Wall clock time and date at job start Mon Mar 30 2020 01:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47193 * 2 1 4 4 C 1.50698 * 109.47336 * 120.00371 * 2 1 3 5 5 O 1.21286 * 120.00305 * 119.99945 * 4 2 1 6 6 N 1.34779 * 119.99801 * 299.99648 * 4 2 1 7 7 C 1.39933 * 119.99945 * 184.41119 * 6 4 2 8 8 C 1.39298 * 119.94561 * 144.42455 * 7 6 4 9 9 C 1.38487 * 120.42643 * 179.72292 * 8 7 6 10 10 C 1.37687 * 120.32292 * 0.55237 * 9 8 7 11 11 C 1.40747 * 119.88104 * 359.72535 * 10 9 8 12 12 C 1.41411 * 120.20384 * 180.02562 * 11 10 9 13 13 H 1.08008 * 119.99630 * 148.83896 * 12 11 10 14 14 C 1.39929 * 120.00224 * 328.83700 * 12 11 10 15 15 N 1.30829 * 119.99783 * 167.80672 * 14 12 11 16 16 Si 1.86796 * 120.00204 * 347.81213 * 14 12 11 17 17 H 1.48499 * 109.47494 * 92.58803 * 16 14 12 18 18 H 1.48500 * 109.46939 * 212.59024 * 16 14 12 19 19 H 1.48499 * 109.46963 * 332.58510 * 16 14 12 20 20 C 1.38241 * 119.94669 * 324.69852 * 7 6 4 21 21 C 1.53001 * 109.46867 * 240.00313 * 2 1 3 22 22 C 1.53003 * 117.50316 * 128.74787 * 21 2 1 23 23 C 1.53002 * 117.50168 * 60.08343 * 21 2 1 24 24 H 1.09006 * 109.46969 * 300.00097 * 1 2 3 25 25 H 1.09000 * 109.47346 * 59.99779 * 1 2 3 26 26 H 1.08997 * 109.47563 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47402 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47560 * 299.99995 * 3 2 1 29 29 H 1.08998 * 109.47294 * 59.99730 * 3 2 1 30 30 H 0.96998 * 119.99681 * 4.68764 * 6 4 2 31 31 H 1.08000 * 119.78484 * 0.02562 * 8 7 6 32 32 H 1.07995 * 119.84103 * 180.28105 * 9 8 7 33 33 H 1.07992 * 120.05766 * 179.74830 * 10 9 8 34 34 H 0.97000 * 120.00139 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.16380 * 359.97438 * 20 7 6 36 36 H 1.08999 * 115.54920 * 274.41461 * 21 2 1 37 37 H 1.09004 * 117.49445 * 359.97438 * 22 21 2 38 38 H 1.08996 * 117.50087 * 145.01827 * 22 21 2 39 39 H 1.08995 * 117.49796 * 214.97963 * 23 21 2 40 40 H 1.08995 * 117.49910 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6966 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.2475 -0.8532 3.5955 8 6 2.5668 -0.0771 4.7074 9 6 3.0970 -0.6645 5.8439 10 6 3.3252 -2.0218 5.8830 11 6 3.0129 -2.8178 4.7650 12 6 3.2439 -4.2125 4.7979 13 1 2.6044 -4.8792 4.2383 14 6 4.3010 -4.7290 5.5555 15 7 4.3758 -6.0153 5.7824 16 14 5.6052 -3.5819 6.2429 17 1 5.2243 -3.1657 7.6165 18 1 6.9120 -4.2860 6.2835 19 1 5.7162 -2.3820 5.3750 20 6 2.4693 -2.2176 3.6155 21 6 2.0399 -0.7212 -1.2493 22 6 3.0763 0.0039 -2.1102 23 6 1.6373 -0.1483 -2.6097 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.0946 0.4969 2.5447 31 1 2.3951 0.9889 4.6846 32 1 3.3368 -0.0544 6.7021 33 1 3.7426 -2.4748 6.7700 34 1 5.1083 -6.3733 6.3079 35 1 2.2259 -2.8196 2.7525 36 1 2.1252 -1.8046 -1.1648 37 1 3.3944 0.9951 -1.7867 38 1 3.8430 -0.6024 -2.5924 39 1 1.4581 -0.8547 -3.4201 40 1 1.0094 0.7427 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456754099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:15 Heat of formation + Delta-G solvation = -16.821191 kcal Electronic energy + Delta-G solvation = -20930.631351 eV Core-core repulsion = 17902.739639 eV Total energy + Delta-G solvation = -3027.891712 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.76734 -39.73148 -38.42303 -36.22736 -35.15382 -33.92686 -32.17945 -30.22985 -28.38002 -27.16584 -25.59109 -23.96538 -23.08368 -22.70557 -21.92004 -19.86590 -19.48588 -18.21241 -17.69412 -17.32426 -16.59580 -16.36898 -16.27049 -15.54019 -15.39891 -14.94032 -14.67500 -14.39806 -14.01813 -13.71129 -13.63292 -13.41843 -13.18260 -13.04402 -12.85928 -12.65088 -12.47366 -12.46196 -11.99369 -11.80717 -11.75416 -11.66755 -11.29534 -11.24438 -10.91258 -10.82299 -10.46922 -9.54023 -8.89500 -8.88112 -6.56368 0.65221 0.78733 1.21897 1.39267 1.46295 1.70559 2.10558 2.14924 2.60381 2.94064 3.47601 3.54572 3.63680 3.95410 4.07343 4.13353 4.30898 4.32808 4.47491 4.51518 4.59303 4.72057 4.77506 4.85499 4.86869 4.93408 4.95912 5.00111 5.01373 5.04848 5.22697 5.28034 5.31342 5.36039 5.38395 5.61373 5.71253 5.77679 5.91062 6.22390 6.36119 6.59288 6.72445 6.78651 7.30344 8.20416 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025759 B = 0.004795 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.722198 B = 5837.461070 C = 6310.410125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.037 4.037 3 C -0.141 4.141 4 C 0.507 3.493 5 O -0.567 6.567 6 N -0.656 5.656 7 C 0.165 3.835 8 C -0.234 4.234 9 C -0.065 4.065 10 C -0.260 4.260 11 C 0.080 3.920 12 C -0.488 4.488 13 H 0.042 0.958 14 C 0.041 3.959 15 N -0.861 5.861 16 Si 0.976 3.024 17 H -0.246 1.246 18 H -0.281 1.281 19 H -0.257 1.257 20 C -0.223 4.223 21 C -0.161 4.161 22 C -0.186 4.186 23 C -0.147 4.147 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.423 0.577 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.101 0.899 34 H 0.293 0.707 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 19.590 -10.730 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.040 4.040 3 C -0.198 4.198 4 C 0.296 3.704 5 O -0.444 6.444 6 N -0.302 5.302 7 C 0.071 3.929 8 C -0.255 4.255 9 C -0.084 4.084 10 C -0.279 4.279 11 C 0.077 3.923 12 C -0.518 4.518 13 H 0.061 0.939 14 C -0.171 4.171 15 N -0.488 5.488 16 Si 0.799 3.201 17 H -0.171 1.171 18 H -0.208 1.208 19 H -0.181 1.181 20 C -0.245 4.245 21 C -0.180 4.180 22 C -0.223 4.223 23 C -0.183 4.183 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.262 0.738 31 H 0.165 0.835 32 H 0.161 0.839 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.563 18.653 -10.786 22.253 hybrid contribution 0.399 -0.868 0.352 1.018 sum -5.163 17.786 -10.434 21.257 Atomic orbital electron populations 1.21894 0.90228 1.02511 1.04789 1.20252 0.98303 0.96556 0.88862 1.22035 1.01282 0.91637 1.04889 1.21617 0.79236 0.84026 0.85545 1.90746 1.39130 1.27578 1.86953 1.43378 1.47282 1.35852 1.03675 1.17679 0.96859 0.90853 0.87465 1.20683 1.11498 0.99458 0.93872 1.20892 0.96061 0.93438 0.97964 1.21188 1.13023 0.95702 0.98023 1.17772 0.90563 0.92832 0.91147 1.19444 1.13946 0.91944 1.26462 0.93935 1.26888 1.00214 0.97090 0.92933 1.69694 1.31542 1.15178 1.32370 0.85371 0.76028 0.78611 0.80057 1.17087 1.20758 1.18091 1.21062 1.12096 0.93827 0.97468 1.21976 1.06351 0.98274 0.91401 1.23234 0.93111 1.02564 1.03413 1.23084 0.97188 1.03417 0.94657 0.90372 0.88299 0.93771 0.92870 0.88344 0.90216 0.73821 0.83506 0.83921 0.88107 0.89637 0.89435 0.90669 0.86813 0.89852 0.88352 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.21 71.98 0.59 -1.68 16 2 C -0.04 -0.81 0.73 -52.93 -0.04 -0.85 16 3 C -0.14 -2.17 6.97 71.98 0.50 -1.67 16 4 C 0.51 17.43 6.32 87.66 0.55 17.99 16 5 O -0.57 -26.69 13.10 -3.05 -0.04 -26.73 16 6 N -0.66 -20.79 5.11 -303.65 -1.55 -22.34 16 7 C 0.17 6.89 6.29 38.10 0.24 7.13 16 8 C -0.23 -8.53 9.97 22.58 0.23 -8.31 16 9 C -0.07 -2.56 10.02 22.20 0.22 -2.34 16 10 C -0.26 -12.64 6.99 22.75 0.16 -12.48 16 11 C 0.08 4.47 5.13 -21.31 -0.11 4.36 16 12 C -0.49 -30.37 9.60 23.46 0.23 -30.15 16 13 H 0.04 2.90 8.06 -2.91 -0.02 2.87 16 14 C 0.04 2.40 5.47 85.25 0.47 2.87 16 15 N -0.86 -50.89 13.93 21.82 0.30 -50.59 16 16 Si 0.98 45.96 24.40 68.60 1.67 47.63 16 17 H -0.25 -10.47 6.67 99.48 0.66 -9.81 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.26 -12.50 6.66 99.48 0.66 -11.84 16 20 C -0.22 -11.78 8.43 22.85 0.19 -11.59 16 21 C -0.16 -3.94 4.75 -10.79 -0.05 -4.00 16 22 C -0.19 -3.74 9.57 30.62 0.29 -3.44 16 23 C -0.15 -2.33 9.39 30.62 0.29 -2.05 16 24 H 0.08 1.02 7.47 -2.38 -0.02 1.00 16 25 H 0.10 1.07 7.29 -2.39 -0.02 1.05 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.98 6.97 -2.39 -0.02 0.97 16 28 H 0.10 0.95 7.07 -2.39 -0.02 0.94 16 29 H 0.08 0.95 7.68 -2.39 -0.02 0.94 16 30 H 0.42 9.12 7.68 -92.71 -0.71 8.41 16 31 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.10 4.83 4.39 -2.91 -0.01 4.82 16 34 H 0.29 15.50 8.30 -92.71 -0.77 14.73 16 35 H 0.09 5.09 6.23 -2.91 -0.02 5.07 16 36 H 0.07 2.45 7.47 -2.39 -0.02 2.43 16 37 H 0.11 1.92 5.85 -2.38 -0.01 1.91 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.12 1.26 7.07 -2.39 -0.02 1.25 16 Total: -1.00 -77.22 316.89 4.40 -72.82 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.26 Total: 25.42 kcal Atomic # 6 Polarization: -49.97 SS G_CDS: 3.76 Total: -46.21 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.25 Total: -72.93 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.04 Total: -26.73 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.67 Total: 47.63 kcal Total: -77.22 4.40 -72.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456754099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.000 kcal (2) G-P(sol) polarization free energy of solvation -77.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds