Wall clock time and date at job start Mon Mar 30 2020 01:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47005 * 2 1 4 4 C 1.53001 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.08993 * 115.56143 * 29.31605 * 4 3 2 6 6 C 1.52998 * 117.49710 * 243.62175 * 4 3 2 7 7 C 1.52995 * 60.00235 * 252.51332 * 6 4 3 8 8 H 1.08999 * 117.49825 * 107.51381 * 7 6 4 9 9 C 1.50701 * 117.50247 * 252.51190 * 7 6 4 10 10 O 1.21292 * 119.99558 * 68.60499 * 9 7 6 11 11 N 1.34777 * 120.00148 * 248.61124 * 9 7 6 12 12 C 1.39926 * 119.99747 * 184.79519 * 11 9 7 13 13 C 1.39296 * 119.94811 * 213.60791 * 12 11 9 14 14 C 1.38485 * 120.43219 * 179.97438 * 13 12 11 15 15 C 1.37685 * 120.32209 * 359.79018 * 14 13 12 16 16 C 1.40741 * 119.88424 * 0.46750 * 15 14 13 17 17 C 1.41400 * 120.21186 * 179.78960 * 16 15 14 18 18 H 1.08002 * 120.00400 * 153.31982 * 17 16 15 19 19 C 1.39934 * 120.00138 * 333.31773 * 17 16 15 20 20 N 1.30828 * 119.99782 * 329.93918 * 19 17 16 21 21 Si 1.86795 * 120.00108 * 149.93101 * 19 17 16 22 22 H 1.48504 * 109.47272 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47017 * 60.00673 * 21 19 17 24 24 H 1.48498 * 109.47419 * 300.00488 * 21 19 17 25 25 C 1.38250 * 119.95246 * 33.63474 * 12 11 9 26 26 H 1.09001 * 109.46844 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46997 * 299.99726 * 1 2 3 28 28 H 1.08998 * 109.47223 * 60.00207 * 1 2 3 29 29 H 1.09004 * 109.47299 * 240.00337 * 2 1 3 30 30 H 1.08997 * 109.47693 * 120.00037 * 2 1 3 31 31 H 1.09004 * 109.46816 * 60.00041 * 3 2 1 32 32 H 1.08997 * 109.46925 * 300.00507 * 3 2 1 33 33 H 1.09005 * 117.49732 * 145.02031 * 6 4 3 34 34 H 1.08998 * 117.50321 * 0.02562 * 6 4 3 35 35 H 0.96999 * 119.99368 * 4.78996 * 11 9 7 36 36 H 1.08004 * 119.78108 * 0.02659 * 13 12 11 37 37 H 1.08002 * 119.84037 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.06054 * 180.22798 * 15 14 13 39 39 H 0.97003 * 120.00038 * 353.34150 * 20 19 17 40 40 H 1.08001 * 120.15394 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0405 0.5851 -0.4805 6 6 4.2759 2.0457 1.2167 7 6 4.2765 2.7946 -0.1175 8 1 3.6515 3.6842 -0.1955 9 6 5.5696 2.8388 -0.8901 10 8 6.0124 1.8262 -1.3897 11 7 6.2339 4.0036 -1.0259 12 6 7.3801 4.0660 -1.8261 13 6 8.4243 4.9205 -1.4798 14 6 9.5634 4.9899 -2.2642 15 6 9.6781 4.2110 -3.3938 16 6 8.6289 3.3470 -3.7593 17 6 8.7375 2.5474 -4.9204 18 1 8.1943 1.6163 -4.9877 19 6 9.5487 2.9623 -5.9824 20 7 9.7283 4.2383 -6.2085 21 14 10.3752 1.6943 -7.0771 22 1 11.1743 2.3864 -8.1201 23 1 9.3399 0.8498 -7.7253 24 1 11.2690 0.8387 -6.2560 25 6 7.4743 3.2801 -2.9596 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 5.2109 1.5850 1.5357 34 1 3.6504 2.4421 2.0165 35 1 5.9174 4.7985 -0.5689 36 1 8.3453 5.5322 -0.5932 37 1 10.3674 5.6554 -1.9865 38 1 10.5699 4.2658 -4.0005 39 1 9.2250 4.8959 -5.7034 40 1 6.6652 2.6173 -3.2289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456750142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:47 Heat of formation + Delta-G solvation = -20.464796 kcal Electronic energy + Delta-G solvation = -19968.711696 eV Core-core repulsion = 16940.661986 eV Total energy + Delta-G solvation = -3028.049710 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.02674 -37.97990 -36.77011 -34.60578 -33.98221 -33.06191 -29.69891 -28.58333 -27.46739 -25.06217 -24.16728 -22.15879 -21.37789 -20.90538 -20.42038 -19.43528 -18.13746 -17.00379 -15.88212 -15.40229 -15.05921 -14.80864 -14.45237 -14.28086 -14.02993 -13.59035 -13.39220 -13.01948 -12.68175 -12.41553 -12.16420 -12.10719 -11.81967 -11.53729 -11.45754 -11.19625 -11.04749 -11.00402 -10.53341 -10.41627 -10.36182 -10.18206 -10.07226 -9.69658 -9.36684 -9.02959 -8.88378 -7.63181 -7.22294 -6.99808 -4.38625 2.44086 2.83573 3.09509 3.20331 3.31823 3.41583 3.48860 3.86179 4.06643 4.50485 4.56983 4.67684 4.76280 4.91557 4.98037 5.12160 5.20351 5.34648 5.52647 5.53731 5.59533 5.61664 5.68591 5.85076 5.88663 6.04861 6.07901 6.13315 6.28145 6.32712 6.66447 6.87780 6.94106 6.97868 7.43903 7.58961 7.74187 7.83534 7.91171 8.14121 8.22627 8.31834 8.71093 8.82736 8.93720 10.06576 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020699 B = 0.003805 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.367869 B = 7357.022295 C = 8434.769040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.118 4.118 5 H 0.119 0.881 6 C -0.151 4.151 7 C -0.188 4.188 8 H 0.121 0.879 9 C 0.533 3.467 10 O -0.517 6.517 11 N -0.666 5.666 12 C 0.164 3.836 13 C -0.277 4.277 14 C -0.071 4.071 15 C -0.229 4.229 16 C 0.109 3.891 17 C -0.525 4.525 18 H 0.076 0.924 19 C 0.044 3.956 20 N -0.791 5.791 21 Si 1.062 2.938 22 H -0.274 1.274 23 H -0.276 1.276 24 H -0.274 1.274 25 C -0.215 4.215 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.399 0.601 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.298 0.702 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.891 -2.142 11.097 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.127 4.127 4 C -0.136 4.136 5 H 0.137 0.863 6 C -0.188 4.188 7 C -0.209 4.209 8 H 0.139 0.861 9 C 0.319 3.681 10 O -0.392 6.392 11 N -0.309 5.309 12 C 0.072 3.928 13 C -0.299 4.299 14 C -0.090 4.090 15 C -0.248 4.248 16 C 0.106 3.894 17 C -0.553 4.553 18 H 0.095 0.905 19 C -0.179 4.179 20 N -0.413 5.413 21 Si 0.885 3.115 22 H -0.199 1.199 23 H -0.201 1.201 24 H -0.199 1.199 25 C -0.237 4.237 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.233 0.767 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.559 -2.992 9.451 15.227 hybrid contribution -1.199 0.845 1.625 2.189 sum -12.758 -2.147 11.076 17.031 Atomic orbital electron populations 1.21779 0.95952 1.01577 1.01702 1.21508 0.95546 0.96559 1.02446 1.21239 0.91990 0.97343 1.02097 1.22448 0.94542 0.95672 1.00988 0.86335 1.23091 1.03110 1.02326 0.90265 1.22312 0.97853 0.98775 1.01979 0.86080 1.19667 0.84615 0.83382 0.80386 1.90745 1.67479 1.33650 1.47340 1.43413 1.27335 1.11511 1.48646 1.17500 0.85683 0.99054 0.90575 1.19975 0.96362 1.09648 1.03883 1.20378 0.95738 0.97856 0.95010 1.21104 0.99586 1.04433 0.99703 1.17517 0.89468 0.90151 0.92271 1.20521 1.26570 1.07379 1.00797 0.90542 1.26998 0.94063 0.99080 0.97721 1.70451 1.33300 1.02540 1.35004 0.83698 0.77101 0.74832 0.75837 1.19916 1.20098 1.19924 1.20956 0.99515 1.06206 0.97002 0.92783 0.92880 0.92730 0.91660 0.91834 0.91749 0.91371 0.88306 0.87981 0.76682 0.89124 0.88879 0.87929 0.88966 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.06 5.89 -26.73 -0.16 -1.22 16 3 C -0.09 -0.82 5.50 -26.73 -0.15 -0.97 16 4 C -0.12 -1.40 5.25 -90.62 -0.48 -1.87 16 5 H 0.12 1.67 7.60 -51.93 -0.39 1.28 16 6 C -0.15 -1.63 9.88 -26.73 -0.26 -1.89 16 7 C -0.19 -2.41 5.91 -91.77 -0.54 -2.95 16 8 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 9 C 0.53 9.78 7.35 -10.98 -0.08 9.70 16 10 O -0.52 -11.89 13.94 5.55 0.08 -11.81 16 11 N -0.67 -12.23 5.34 -9.91 -0.05 -12.28 16 12 C 0.16 3.80 6.27 -83.76 -0.53 3.27 16 13 C -0.28 -6.20 9.97 -39.10 -0.39 -6.59 16 14 C -0.07 -1.66 10.02 -39.69 -0.40 -2.06 16 15 C -0.23 -6.03 8.17 -38.84 -0.32 -6.35 16 16 C 0.11 3.05 5.23 -106.85 -0.56 2.49 16 17 C -0.52 -14.72 8.93 -37.74 -0.34 -15.06 16 18 H 0.08 2.15 8.00 -52.49 -0.42 1.73 16 19 C 0.04 1.15 4.80 -17.34 -0.08 1.07 16 20 N -0.79 -21.38 12.42 55.55 0.69 -20.70 16 21 Si 1.06 22.33 30.02 -169.99 -5.10 17.23 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 C -0.22 -5.73 8.40 -38.68 -0.32 -6.06 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.10 0.84 8.03 -51.93 -0.42 0.42 16 35 H 0.40 5.68 8.82 -40.82 -0.36 5.32 16 36 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.10 2.76 6.77 -52.49 -0.36 2.40 16 39 H 0.30 8.25 7.19 -40.82 -0.29 7.95 16 40 H 0.11 2.96 6.41 -52.49 -0.34 2.63 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -31.15 336.44 -9.56 -40.72 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -6.01 Total: 11.02 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -4.23 Total: -29.24 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.64 Total: -32.98 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.10 Total: 17.23 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.15 -9.56 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456750142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.251 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds