Wall clock time and date at job start Mon Mar 30 2020 01:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47193 * 2 1 4 4 C 1.50698 * 109.47336 * 120.00371 * 2 1 3 5 5 O 1.21286 * 120.00305 * 119.99945 * 4 2 1 6 6 N 1.34779 * 119.99801 * 299.99648 * 4 2 1 7 7 C 1.39933 * 119.99945 * 184.41119 * 6 4 2 8 8 C 1.39298 * 119.94561 * 144.42455 * 7 6 4 9 9 C 1.38487 * 120.42643 * 179.72292 * 8 7 6 10 10 C 1.37687 * 120.32292 * 0.55237 * 9 8 7 11 11 C 1.40747 * 119.88104 * 359.72535 * 10 9 8 12 12 C 1.41411 * 120.20384 * 180.02562 * 11 10 9 13 13 H 1.08008 * 119.99630 * 148.83896 * 12 11 10 14 14 C 1.39929 * 120.00224 * 328.83700 * 12 11 10 15 15 N 1.30829 * 119.99783 * 167.80672 * 14 12 11 16 16 Si 1.86796 * 120.00204 * 347.81213 * 14 12 11 17 17 H 1.48499 * 109.47494 * 92.58803 * 16 14 12 18 18 H 1.48500 * 109.46939 * 212.59024 * 16 14 12 19 19 H 1.48499 * 109.46963 * 332.58510 * 16 14 12 20 20 C 1.38241 * 119.94669 * 324.69852 * 7 6 4 21 21 C 1.53001 * 109.46867 * 240.00313 * 2 1 3 22 22 C 1.53003 * 117.50316 * 128.74787 * 21 2 1 23 23 C 1.53002 * 117.50168 * 60.08343 * 21 2 1 24 24 H 1.09006 * 109.46969 * 300.00097 * 1 2 3 25 25 H 1.09000 * 109.47346 * 59.99779 * 1 2 3 26 26 H 1.08997 * 109.47563 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47402 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47560 * 299.99995 * 3 2 1 29 29 H 1.08998 * 109.47294 * 59.99730 * 3 2 1 30 30 H 0.96998 * 119.99681 * 4.68764 * 6 4 2 31 31 H 1.08000 * 119.78484 * 0.02562 * 8 7 6 32 32 H 1.07995 * 119.84103 * 180.28105 * 9 8 7 33 33 H 1.07992 * 120.05766 * 179.74830 * 10 9 8 34 34 H 0.97000 * 120.00139 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.16380 * 359.97438 * 20 7 6 36 36 H 1.08999 * 115.54920 * 274.41461 * 21 2 1 37 37 H 1.09004 * 117.49445 * 359.97438 * 22 21 2 38 38 H 1.08996 * 117.50087 * 145.01827 * 22 21 2 39 39 H 1.08995 * 117.49796 * 214.97963 * 23 21 2 40 40 H 1.08995 * 117.49910 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6966 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.2475 -0.8532 3.5955 8 6 2.5668 -0.0771 4.7074 9 6 3.0970 -0.6645 5.8439 10 6 3.3252 -2.0218 5.8830 11 6 3.0129 -2.8178 4.7650 12 6 3.2439 -4.2125 4.7979 13 1 2.6044 -4.8792 4.2383 14 6 4.3010 -4.7290 5.5555 15 7 4.3758 -6.0153 5.7824 16 14 5.6052 -3.5819 6.2429 17 1 5.2243 -3.1657 7.6165 18 1 6.9120 -4.2860 6.2835 19 1 5.7162 -2.3820 5.3750 20 6 2.4693 -2.2176 3.6155 21 6 2.0399 -0.7212 -1.2493 22 6 3.0763 0.0039 -2.1102 23 6 1.6373 -0.1483 -2.6097 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.0946 0.4969 2.5447 31 1 2.3951 0.9889 4.6846 32 1 3.3368 -0.0544 6.7021 33 1 3.7426 -2.4748 6.7700 34 1 5.1083 -6.3733 6.3079 35 1 2.2259 -2.8196 2.7525 36 1 2.1252 -1.8046 -1.1648 37 1 3.3944 0.9951 -1.7867 38 1 3.8430 -0.6024 -2.5924 39 1 1.4581 -0.8547 -3.4201 40 1 1.0094 0.7427 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456754099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:16 Heat of formation + Delta-G solvation = 3.152413 kcal Electronic energy + Delta-G solvation = -20929.765230 eV Core-core repulsion = 17902.739639 eV Total energy + Delta-G solvation = -3027.025591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.43912 -38.28445 -36.98436 -34.53232 -33.45404 -32.72377 -30.27181 -28.50522 -27.62690 -25.18576 -24.56742 -22.47541 -22.28756 -20.83702 -20.39895 -18.53125 -17.81613 -16.93411 -15.93326 -15.91227 -15.11082 -14.92376 -14.53542 -14.47144 -13.95386 -13.49358 -12.99590 -12.86536 -12.68439 -12.53350 -12.34842 -12.18214 -11.96033 -11.62827 -11.59001 -11.20718 -11.03374 -10.87999 -10.65165 -10.63705 -10.37961 -10.04197 -9.96475 -9.72072 -9.47928 -9.03713 -8.90977 -7.62367 -7.12317 -6.85189 -4.43502 2.42646 2.65813 3.11345 3.17438 3.28024 3.38909 3.47050 3.83167 4.05753 4.44705 4.55445 4.68204 4.80727 4.95145 5.00586 5.15136 5.33852 5.40579 5.46764 5.53647 5.58702 5.69207 5.76145 5.82435 5.99804 6.02532 6.04992 6.07843 6.20215 6.29366 6.43269 6.68034 6.79307 6.85860 7.24185 7.34929 7.55016 7.63269 7.94121 8.04918 8.11722 8.42274 8.66907 8.70668 8.87313 10.17664 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025759 B = 0.004795 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.722198 B = 5837.461070 C = 6310.410125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C -0.144 4.144 4 C 0.515 3.485 5 O -0.508 6.508 6 N -0.669 5.669 7 C 0.160 3.840 8 C -0.263 4.263 9 C -0.066 4.066 10 C -0.249 4.249 11 C 0.101 3.899 12 C -0.440 4.440 13 H 0.090 0.910 14 C 0.082 3.918 15 N -0.816 5.816 16 Si 0.916 3.084 17 H -0.271 1.271 18 H -0.294 1.294 19 H -0.243 1.243 20 C -0.194 4.194 21 C -0.128 4.128 22 C -0.181 4.181 23 C -0.179 4.179 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.399 0.601 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.284 0.716 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.517 14.004 -10.726 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.053 4.053 3 C -0.201 4.201 4 C 0.301 3.699 5 O -0.382 6.382 6 N -0.313 5.313 7 C 0.068 3.932 8 C -0.284 4.284 9 C -0.085 4.085 10 C -0.268 4.268 11 C 0.098 3.902 12 C -0.469 4.469 13 H 0.108 0.892 14 C -0.136 4.136 15 N -0.440 5.440 16 Si 0.744 3.256 17 H -0.198 1.198 18 H -0.222 1.222 19 H -0.167 1.167 20 C -0.216 4.216 21 C -0.147 4.147 22 C -0.218 4.218 23 C -0.216 4.216 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.233 0.767 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.903 13.030 -10.776 17.605 hybrid contribution 0.350 0.711 0.499 0.936 sum -4.554 13.741 -10.277 17.753 Atomic orbital electron populations 1.21836 0.92353 1.03021 1.02367 1.20245 0.96874 0.95804 0.92387 1.21987 1.02041 0.93647 1.02414 1.20435 0.80550 0.84802 0.84145 1.90751 1.36495 1.24839 1.86112 1.43450 1.47251 1.35641 1.04953 1.17543 0.98138 0.92095 0.85429 1.20075 1.15502 0.97169 0.95631 1.20356 0.97588 0.94491 0.96041 1.21046 1.12709 0.94179 0.98893 1.17657 0.89518 0.93364 0.89705 1.19480 1.12270 0.90974 1.24216 0.89202 1.26134 0.98964 0.95608 0.92848 1.69656 1.30113 1.13803 1.30469 0.86269 0.78206 0.81157 0.80013 1.19798 1.22189 1.16664 1.21133 1.10124 0.91802 0.98501 1.22062 1.03284 1.00090 0.89243 1.23130 0.92441 1.02372 1.03879 1.22971 0.98283 1.03081 0.97231 0.92135 0.91408 0.91712 0.91542 0.91454 0.92016 0.76704 0.88712 0.88507 0.88193 0.90544 0.86340 0.86516 0.88314 0.88919 0.88880 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.21 37.16 0.31 -1.05 16 2 C -0.05 -0.60 0.73 -155.66 -0.11 -0.72 16 3 C -0.14 -1.41 6.97 37.16 0.26 -1.15 16 4 C 0.51 8.87 6.32 -10.99 -0.07 8.80 16 5 O -0.51 -11.23 13.10 5.55 0.07 -11.16 16 6 N -0.67 -11.29 5.11 -9.91 -0.05 -11.34 16 7 C 0.16 3.45 6.29 -83.76 -0.53 2.93 16 8 C -0.26 -5.40 9.97 -39.10 -0.39 -5.79 16 9 C -0.07 -1.44 10.02 -39.69 -0.40 -1.83 16 10 C -0.25 -6.16 6.99 -38.84 -0.27 -6.44 16 11 C 0.10 2.71 5.13 -106.85 -0.55 2.16 16 12 C -0.44 -12.59 9.60 -37.74 -0.36 -12.95 16 13 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 14 C 0.08 2.26 5.47 -17.35 -0.09 2.16 16 15 N -0.82 -22.67 13.93 55.55 0.77 -21.89 16 16 Si 0.92 21.90 24.40 -169.99 -4.15 17.75 16 17 H -0.27 -6.19 6.67 56.52 0.38 -5.82 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.24 -6.03 6.66 56.52 0.38 -5.65 16 20 C -0.19 -4.90 8.43 -38.69 -0.33 -5.23 16 21 C -0.13 -1.59 4.75 -90.62 -0.43 -2.02 16 22 C -0.18 -1.95 9.57 -26.69 -0.26 -2.20 16 23 C -0.18 -1.67 9.39 -26.69 -0.25 -1.92 16 24 H 0.06 0.52 7.47 -51.93 -0.39 0.13 16 25 H 0.07 0.53 7.29 -51.93 -0.38 0.15 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.73 6.97 -51.93 -0.36 0.36 16 28 H 0.07 0.53 7.07 -51.93 -0.37 0.16 16 29 H 0.06 0.54 7.68 -51.93 -0.40 0.14 16 30 H 0.40 5.15 7.68 -40.82 -0.31 4.84 16 31 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.10 2.46 4.39 -52.49 -0.23 2.23 16 34 H 0.28 7.15 8.30 -40.82 -0.34 6.82 16 35 H 0.12 3.12 6.23 -52.49 -0.33 2.80 16 36 H 0.12 1.73 7.47 -51.93 -0.39 1.34 16 37 H 0.10 0.97 5.85 -51.93 -0.30 0.67 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.73 7.07 -51.93 -0.37 0.37 16 LS Contribution 316.89 15.07 4.78 4.78 Total: -1.00 -31.24 316.89 -7.59 -38.84 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.55 Total: 8.28 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -3.47 Total: -25.25 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.72 Total: -33.23 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.15 Total: 17.75 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.24 -7.59 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456754099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.989 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds