Wall clock time and date at job start Mon Mar 30 2020 01:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47005 * 2 1 4 4 C 1.53001 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.08993 * 115.56143 * 29.31605 * 4 3 2 6 6 C 1.52998 * 117.49710 * 243.62175 * 4 3 2 7 7 C 1.52995 * 60.00235 * 252.51332 * 6 4 3 8 8 H 1.08999 * 117.49825 * 107.51381 * 7 6 4 9 9 C 1.50701 * 117.50247 * 252.51190 * 7 6 4 10 10 O 1.21292 * 119.99558 * 68.60499 * 9 7 6 11 11 N 1.34777 * 120.00148 * 248.61124 * 9 7 6 12 12 C 1.39926 * 119.99747 * 184.79519 * 11 9 7 13 13 C 1.39296 * 119.94811 * 213.60791 * 12 11 9 14 14 C 1.38485 * 120.43219 * 179.97438 * 13 12 11 15 15 C 1.37685 * 120.32209 * 359.79018 * 14 13 12 16 16 C 1.40741 * 119.88424 * 0.46750 * 15 14 13 17 17 C 1.41400 * 120.21186 * 179.78960 * 16 15 14 18 18 H 1.08002 * 120.00400 * 153.31982 * 17 16 15 19 19 C 1.39934 * 120.00138 * 333.31773 * 17 16 15 20 20 N 1.30828 * 119.99782 * 329.93918 * 19 17 16 21 21 Si 1.86795 * 120.00108 * 149.93101 * 19 17 16 22 22 H 1.48504 * 109.47272 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47017 * 60.00673 * 21 19 17 24 24 H 1.48498 * 109.47419 * 300.00488 * 21 19 17 25 25 C 1.38250 * 119.95246 * 33.63474 * 12 11 9 26 26 H 1.09001 * 109.46844 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46997 * 299.99726 * 1 2 3 28 28 H 1.08998 * 109.47223 * 60.00207 * 1 2 3 29 29 H 1.09004 * 109.47299 * 240.00337 * 2 1 3 30 30 H 1.08997 * 109.47693 * 120.00037 * 2 1 3 31 31 H 1.09004 * 109.46816 * 60.00041 * 3 2 1 32 32 H 1.08997 * 109.46925 * 300.00507 * 3 2 1 33 33 H 1.09005 * 117.49732 * 145.02031 * 6 4 3 34 34 H 1.08998 * 117.50321 * 0.02562 * 6 4 3 35 35 H 0.96999 * 119.99368 * 4.78996 * 11 9 7 36 36 H 1.08004 * 119.78108 * 0.02659 * 13 12 11 37 37 H 1.08002 * 119.84037 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.06054 * 180.22798 * 15 14 13 39 39 H 0.97003 * 120.00038 * 353.34150 * 20 19 17 40 40 H 1.08001 * 120.15394 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0405 0.5851 -0.4805 6 6 4.2759 2.0457 1.2167 7 6 4.2765 2.7946 -0.1175 8 1 3.6515 3.6842 -0.1955 9 6 5.5696 2.8388 -0.8901 10 8 6.0124 1.8262 -1.3897 11 7 6.2339 4.0036 -1.0259 12 6 7.3801 4.0660 -1.8261 13 6 8.4243 4.9205 -1.4798 14 6 9.5634 4.9899 -2.2642 15 6 9.6781 4.2110 -3.3938 16 6 8.6289 3.3470 -3.7593 17 6 8.7375 2.5474 -4.9204 18 1 8.1943 1.6163 -4.9877 19 6 9.5487 2.9623 -5.9824 20 7 9.7283 4.2383 -6.2085 21 14 10.3752 1.6943 -7.0771 22 1 11.1743 2.3864 -8.1201 23 1 9.3399 0.8498 -7.7253 24 1 11.2690 0.8387 -6.2560 25 6 7.4743 3.2801 -2.9596 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 5.2109 1.5850 1.5357 34 1 3.6504 2.4421 2.0165 35 1 5.9174 4.7985 -0.5689 36 1 8.3453 5.5322 -0.5932 37 1 10.3674 5.6554 -1.9865 38 1 10.5699 4.2658 -4.0005 39 1 9.2250 4.8959 -5.7034 40 1 6.6652 2.6173 -3.2289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456750142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:47 Heat of formation + Delta-G solvation = -37.891775 kcal Electronic energy + Delta-G solvation = -19969.467387 eV Core-core repulsion = 16940.661986 eV Total energy + Delta-G solvation = -3028.805401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51903 -39.55763 -38.14069 -36.41458 -34.94758 -34.72086 -31.69041 -30.31062 -28.32557 -27.09321 -25.49057 -23.22891 -22.91924 -22.49241 -21.46661 -20.91927 -20.02407 -18.37442 -17.64635 -16.84677 -16.26872 -16.24123 -15.91845 -15.70331 -15.64563 -15.17470 -14.63463 -14.23100 -14.10055 -13.86298 -13.74439 -13.42760 -13.15061 -12.95248 -12.81255 -12.37832 -12.27126 -12.19985 -11.97537 -11.94883 -11.69931 -11.59283 -11.20445 -11.11522 -10.98882 -10.86319 -10.70339 -9.65786 -9.27721 -8.89175 -6.51075 0.66624 0.88569 1.46360 1.50059 1.65239 1.78213 2.09905 2.29764 2.59551 2.81049 3.47470 3.57798 3.67755 3.82205 4.12999 4.18309 4.27897 4.30561 4.35850 4.51124 4.61847 4.75010 4.79536 4.85663 4.91656 4.93501 4.95954 5.02533 5.05503 5.08700 5.19826 5.34746 5.39256 5.49506 5.51144 5.63912 5.73797 5.80384 5.86214 6.22592 6.33869 6.55510 6.77826 6.86867 7.24076 7.96614 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020699 B = 0.003805 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.367869 B = 7357.022295 C = 8434.769040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.081 4.081 4 C -0.125 4.125 5 H 0.084 0.916 6 C -0.126 4.126 7 C -0.191 4.191 8 H 0.157 0.843 9 C 0.526 3.474 10 O -0.573 6.573 11 N -0.655 5.655 12 C 0.170 3.830 13 C -0.261 4.261 14 C -0.069 4.069 15 C -0.248 4.248 16 C 0.082 3.918 17 C -0.569 4.569 18 H 0.057 0.943 19 C 0.013 3.987 20 N -0.804 5.804 21 Si 1.113 2.887 22 H -0.262 1.262 23 H -0.261 1.261 24 H -0.266 1.266 25 C -0.245 4.245 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.143 0.857 35 H 0.423 0.577 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.282 0.718 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.025 -0.836 13.595 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.119 4.119 4 C -0.144 4.144 5 H 0.102 0.898 6 C -0.163 4.163 7 C -0.212 4.212 8 H 0.175 0.825 9 C 0.315 3.685 10 O -0.451 6.451 11 N -0.300 5.300 12 C 0.076 3.924 13 C -0.282 4.282 14 C -0.088 4.088 15 C -0.268 4.268 16 C 0.079 3.921 17 C -0.597 4.597 18 H 0.075 0.925 19 C -0.205 4.205 20 N -0.426 5.426 21 Si 0.930 3.070 22 H -0.186 1.186 23 H -0.186 1.186 24 H -0.191 1.191 25 C -0.267 4.267 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.161 0.839 35 H 0.262 0.738 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.734 -1.640 11.996 17.571 hybrid contribution -0.923 0.481 1.041 1.472 sum -13.657 -1.159 13.036 18.916 Atomic orbital electron populations 1.21757 0.94673 1.02043 1.02256 1.21514 0.96632 0.96309 1.01802 1.21230 0.89644 0.97763 1.03213 1.22477 0.96251 0.93923 1.01713 0.89771 1.23235 1.02743 1.00270 0.90100 1.22329 0.95231 1.00763 1.02887 0.82531 1.20737 0.85816 0.82289 0.79635 1.90733 1.69182 1.35631 1.49594 1.43358 1.25972 1.12868 1.47838 1.17621 0.87533 0.97518 0.89735 1.20478 0.94843 1.08453 1.04395 1.20809 0.97200 0.97141 0.93631 1.21093 0.98893 1.05658 1.01168 1.17834 0.90465 0.90968 0.92799 1.20649 1.29062 1.07520 1.02496 0.92497 1.28389 0.93662 1.00200 0.98231 1.70566 1.33987 1.02767 1.35247 0.83077 0.76722 0.72706 0.74505 1.18620 1.18567 1.19069 1.20901 0.98945 1.07638 0.99187 0.92458 0.91594 0.92857 0.93462 0.91488 0.89117 0.91607 0.89779 0.83872 0.73820 0.84544 0.85243 0.89279 0.90615 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.20 16 2 C -0.12 -2.01 5.89 30.60 0.18 -1.83 16 3 C -0.08 -1.31 5.50 30.60 0.17 -1.14 16 4 C -0.12 -2.80 5.25 -10.79 -0.06 -2.86 16 5 H 0.08 2.50 7.60 -2.39 -0.02 2.48 16 6 C -0.13 -2.34 9.88 30.59 0.30 -2.04 16 7 C -0.19 -4.48 5.91 -11.54 -0.07 -4.55 16 8 H 0.16 2.58 8.14 -2.39 -0.02 2.56 16 9 C 0.53 19.15 7.35 87.66 0.64 19.80 16 10 O -0.57 -27.59 13.94 -3.07 -0.04 -27.63 16 11 N -0.66 -23.05 5.34 -303.64 -1.62 -24.68 16 12 C 0.17 7.78 6.27 38.11 0.24 8.02 16 13 C -0.26 -10.95 9.97 22.58 0.23 -10.73 16 14 C -0.07 -3.14 10.02 22.20 0.22 -2.92 16 15 C -0.25 -13.41 8.17 22.75 0.19 -13.22 16 16 C 0.08 4.84 5.23 -21.31 -0.11 4.73 16 17 C -0.57 -34.02 8.93 23.46 0.21 -33.81 16 18 H 0.06 3.48 8.00 -2.91 -0.02 3.45 16 19 C 0.01 0.69 4.80 85.25 0.41 1.09 16 20 N -0.80 -45.05 12.42 21.82 0.27 -44.78 16 21 Si 1.11 46.15 30.02 68.60 2.06 48.21 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 25 C -0.25 -13.65 8.40 22.85 0.19 -13.46 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.02 7.87 -2.38 -0.02 1.00 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.14 1.55 8.03 -2.39 -0.02 1.53 16 35 H 0.42 10.61 8.82 -92.71 -0.82 9.80 16 36 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 37 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.09 4.96 6.77 -2.91 -0.02 4.94 16 39 H 0.28 16.41 7.19 -92.71 -0.67 15.75 16 40 H 0.08 4.83 6.41 -2.91 -0.02 4.81 16 Total: -1.00 -73.80 336.44 4.44 -69.37 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.32 Total: 33.64 kcal Atomic # 6 Polarization: -57.58 SS G_CDS: 3.45 Total: -54.12 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -1.35 Total: -69.46 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.04 Total: -27.63 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.06 Total: 48.21 kcal Total: -73.80 4.44 -69.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456750142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.475 kcal (2) G-P(sol) polarization free energy of solvation -73.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds