Wall clock time and date at job start Mon Mar 30 2020 01:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 C 1.50705 * 109.46982 * 60.00318 * 3 2 1 5 5 C 1.38235 * 120.00132 * 269.72491 * 4 3 2 6 6 C 1.38231 * 119.99848 * 179.76401 * 5 4 3 7 7 C 1.38238 * 120.00028 * 0.50823 * 6 5 4 8 8 C 1.38235 * 119.99925 * 359.74619 * 7 6 5 9 9 C 1.38229 * 119.99992 * 359.97438 * 8 7 6 10 10 N 1.46499 * 109.46752 * 240.00473 * 2 1 3 11 11 C 1.34778 * 120.00016 * 183.90536 * 10 2 1 12 12 O 1.21686 * 119.99963 * 5.20572 * 11 10 2 13 13 C 1.46375 * 120.00106 * 185.20372 * 11 10 2 14 14 H 1.07994 * 119.99918 * 354.84681 * 13 11 10 15 15 C 1.40054 * 119.99783 * 174.85178 * 13 11 10 16 16 N 1.30668 * 119.99916 * 5.16258 * 15 13 11 17 17 Si 1.86801 * 119.99683 * 185.16615 * 15 13 11 18 18 H 1.48503 * 109.47007 * 94.99789 * 17 15 13 19 19 H 1.48505 * 109.47051 * 214.99543 * 17 15 13 20 20 H 1.48503 * 109.46959 * 334.99487 * 17 15 13 21 21 C 1.52996 * 109.47240 * 120.00491 * 2 1 3 22 22 C 1.53000 * 117.52070 * 348.87522 * 21 2 1 23 23 C 1.52997 * 60.00056 * 107.48179 * 22 21 2 24 24 H 1.09007 * 109.46662 * 299.99519 * 1 2 3 25 25 H 1.08996 * 109.47524 * 59.99347 * 1 2 3 26 26 H 1.08996 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47076 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47481 * 300.00680 * 3 2 1 29 29 H 1.07995 * 120.00039 * 0.02562 * 5 4 3 30 30 H 1.07998 * 119.99979 * 180.23179 * 6 5 4 31 31 H 1.08004 * 120.00255 * 179.71984 * 7 6 5 32 32 H 1.08001 * 120.00040 * 179.97438 * 8 7 6 33 33 H 1.08006 * 119.99811 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00059 * 3.91136 * 10 2 1 35 35 H 0.96999 * 119.99606 * 179.97438 * 16 15 13 36 36 H 1.09001 * 115.54852 * 203.17453 * 21 2 1 37 37 H 1.08998 * 117.49778 * 214.97478 * 22 21 2 38 38 H 1.08997 * 117.49246 * 359.97438 * 22 21 2 39 39 H 1.09003 * 117.50077 * 252.51503 * 23 22 21 40 40 H 1.09001 * 117.51824 * 107.47948 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5377 2.1529 1.2305 5 6 0.3325 2.8290 1.1948 6 6 -0.1305 3.4765 2.3249 7 6 0.6167 3.4566 3.4878 8 6 1.8243 2.7849 3.5221 9 6 2.2846 2.1326 2.3936 10 7 2.0183 -0.6905 -1.1962 11 6 3.3408 -0.8830 -1.3707 12 8 4.1223 -0.5689 -0.4924 13 6 3.8370 -1.4699 -2.6164 14 1 3.1401 -1.8251 -3.3610 15 6 5.2154 -1.5707 -2.8426 16 7 6.0581 -1.2349 -1.9021 17 14 5.8492 -2.1852 -4.4889 18 1 6.1485 -1.0263 -5.3679 19 1 7.0864 -2.9790 -4.2780 20 1 4.8165 -3.0388 -5.1295 21 6 2.0400 -0.7213 1.2491 22 6 1.0205 -1.0499 2.3416 23 6 1.5881 -2.1672 1.4640 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 -0.2492 2.8479 0.2851 30 1 -1.0738 4.0016 2.2981 31 1 0.2571 3.9663 4.3695 32 1 2.4083 2.7697 4.4305 33 1 3.2284 1.6081 2.4203 34 1 1.3897 -1.0091 -1.8628 35 1 7.0128 -1.3051 -2.0587 36 1 3.0491 -0.4571 1.5655 37 1 1.3588 -1.0017 3.3766 38 1 -0.0139 -0.7517 2.1706 39 1 0.9272 -2.6044 0.7156 40 1 2.3001 -2.8543 1.9213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457058878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:17 Heat of formation + Delta-G solvation = 7.283509 kcal Electronic energy + Delta-G solvation = -21548.033742 eV Core-core repulsion = 18521.187288 eV Total energy + Delta-G solvation = -3026.846453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.76331 -38.13663 -36.12494 -33.70640 -32.42802 -31.66468 -30.66837 -29.00482 -26.63103 -25.93864 -23.15831 -22.18238 -21.71832 -20.93985 -20.20723 -17.98685 -17.14528 -16.36105 -15.66714 -15.32769 -14.90480 -14.74453 -14.55644 -14.17467 -13.58145 -13.13290 -12.85888 -12.61963 -12.23015 -12.14750 -12.01526 -11.95504 -11.62977 -11.13768 -11.11824 -10.93119 -10.78287 -10.67329 -10.58443 -10.40320 -10.21409 -10.02991 -9.67351 -9.41362 -8.82496 -8.64231 -8.41832 -7.44593 -7.38631 -6.14903 -4.59542 1.63660 1.67095 3.14676 3.22403 3.25350 4.04842 4.12074 4.39063 4.63439 4.92866 5.09202 5.16393 5.23254 5.27686 5.39963 5.48731 5.55086 5.67876 5.71586 5.77757 5.82872 5.90258 5.99458 6.06937 6.12546 6.24501 6.31455 6.36908 6.40472 6.45887 6.63695 6.69239 6.70900 6.75996 6.85121 7.07652 7.12411 7.30592 7.46587 7.97619 8.18517 8.38310 9.06705 9.61414 10.64012 10.85091 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026804 B = 0.005068 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.360861 B = 5523.726236 C = 5721.877510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.225 3.775 3 C -0.091 4.091 4 C -0.053 4.053 5 C -0.123 4.123 6 C -0.125 4.125 7 C -0.135 4.135 8 C -0.121 4.121 9 C -0.104 4.104 10 N -0.758 5.758 11 C 0.561 3.439 12 O -0.572 6.572 13 C -0.548 4.548 14 H 0.064 0.936 15 C 0.090 3.910 16 N -0.768 5.768 17 Si 0.903 3.097 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.119 4.119 22 C -0.194 4.194 23 C -0.171 4.171 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.378 0.622 35 H 0.266 0.734 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.236 5.439 6.600 14.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.138 3.862 3 C -0.129 4.129 4 C -0.054 4.054 5 C -0.141 4.141 6 C -0.143 4.143 7 C -0.154 4.154 8 C -0.139 4.139 9 C -0.122 4.122 10 N -0.412 5.412 11 C 0.365 3.635 12 O -0.454 6.454 13 C -0.585 4.585 14 H 0.083 0.917 15 C -0.129 4.129 16 N -0.397 5.397 17 Si 0.728 3.272 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.138 4.138 22 C -0.232 4.232 23 C -0.208 4.208 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.210 0.790 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.447 5.692 7.287 13.952 hybrid contribution 0.039 -0.524 -1.149 1.263 sum -10.408 5.168 6.139 13.142 Atomic orbital electron populations 1.22267 0.95625 1.01733 1.01991 1.19177 0.91274 0.89868 0.85898 1.21083 1.03563 0.94575 0.93693 1.19959 0.93935 0.95805 0.95686 1.21053 0.96235 0.98522 0.98268 1.21025 0.99643 1.00254 0.93427 1.21004 0.95610 1.00867 0.97879 1.21098 0.96390 0.98201 0.98244 1.21164 1.00108 0.98500 0.92475 1.46320 1.08826 1.64026 1.22038 1.18074 0.79105 0.78446 0.87881 1.90548 1.54847 1.55641 1.44360 1.20910 0.91838 1.43046 1.02691 0.91728 1.25646 0.96842 0.93375 0.97040 1.70014 1.02531 1.35606 1.31510 0.86441 0.78721 0.79193 0.82873 1.19903 1.20547 1.18993 1.22547 0.98856 0.96856 0.95531 1.23091 0.99124 1.05053 0.95908 1.22698 1.03403 0.92308 1.02405 0.91129 0.92701 0.92564 0.88671 0.91733 0.86537 0.86796 0.86899 0.86664 0.85937 0.79018 0.92291 0.86943 0.90042 0.89191 0.89608 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 6.63 37.16 0.25 -2.07 16 2 C 0.23 4.10 0.65 -131.82 -0.09 4.02 16 3 C -0.09 -1.67 4.44 -27.88 -0.12 -1.79 16 4 C -0.05 -0.84 4.20 -104.62 -0.44 -1.28 16 5 C -0.12 -1.67 7.90 -39.59 -0.31 -1.98 16 6 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 7 C -0.14 -1.64 10.05 -39.58 -0.40 -2.04 16 8 C -0.12 -1.61 10.05 -39.59 -0.40 -2.01 16 9 C -0.10 -1.62 8.69 -39.58 -0.34 -1.97 16 10 N -0.76 -16.18 5.02 -49.00 -0.25 -16.42 16 11 C 0.56 15.10 7.15 -12.99 -0.09 15.01 16 12 O -0.57 -17.03 11.86 5.20 0.06 -16.97 16 13 C -0.55 -15.14 9.54 -35.63 -0.34 -15.48 16 14 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 15 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 16 N -0.77 -22.55 11.85 55.55 0.66 -21.90 16 17 Si 0.90 20.06 29.56 -169.99 -5.03 15.04 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 21 C -0.12 -2.24 2.58 -90.62 -0.23 -2.48 16 22 C -0.19 -3.04 9.61 -26.73 -0.26 -3.30 16 23 C -0.17 -3.04 9.80 -26.73 -0.26 -3.30 16 24 H 0.07 0.97 4.90 -51.92 -0.25 0.72 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.79 7.02 -51.93 -0.36 0.43 16 27 H 0.09 2.14 6.58 -51.93 -0.34 1.80 16 28 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.12 1.43 8.04 -52.49 -0.42 1.01 16 30 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.11 1.10 8.06 -52.48 -0.42 0.67 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.12 2.04 7.51 -52.48 -0.39 1.65 16 34 H 0.38 7.30 8.46 -40.82 -0.35 6.95 16 35 H 0.27 7.16 8.29 -40.82 -0.34 6.83 16 36 H 0.11 2.51 6.61 -51.93 -0.34 2.17 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.30 5.87 -51.93 -0.30 0.99 16 39 H 0.09 1.49 7.45 -51.93 -0.39 1.10 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -31.31 321.69 -8.90 -40.20 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -5.66 Total: 13.41 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -3.53 Total: -18.21 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.41 Total: -38.32 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.06 Total: -16.97 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.31 -8.90 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457058878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.485 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds