Wall clock time and date at job start Mon Mar 30 2020 01:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47070 * 2 1 4 4 C 1.50705 * 109.46982 * 60.00318 * 3 2 1 5 5 C 1.38235 * 120.00132 * 269.72491 * 4 3 2 6 6 C 1.38231 * 119.99848 * 179.76401 * 5 4 3 7 7 C 1.38238 * 120.00028 * 0.50823 * 6 5 4 8 8 C 1.38235 * 119.99925 * 359.74619 * 7 6 5 9 9 C 1.38229 * 119.99992 * 359.97438 * 8 7 6 10 10 N 1.46499 * 109.46752 * 240.00473 * 2 1 3 11 11 C 1.34778 * 120.00016 * 183.90536 * 10 2 1 12 12 O 1.21686 * 119.99963 * 5.20572 * 11 10 2 13 13 C 1.46375 * 120.00106 * 185.20372 * 11 10 2 14 14 H 1.07994 * 119.99918 * 354.84681 * 13 11 10 15 15 C 1.40054 * 119.99783 * 174.85178 * 13 11 10 16 16 N 1.30668 * 119.99916 * 5.16258 * 15 13 11 17 17 Si 1.86801 * 119.99683 * 185.16615 * 15 13 11 18 18 H 1.48503 * 109.47007 * 94.99789 * 17 15 13 19 19 H 1.48505 * 109.47051 * 214.99543 * 17 15 13 20 20 H 1.48503 * 109.46959 * 334.99487 * 17 15 13 21 21 C 1.52996 * 109.47240 * 120.00491 * 2 1 3 22 22 C 1.53000 * 117.52070 * 348.87522 * 21 2 1 23 23 C 1.52997 * 60.00056 * 107.48179 * 22 21 2 24 24 H 1.09007 * 109.46662 * 299.99519 * 1 2 3 25 25 H 1.08996 * 109.47524 * 59.99347 * 1 2 3 26 26 H 1.08996 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47076 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47481 * 300.00680 * 3 2 1 29 29 H 1.07995 * 120.00039 * 0.02562 * 5 4 3 30 30 H 1.07998 * 119.99979 * 180.23179 * 6 5 4 31 31 H 1.08004 * 120.00255 * 179.71984 * 7 6 5 32 32 H 1.08001 * 120.00040 * 179.97438 * 8 7 6 33 33 H 1.08006 * 119.99811 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00059 * 3.91136 * 10 2 1 35 35 H 0.96999 * 119.99606 * 179.97438 * 16 15 13 36 36 H 1.09001 * 115.54852 * 203.17453 * 21 2 1 37 37 H 1.08998 * 117.49778 * 214.97478 * 22 21 2 38 38 H 1.08997 * 117.49246 * 359.97438 * 22 21 2 39 39 H 1.09003 * 117.50077 * 252.51503 * 23 22 21 40 40 H 1.09001 * 117.51824 * 107.47948 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5377 2.1529 1.2305 5 6 0.3325 2.8290 1.1948 6 6 -0.1305 3.4765 2.3249 7 6 0.6167 3.4566 3.4878 8 6 1.8243 2.7849 3.5221 9 6 2.2846 2.1326 2.3936 10 7 2.0183 -0.6905 -1.1962 11 6 3.3408 -0.8830 -1.3707 12 8 4.1223 -0.5689 -0.4924 13 6 3.8370 -1.4699 -2.6164 14 1 3.1401 -1.8251 -3.3610 15 6 5.2154 -1.5707 -2.8426 16 7 6.0581 -1.2349 -1.9021 17 14 5.8492 -2.1852 -4.4889 18 1 6.1485 -1.0263 -5.3679 19 1 7.0864 -2.9790 -4.2780 20 1 4.8165 -3.0388 -5.1295 21 6 2.0400 -0.7213 1.2491 22 6 1.0205 -1.0499 2.3416 23 6 1.5881 -2.1672 1.4640 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 -0.2492 2.8479 0.2851 30 1 -1.0738 4.0016 2.2981 31 1 0.2571 3.9663 4.3695 32 1 2.4083 2.7697 4.4305 33 1 3.2284 1.6081 2.4203 34 1 1.3897 -1.0091 -1.8628 35 1 7.0128 -1.3051 -2.0587 36 1 3.0491 -0.4571 1.5655 37 1 1.3588 -1.0017 3.3766 38 1 -0.0139 -0.7517 2.1706 39 1 0.9272 -2.6044 0.7156 40 1 2.3001 -2.8543 1.9213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457058878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:16 Heat of formation + Delta-G solvation = -11.514621 kcal Electronic energy + Delta-G solvation = -21548.848890 eV Core-core repulsion = 18521.187288 eV Total energy + Delta-G solvation = -3027.661601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14291 -39.48788 -37.95289 -35.26173 -34.46536 -33.22808 -31.72663 -30.45877 -28.21506 -27.64255 -24.56450 -23.35929 -23.03212 -22.25972 -21.95640 -19.55508 -19.12261 -17.47276 -17.34838 -17.01550 -16.32317 -16.14897 -15.79270 -15.72616 -15.07884 -14.49017 -14.34822 -14.16901 -13.80335 -13.61826 -13.29502 -13.21429 -13.07175 -12.89413 -12.79334 -12.53755 -12.36719 -12.06118 -12.00256 -11.83555 -11.74998 -11.52758 -11.15399 -10.87392 -10.86525 -9.69601 -9.66560 -9.54642 -9.13189 -8.22062 -6.77360 0.56972 0.60824 1.39034 1.39818 1.54696 2.25431 2.55751 2.88131 2.99536 3.40514 3.68209 3.78374 4.04502 4.09605 4.13145 4.20655 4.27166 4.29678 4.39193 4.42144 4.58634 4.70098 4.75977 4.77444 4.88862 4.95572 5.02287 5.10550 5.18178 5.25263 5.28268 5.34077 5.35844 5.36849 5.56260 5.68435 5.71774 5.91661 5.97139 6.23792 6.33196 6.47081 6.93973 7.70512 8.59817 8.80175 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026804 B = 0.005068 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.360861 B = 5523.726236 C = 5721.877510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.222 3.778 3 C -0.081 4.081 4 C -0.068 4.068 5 C -0.123 4.123 6 C -0.118 4.118 7 C -0.128 4.128 8 C -0.125 4.125 9 C -0.126 4.126 10 N -0.748 5.748 11 C 0.549 3.451 12 O -0.611 6.611 13 C -0.579 4.579 14 H 0.080 0.920 15 C 0.034 3.966 16 N -0.822 5.822 17 Si 0.989 3.011 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.250 1.250 21 C -0.139 4.139 22 C -0.153 4.153 23 C -0.181 4.181 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.134 0.866 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.390 0.610 35 H 0.270 0.730 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.638 6.129 6.506 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.136 3.864 3 C -0.120 4.120 4 C -0.069 4.069 5 C -0.141 4.141 6 C -0.135 4.135 7 C -0.146 4.146 8 C -0.143 4.143 9 C -0.145 4.145 10 N -0.402 5.402 11 C 0.352 3.648 12 O -0.496 6.496 13 C -0.616 4.616 14 H 0.098 0.902 15 C -0.181 4.181 16 N -0.452 5.452 17 Si 0.809 3.191 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.174 1.174 21 C -0.159 4.159 22 C -0.190 4.190 23 C -0.219 4.219 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.152 0.848 30 H 0.167 0.833 31 H 0.164 0.836 32 H 0.148 0.852 33 H 0.107 0.893 34 H 0.223 0.777 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.113 0.887 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.905 6.385 7.195 16.908 hybrid contribution 1.080 -0.671 -1.016 1.627 sum -12.825 5.714 6.179 15.340 Atomic orbital electron populations 1.22187 0.91797 1.02905 1.03629 1.19397 0.93948 0.89045 0.84021 1.20851 0.99969 0.95578 0.95569 1.19708 0.95499 0.97385 0.94292 1.21212 0.95148 0.97935 0.99777 1.21427 1.00639 0.99045 0.92420 1.21408 0.94438 0.99558 0.99171 1.21294 0.97376 0.97812 0.97787 1.21024 0.99450 0.99981 0.93997 1.46038 1.07328 1.63405 1.23393 1.18314 0.80721 0.78190 0.87541 1.90533 1.56597 1.56972 1.45506 1.21463 0.92963 1.43700 1.03500 0.90209 1.26812 0.96872 0.92964 1.01460 1.70187 1.03071 1.37391 1.34510 0.85141 0.78198 0.78813 0.76956 1.19018 1.20008 1.17365 1.22276 0.97831 0.98062 0.97684 1.23115 0.99198 1.01486 0.95226 1.22746 1.03700 0.91863 1.03548 0.89536 0.90980 0.91551 0.94388 0.91622 0.84842 0.83279 0.83600 0.85155 0.89280 0.77687 0.91976 0.91866 0.89222 0.86598 0.88736 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 6.63 71.98 0.48 -3.47 16 2 C 0.22 8.26 0.65 3.60 0.00 8.26 16 3 C -0.08 -3.15 4.44 29.85 0.13 -3.02 16 4 C -0.07 -2.17 4.20 -19.86 -0.08 -2.25 16 5 C -0.12 -3.01 7.90 22.27 0.18 -2.84 16 6 C -0.12 -2.35 10.05 22.27 0.22 -2.12 16 7 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 8 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 9 C -0.13 -4.09 8.69 22.27 0.19 -3.90 16 10 N -0.75 -32.89 5.02 -427.16 -2.14 -35.04 16 11 C 0.55 31.18 7.15 86.36 0.62 31.79 16 12 O -0.61 -39.35 11.86 -4.31 -0.05 -39.40 16 13 C -0.58 -33.01 9.54 24.83 0.24 -32.77 16 14 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 15 C 0.03 1.90 5.50 85.31 0.47 2.37 16 16 N -0.82 -50.77 11.85 21.84 0.26 -50.51 16 17 Si 0.99 41.87 29.56 68.60 2.03 43.89 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 21 C -0.14 -5.50 2.58 -10.80 -0.03 -5.53 16 22 C -0.15 -4.62 9.61 30.59 0.29 -4.33 16 23 C -0.18 -6.53 9.80 30.59 0.30 -6.23 16 24 H 0.09 2.06 4.90 -2.38 -0.01 2.05 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.66 7.02 -2.39 -0.02 1.64 16 27 H 0.04 1.89 6.58 -2.39 -0.02 1.87 16 28 H 0.07 2.42 8.08 -2.39 -0.02 2.40 16 29 H 0.13 2.79 8.04 -2.91 -0.02 2.77 16 30 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 32 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.09 3.40 7.51 -2.91 -0.02 3.37 16 34 H 0.39 15.02 8.46 -92.71 -0.78 14.24 16 35 H 0.27 15.28 8.29 -92.71 -0.77 14.51 16 36 H 0.06 3.13 6.61 -2.39 -0.02 3.12 16 37 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.12 2.93 5.87 -2.39 -0.01 2.92 16 39 H 0.09 3.21 7.45 -2.39 -0.02 3.19 16 40 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -74.23 321.69 3.81 -70.42 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: 0.26 Total: 40.00 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 3.46 Total: -29.36 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -1.88 Total: -85.54 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.05 Total: -39.40 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -74.23 3.81 -70.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457058878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.904 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds