Wall clock time and date at job start Mon Mar 30 2020 01:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 119.99823 * 2 1 4 4 C 1.52997 * 109.47076 * 124.99654 * 3 2 1 5 5 C 1.53008 * 109.46818 * 60.00274 * 4 3 2 6 6 C 1.53000 * 109.47500 * 300.00572 * 4 3 2 7 7 C 1.50697 * 109.47371 * 180.02562 * 4 3 2 8 8 O 1.21293 * 119.99786 * 359.97438 * 7 4 3 9 9 N 1.34778 * 120.00458 * 180.02562 * 7 4 3 10 10 C 1.39931 * 120.00304 * 174.40271 * 9 7 4 11 11 C 1.39287 * 119.94963 * 145.35635 * 10 9 7 12 12 C 1.38489 * 120.43035 * 179.97438 * 11 10 9 13 13 C 1.37681 * 120.31997 * 0.27660 * 12 11 10 14 14 C 1.40737 * 119.88724 * 359.45298 * 13 12 11 15 15 C 1.41413 * 120.21418 * 180.27604 * 14 13 12 16 16 H 1.07997 * 119.99784 * 214.58623 * 15 14 13 17 17 C 1.39931 * 119.99493 * 34.58557 * 15 14 13 18 18 N 1.30831 * 120.00185 * 5.45764 * 17 15 14 19 19 Si 1.86805 * 119.99697 * 185.45575 * 17 15 14 20 20 H 1.48498 * 109.46974 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47151 * 120.00291 * 19 17 15 22 22 H 1.48505 * 109.46831 * 240.00507 * 19 17 15 23 23 C 1.38248 * 119.94935 * 325.33308 * 10 9 7 24 24 H 1.07996 * 119.99944 * 0.02562 * 1 2 3 25 25 H 1.07994 * 119.99431 * 179.97438 * 1 2 3 26 26 H 1.07990 * 120.00138 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47160 * 5.00369 * 3 2 1 28 28 H 1.08997 * 109.47147 * 244.99911 * 3 2 1 29 29 H 1.09002 * 109.46902 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.46726 * 299.99385 * 5 4 3 31 31 H 1.08997 * 109.47275 * 59.99822 * 5 4 3 32 32 H 1.09008 * 109.46564 * 299.99436 * 6 4 3 33 33 H 1.08993 * 109.47195 * 59.99501 * 6 4 3 34 34 H 1.09002 * 109.47426 * 179.97438 * 6 4 3 35 35 H 0.97003 * 119.99385 * 354.40525 * 9 7 4 36 36 H 1.08001 * 119.78710 * 359.97438 * 11 10 9 37 37 H 1.07999 * 119.83754 * 179.97438 * 12 11 10 38 38 H 1.08004 * 120.05560 * 179.70118 * 13 12 11 39 39 H 0.97000 * 119.99755 * 179.97438 * 18 17 15 40 40 H 1.08006 * 120.15293 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 4.0246 0.1730 1.0559 6 6 2.2521 1.1962 2.4890 7 6 3.7880 2.6385 1.1821 8 8 3.5695 3.4649 0.3216 9 7 4.7050 2.8873 2.1380 10 6 5.4870 4.0459 2.0729 11 6 5.8632 4.6977 3.2449 12 6 6.6375 5.8447 3.1921 13 6 7.0393 6.3568 1.9789 14 6 6.6716 5.7059 0.7865 15 6 7.0854 6.2226 -0.4631 16 1 6.4381 6.1380 -1.3235 17 6 8.3335 6.8434 -0.5848 18 7 9.1615 6.8517 0.4282 19 14 8.8175 7.6602 -2.1935 20 1 7.7129 7.5134 -3.1751 21 1 9.0804 9.1025 -1.9569 22 1 10.0437 7.0145 -2.7272 23 6 5.8854 4.5416 0.8454 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 4.7170 0.1932 1.8975 30 1 3.4796 -0.7710 1.0560 31 1 4.5824 0.2705 0.1246 32 1 1.5471 2.0228 2.5786 33 1 1.7071 0.2523 2.4890 34 1 2.9442 1.2157 3.3308 35 1 4.8228 2.2631 2.8711 36 1 5.5491 4.3060 4.2012 37 1 6.9233 6.3426 4.1068 38 1 7.6389 7.2543 1.9425 39 1 10.0269 7.2817 0.3437 40 1 5.5948 4.0364 -0.0640 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456755101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:25 Heat of formation + Delta-G solvation = -30.493924 kcal Electronic energy + Delta-G solvation = -20642.314347 eV Core-core repulsion = 17613.829741 eV Total energy + Delta-G solvation = -3028.484606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.64047 -39.32730 -37.55594 -36.20359 -34.89827 -33.59087 -31.75371 -29.92083 -28.27954 -27.58278 -27.25138 -24.79100 -22.91390 -22.42007 -20.84276 -19.83666 -19.46311 -17.85126 -17.39850 -16.98755 -16.51524 -16.32882 -15.91584 -15.63862 -15.16366 -14.79270 -14.65542 -14.31444 -13.99190 -13.74069 -13.55064 -13.32729 -12.99598 -12.95081 -12.87844 -12.84876 -12.62407 -12.20066 -12.10297 -11.96336 -11.83744 -11.80563 -11.47649 -11.19494 -10.86698 -10.52220 -10.16721 -9.34102 -8.76049 -8.54476 -6.42338 0.83961 0.96836 1.35065 1.42728 1.44145 1.50385 1.79701 2.20884 2.24710 2.77013 3.54969 3.67574 3.75261 3.88397 4.19827 4.27148 4.34602 4.44447 4.58280 4.72415 4.77655 4.78094 4.89702 4.94851 5.01480 5.05990 5.09855 5.11348 5.15083 5.20333 5.29464 5.32107 5.33305 5.75010 5.77905 5.82625 5.95173 6.03423 6.10580 6.34060 6.62710 6.67508 6.93256 6.98864 7.31919 8.40324 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024334 B = 0.004329 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.390620 B = 6466.824466 C = 7260.787488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.150 4.150 3 C -0.072 4.072 4 C -0.064 4.064 5 C -0.140 4.140 6 C -0.136 4.136 7 C 0.507 3.493 8 O -0.571 6.571 9 N -0.655 5.655 10 C 0.152 3.848 11 C -0.239 4.239 12 C -0.095 4.095 13 C -0.183 4.183 14 C 0.089 3.911 15 C -0.510 4.510 16 H 0.059 0.941 17 C 0.035 3.965 18 N -0.838 5.838 19 Si 0.984 3.016 20 H -0.267 1.267 21 H -0.259 1.259 22 H -0.262 1.262 23 C -0.227 4.227 24 H 0.088 0.912 25 H 0.118 0.882 26 H 0.131 0.869 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.419 0.581 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.286 0.714 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 -14.277 4.867 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.168 4.168 3 C -0.110 4.110 4 C -0.068 4.068 5 C -0.197 4.197 6 C -0.193 4.193 7 C 0.296 3.704 8 O -0.449 6.449 9 N -0.301 5.301 10 C 0.059 3.941 11 C -0.260 4.260 12 C -0.114 4.114 13 C -0.203 4.203 14 C 0.087 3.913 15 C -0.540 4.540 16 H 0.078 0.922 17 C -0.178 4.178 18 N -0.465 5.465 19 Si 0.805 3.195 20 H -0.191 1.191 21 H -0.184 1.184 22 H -0.187 1.187 23 C -0.249 4.249 24 H 0.106 0.894 25 H 0.136 0.864 26 H 0.149 0.851 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.258 0.742 36 H 0.153 0.847 37 H 0.144 0.856 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.221 -13.670 4.323 17.608 hybrid contribution 0.558 0.587 -0.684 1.060 sum -9.663 -13.084 3.639 16.667 Atomic orbital electron populations 1.24020 0.95765 1.02473 1.00390 1.22890 0.96068 0.97397 1.00430 1.20552 0.97181 0.96656 0.96589 1.20767 0.96064 0.90769 0.99169 1.21953 0.98161 0.97164 1.02470 1.21896 1.00062 1.03682 0.93645 1.21640 0.79027 0.89504 0.80256 1.90727 1.66166 1.49372 1.38660 1.43390 1.36201 1.22462 1.28044 1.17574 0.93850 0.88808 0.93902 1.20562 1.09342 1.00038 0.96016 1.20883 0.97428 0.96014 0.97026 1.21312 1.05175 1.01496 0.92340 1.17827 0.89445 0.89745 0.94294 1.19705 1.02654 1.35719 0.95965 0.92240 1.26638 0.95309 0.93971 1.01871 1.69830 1.08032 1.35609 1.33043 0.85143 0.78625 0.78615 0.77154 1.19127 1.18354 1.18696 1.21032 1.08324 0.99907 0.95597 0.89384 0.86364 0.85095 0.92704 0.92513 0.90868 0.88061 0.93614 0.93265 0.88690 0.90599 0.74243 0.84717 0.85622 0.88042 0.90313 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.91 14.32 67.77 0.97 -1.94 16 2 C -0.15 -2.56 7.65 25.64 0.20 -2.36 16 3 C -0.07 -1.79 4.02 29.85 0.12 -1.67 16 4 C -0.06 -1.53 0.65 -52.93 -0.03 -1.56 16 5 C -0.14 -2.61 8.12 71.98 0.58 -2.02 16 6 C -0.14 -2.37 8.12 71.98 0.58 -1.78 16 7 C 0.51 18.16 6.20 87.66 0.54 18.71 16 8 O -0.57 -27.06 13.77 -3.07 -0.04 -27.11 16 9 N -0.66 -22.74 5.11 -303.65 -1.55 -24.29 16 10 C 0.15 6.91 6.25 38.10 0.24 7.14 16 11 C -0.24 -10.02 9.97 22.58 0.23 -9.79 16 12 C -0.09 -4.35 10.02 22.20 0.22 -4.12 16 13 C -0.18 -10.02 8.62 22.75 0.20 -9.82 16 14 C 0.09 5.25 5.50 -21.31 -0.12 5.14 16 15 C -0.51 -30.38 9.04 23.46 0.21 -30.17 16 16 H 0.06 3.58 7.85 -2.91 -0.02 3.56 16 17 C 0.03 1.88 5.31 85.25 0.45 2.33 16 18 N -0.84 -45.94 10.98 21.82 0.24 -45.70 16 19 Si 0.98 41.42 29.56 68.60 2.03 43.45 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 23 C -0.23 -12.51 8.39 22.85 0.19 -12.32 16 24 H 0.09 1.48 7.84 -2.91 -0.02 1.46 16 25 H 0.12 1.30 8.06 -2.91 -0.02 1.28 16 26 H 0.13 1.68 6.80 -2.92 -0.02 1.66 16 27 H 0.05 1.55 7.75 -2.38 -0.02 1.53 16 28 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 29 H 0.07 1.19 7.70 -2.39 -0.02 1.17 16 30 H 0.10 1.25 6.53 -2.39 -0.02 1.23 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.09 1.21 7.22 -2.39 -0.02 1.19 16 34 H 0.08 1.08 7.45 -2.39 -0.02 1.07 16 35 H 0.42 10.58 7.69 -92.71 -0.71 9.87 16 36 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.10 5.77 6.49 -2.91 -0.02 5.75 16 39 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 40 H 0.08 4.79 6.51 -2.91 -0.02 4.77 16 Total: -1.00 -72.61 329.58 5.58 -67.04 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.32 Total: 30.86 kcal Atomic # 6 Polarization: -48.83 SS G_CDS: 4.59 Total: -44.24 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -1.31 Total: -69.99 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.04 Total: -27.11 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -72.61 5.58 -67.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456755101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.543 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds