1.45125 1.43475 1.07967 1.22555 1.56742 1.17445 0.94177 0.85876 0.94898 1.20290 1.03077 0.92207 1.10761 1.20755 0.95896 0.97083 0.97413 1.21117 0.96684 0.98581 1.06112 1.17704 0.92382 0.91247 0.89067 1.19745 1.06768 0.95950 1.30592 0.90218 1.26768 0.97202 0.94137 0.99121 1.69921 1.33824 1.06621 1.32832 0.85299 0.78275 0.78865 0.77949 1.18218 1.18966 1.18378 1.20839 1.01157 0.99155 1.07288 0.92218 0.91366 0.92874 0.89580 0.91512 0.94258 0.90566 0.94142 0.89877 0.84518 0.74570 0.88571 0.87316 0.88554 0.89711 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.92 71.98 0.64 -1.38 16 2 C -0.08 -1.22 6.12 30.59 0.19 -1.03 16 3 C -0.09 -1.93 2.47 -52.18 -0.13 -2.05 16 4 C -0.11 -2.80 7.73 71.98 0.56 -2.24 16 5 C -0.13 -2.52 9.52 30.58 0.29 -2.23 16 6 C -0.19 -4.48 5.91 -11.55 -0.07 -4.55 16 7 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 8 C 0.53 18.38 7.29 87.66 0.64 19.02 16 9 O -0.56 -23.83 11.18 -3.06 -0.03 -23.87 16 10 N -0.66 -23.94 5.32 -303.64 -1.62 -25.56 16 11 C 0.17 7.90 6.15 38.10 0.23 8.14 16 12 C -0.24 -11.98 8.66 22.58 0.20 -11.78 16 13 C -0.09 -4.71 10.02 22.20 0.22 -4.49 16 14 C -0.21 -11.31 8.76 22.75 0.20 -11.12 16 15 C 0.10 5.50 5.57 -21.31 -0.12 5.38 16 16 C -0.50 -27.30 8.99 23.46 0.21 -27.09 16 17 H 0.08 4.16 7.98 -2.91 -0.02 4.14 16 18 C 0.05 2.31 4.90 85.25 0.42 2.73 16 19 N -0.81 -42.23 11.48 21.82 0.25 -41.98 16 20 Si 0.98 37.85 29.64 68.60 2.03 39.89 16 21 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 22 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 24 C -0.26 -13.22 9.71 22.85 0.22 -13.00 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.80 6.45 -2.39 -0.02 0.79 16 28 H 0.09 0.94 7.90 -2.39 -0.02 0.92 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 1.21 7.02 -2.39 -0.02 1.20 16 31 H 0.08 1.62 5.58 -2.39 -0.01 1.61 16 32 H 0.04 1.28 7.25 -2.39 -0.02 1.26 16 33 H 0.08 1.90 8.05 -2.39 -0.02 1.88 16 34 H 0.14 1.70 8.05 -2.39 -0.02 1.68 16 35 H 0.42 11.84 8.83 -92.71 -0.82 11.02 16 36 H 0.10 4.67 6.82 -2.91 -0.02 4.65 16 37 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 38 H 0.10 5.44 6.38 -2.91 -0.02 5.42 16 39 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 40 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -66.71 326.95 4.56 -62.15 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.23 Total: 35.07 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 3.70 Total: -45.70 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -1.37 Total: -67.54 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.03 Total: -23.87 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.89 kcal Total: -66.71 4.56 -62.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456729974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.908 kcal (2) G-P(sol) polarization free energy of solvation -66.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds