Wall clock time and date at job start Mon Mar 30 2020 01:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00000 * 2 1 4 4 C 1.52993 * 109.46901 * 120.00204 * 3 2 1 5 5 C 1.52999 * 109.46772 * 240.00058 * 3 2 1 6 6 C 1.53002 * 109.47380 * 300.00004 * 5 3 2 7 7 C 1.50700 * 109.47099 * 0.02562 * 3 2 1 8 8 O 1.21286 * 119.99659 * 239.99801 * 7 3 2 9 9 N 1.34771 * 120.00120 * 60.00366 * 7 3 2 10 10 C 1.39932 * 119.99984 * 174.88618 * 9 7 3 11 11 C 1.39299 * 119.94782 * 146.37098 * 10 9 7 12 12 C 1.38485 * 120.42567 * 179.97438 * 11 10 9 13 13 C 1.37681 * 120.32690 * 0.02562 * 12 11 10 14 14 C 1.40742 * 119.88324 * 359.97438 * 13 12 11 15 15 C 1.41409 * 120.21262 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00652 * 151.73782 * 15 14 13 17 17 C 1.39939 * 119.99929 * 331.74531 * 15 14 13 18 18 N 1.30833 * 119.99892 * 349.00294 * 17 15 14 19 19 Si 1.86797 * 120.00080 * 169.00531 * 17 15 14 20 20 H 1.48504 * 109.46977 * 59.99849 * 19 17 15 21 21 H 1.48503 * 109.47048 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47323 * 299.99670 * 19 17 15 23 23 C 1.38241 * 119.94830 * 326.09533 * 10 9 7 24 24 H 1.08007 * 120.00259 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00058 * 179.72658 * 1 2 3 26 26 H 1.08002 * 119.99809 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47661 * 59.99670 * 4 3 2 28 28 H 1.09000 * 109.47088 * 180.02562 * 4 3 2 29 29 H 1.09001 * 109.47406 * 299.99454 * 4 3 2 30 30 H 1.08997 * 109.47696 * 60.00043 * 5 3 2 31 31 H 1.09002 * 109.47102 * 179.97438 * 5 3 2 32 32 H 1.09002 * 109.47057 * 59.99906 * 6 5 3 33 33 H 1.08995 * 109.47401 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.46942 * 300.00332 * 6 5 3 35 35 H 0.96999 * 119.99866 * 354.87844 * 9 7 3 36 36 H 1.07988 * 119.78482 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.84014 * 180.02562 * 12 11 10 38 38 H 1.08003 * 120.06460 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00360 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.15988 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 6 2.9431 1.3861 -1.2493 6 6 3.9373 0.2231 -1.2493 7 6 1.0842 2.4505 0.0006 8 8 1.0890 3.2529 -0.9088 9 7 0.2032 2.5833 1.0118 10 6 -0.6332 3.7038 1.0685 11 6 -1.9213 3.5846 1.5853 12 6 -2.7572 4.6870 1.6465 13 6 -2.3238 5.9139 1.1962 14 6 -1.0249 6.0495 0.6715 15 6 -0.5725 7.3063 0.2077 16 1 0.4801 7.5459 0.2370 17 6 -1.4888 8.2400 -0.2893 18 7 -2.7244 7.8813 -0.5270 19 14 -0.9479 9.9983 -0.6136 20 1 0.1477 10.0022 -1.6160 21 1 -2.0971 10.7817 -1.1339 22 1 -0.4642 10.6085 0.6509 23 6 -0.1779 4.9284 0.6167 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0045 26 1 1.8500 -0.9353 -0.0004 27 1 3.6514 0.5576 1.2492 28 1 3.4878 2.3302 1.2494 29 1 2.3165 1.3284 2.1392 30 1 2.3165 1.3283 -2.1393 31 1 3.4878 2.3302 -1.2496 32 1 3.3923 -0.7208 -1.2493 33 1 4.5642 0.2811 -2.1390 34 1 4.5640 0.2809 -0.3593 35 1 0.1488 1.9022 1.7003 36 1 -2.2700 2.6265 1.9412 37 1 -3.7539 4.5840 2.0494 38 1 -2.9794 6.7707 1.2456 39 1 -3.3595 8.5282 -0.8718 40 1 0.8223 5.0228 0.2204 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456756630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:30 Heat of formation + Delta-G solvation = -1.884743 kcal Electronic energy + Delta-G solvation = -20962.059825 eV Core-core repulsion = 17934.815806 eV Total energy + Delta-G solvation = -3027.244019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43849 -37.60876 -36.15100 -34.53611 -33.09719 -31.91546 -29.79061 -29.59327 -27.90883 -25.31642 -25.21592 -22.38041 -21.72931 -20.93852 -20.05210 -18.51115 -17.51149 -16.35303 -15.93989 -15.42486 -15.29471 -14.66126 -14.47200 -14.30212 -13.61086 -13.49088 -13.08188 -12.84847 -12.60202 -12.28277 -12.07541 -12.02726 -11.80783 -11.59400 -11.49028 -11.24190 -11.08614 -10.87653 -10.63330 -10.49911 -10.42615 -10.07291 -9.70831 -9.46040 -9.32556 -9.06445 -8.80577 -7.39115 -6.85475 -6.63277 -4.31851 2.20056 2.63310 2.87721 3.11347 3.15024 3.22797 3.39996 3.63253 4.00642 4.65909 4.68528 4.72232 4.95681 5.09183 5.23999 5.32162 5.47749 5.52917 5.67760 5.74592 5.83154 5.90292 5.93604 6.05885 6.19701 6.26411 6.37483 6.40630 6.54629 6.65608 6.80763 7.04478 7.07858 7.10735 7.30248 7.59054 7.75775 8.00235 8.11838 8.21035 8.30540 8.66962 8.77563 8.97931 9.01715 10.30069 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.004780 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.327625 B = 5856.272834 C = 6628.662814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.051 4.051 4 C -0.139 4.139 5 C -0.097 4.097 6 C -0.153 4.153 7 C 0.514 3.486 8 O -0.510 6.510 9 N -0.668 5.668 10 C 0.148 3.852 11 C -0.259 4.259 12 C -0.094 4.094 13 C -0.167 4.167 14 C 0.119 3.881 15 C -0.458 4.458 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.802 5.802 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.208 4.208 24 H 0.114 0.886 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.656 -12.867 2.796 15.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.165 4.165 3 C -0.054 4.054 4 C -0.196 4.196 5 C -0.135 4.135 6 C -0.210 4.210 7 C 0.300 3.700 8 O -0.384 6.384 9 N -0.313 5.313 10 C 0.056 3.944 11 C -0.280 4.280 12 C -0.113 4.113 13 C -0.187 4.187 14 C 0.116 3.884 15 C -0.489 4.489 16 H 0.093 0.907 17 C -0.143 4.143 18 N -0.428 5.428 19 Si 0.736 3.264 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.229 4.229 24 H 0.131 0.869 25 H 0.119 0.881 26 H 0.137 0.863 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.233 0.767 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.482 -12.188 2.023 14.443 hybrid contribution -0.018 0.320 0.076 0.329 sum 7.464 -11.868 2.099 14.176 Atomic orbital electron populations 1.24456 0.96340 1.03417 0.99483 1.22715 0.95639 0.96854 1.01320 1.20018 0.95135 0.91861 0.98400 1.21866 0.99393 1.02910 0.95422 1.21323 0.96883 0.99293 0.96002 1.21887 0.99003 0.98349 1.01749 1.20390 0.81305 0.86331 0.81931 1.90767 1.69442 1.43360 1.34815 1.43713 1.37458 1.23497 1.26590 1.17467 0.89718 0.85532 1.01634 1.20056 0.93738 0.98117 1.16109 1.20480 0.97147 0.93454 1.00246 1.21402 0.98292 0.96524 1.02499 1.17504 0.91285 0.91802 0.87830 1.19509 0.94825 0.98080 1.36441 0.90651 1.25875 0.94435 1.00608 0.93347 1.69794 1.04284 1.35830 1.32863 0.86320 0.79030 0.81460 0.79585 1.19056 1.20373 1.18924 1.20974 1.01321 0.90620 1.09999 0.86853 0.88073 0.86335 0.91117 0.91690 0.92096 0.91131 0.90913 0.92609 0.92627 0.92416 0.76657 0.89319 0.89055 0.86098 0.90993 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.45 13.08 29.01 0.38 -2.07 16 2 C -0.15 -1.66 7.98 -36.03 -0.29 -1.95 16 3 C -0.05 -0.67 0.63 -156.82 -0.10 -0.77 16 4 C -0.14 -1.50 8.00 37.15 0.30 -1.20 16 5 C -0.10 -1.25 4.27 -26.73 -0.11 -1.36 16 6 C -0.15 -1.42 9.30 37.16 0.35 -1.07 16 7 C 0.51 9.42 5.07 -10.99 -0.06 9.36 16 8 O -0.51 -11.81 13.70 5.55 0.08 -11.74 16 9 N -0.67 -12.11 3.61 -9.91 -0.04 -12.15 16 10 C 0.15 3.39 6.26 -83.76 -0.52 2.86 16 11 C -0.26 -5.75 9.97 -39.10 -0.39 -6.14 16 12 C -0.09 -2.22 10.01 -39.69 -0.40 -2.62 16 13 C -0.17 -4.45 8.66 -38.84 -0.34 -4.78 16 14 C 0.12 3.31 5.55 -106.85 -0.59 2.72 16 15 C -0.46 -12.77 9.06 -37.74 -0.34 -13.11 16 16 H 0.08 2.04 7.87 -52.49 -0.41 1.62 16 17 C 0.07 1.93 5.25 -17.34 -0.09 1.84 16 18 N -0.80 -21.49 10.82 55.55 0.60 -20.89 16 19 Si 0.91 19.48 29.57 -169.99 -5.03 14.45 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.21 -5.46 8.39 -38.68 -0.32 -5.78 16 24 H 0.11 1.74 5.16 -52.48 -0.27 1.47 16 25 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 26 H 0.12 1.05 7.00 -52.49 -0.37 0.68 16 27 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 30 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 31 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.05 0.47 6.62 -51.93 -0.34 0.12 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 35 H 0.40 5.85 7.48 -40.82 -0.31 5.55 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 38 H 0.12 3.30 6.18 -52.48 -0.32 2.97 16 39 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 40 H 0.11 2.85 6.44 -52.49 -0.34 2.51 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -30.75 322.76 -7.57 -38.33 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -5.52 Total: 11.20 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.53 Total: -24.07 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.57 Total: -33.04 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.75 -7.57 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456756630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.442 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds