Wall clock time and date at job start Mon Mar 30 2020 01:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32684 * 1 3 3 C 1.47668 * 119.99646 * 2 1 4 4 C 1.39706 * 120.00052 * 359.72762 * 3 2 1 5 5 C 1.37598 * 120.00605 * 179.76197 * 4 3 2 6 6 C 1.39745 * 119.99600 * 0.50977 * 5 4 3 7 7 C 1.47688 * 120.00723 * 179.71723 * 6 5 4 8 8 O 1.21573 * 120.00061 * 180.02562 * 7 6 5 9 9 N 1.34769 * 119.99815 * 0.02610 * 7 6 5 10 10 C 1.46499 * 119.99891 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47235 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47315 * 300.00902 * 11 10 9 13 13 C 1.53005 * 109.46592 * 60.00475 * 11 10 9 14 14 C 1.50701 * 109.47248 * 180.02562 * 11 10 9 15 15 H 1.07991 * 119.99742 * 0.02562 * 14 11 10 16 16 C 1.37877 * 119.99757 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00056 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 119.99796 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47206 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47377 * 119.99608 * 18 16 14 21 21 H 1.48509 * 109.47112 * 239.99635 * 18 16 14 22 22 C 1.39747 * 119.98983 * 359.74150 * 6 5 4 23 23 C 1.37603 * 119.99749 * 0.02562 * 22 6 5 24 24 H 1.07997 * 120.00240 * 179.97438 * 1 2 3 25 25 H 1.08009 * 120.00161 * 359.72028 * 1 2 3 26 26 H 1.07999 * 119.99987 * 180.02562 * 2 1 3 27 27 H 1.08004 * 119.99732 * 0.02562 * 4 3 2 28 28 H 1.08005 * 120.00547 * 180.25194 * 5 4 3 29 29 H 0.97000 * 120.00330 * 359.97438 * 9 7 6 30 30 H 1.09002 * 109.47621 * 299.99920 * 10 9 7 31 31 H 1.09000 * 109.47119 * 60.00645 * 10 9 7 32 32 H 1.08997 * 109.47854 * 59.99419 * 12 11 10 33 33 H 1.08998 * 109.47047 * 180.02562 * 12 11 10 34 34 H 1.09006 * 109.46633 * 299.99115 * 12 11 10 35 35 H 1.09001 * 109.47379 * 59.99789 * 13 11 10 36 36 H 1.09004 * 109.46886 * 180.02562 * 13 11 10 37 37 H 1.08997 * 109.46896 * 299.99551 * 13 11 10 38 38 H 0.96999 * 119.99782 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.00394 * 179.97438 * 22 6 5 40 40 H 1.07994 * 119.99855 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 1.3665 2.4887 -0.0058 5 6 2.0543 3.6805 -0.0008 6 6 3.4517 3.6806 -0.0008 7 6 4.1902 4.9596 -0.0018 8 8 5.4059 4.9596 -0.0022 9 7 3.5163 6.1268 -0.0022 10 6 4.2488 7.3955 -0.0026 11 6 3.2546 8.5585 -0.0036 12 6 2.3753 8.4767 -1.2530 13 6 2.3746 8.4781 1.2454 14 6 4.0081 9.8636 -0.0047 15 1 5.0880 9.8635 -0.0051 16 6 3.3186 11.0576 -0.0052 17 7 2.0035 11.0575 -0.0053 18 14 4.2526 12.6753 -0.0073 19 1 5.7127 12.4040 -0.0075 20 1 3.8931 13.4530 -1.2202 21 1 3.8946 13.4551 1.2048 22 6 4.1504 2.4703 -0.0003 23 6 3.4623 1.2787 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9354 0.0046 26 1 1.8668 -0.9353 -0.0004 27 1 0.2865 2.4886 -0.0098 28 1 1.5142 4.6158 -0.0011 29 1 2.5463 6.1268 -0.0022 30 1 4.8755 7.4536 0.8873 31 1 4.8754 7.4530 -0.8927 32 1 1.8303 7.5327 -1.2527 33 1 1.6673 9.3054 -1.2539 34 1 3.0023 8.5340 -2.1429 35 1 3.0010 8.5363 2.1356 36 1 1.6659 9.3063 1.2445 37 1 1.8296 7.5342 1.2457 38 1 1.5185 11.8976 -0.0060 39 1 5.2304 2.4702 -0.0008 40 1 4.0022 0.3434 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:49 Heat of formation + Delta-G solvation = -2.186867 kcal Electronic energy + Delta-G solvation = -20300.009404 eV Core-core repulsion = 17272.752284 eV Total energy + Delta-G solvation = -3027.257120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02620 -38.44549 -36.35906 -34.33459 -33.36973 -31.38073 -30.70306 -29.60520 -25.83708 -25.74526 -25.16773 -23.64081 -22.76557 -20.68500 -19.68643 -18.88995 -17.84933 -16.49125 -15.79511 -15.39081 -14.99767 -14.77547 -14.71839 -14.55675 -13.89300 -13.42748 -13.18592 -13.18484 -12.89513 -12.59680 -12.36538 -12.19306 -11.48934 -11.41261 -11.22582 -11.02050 -10.89650 -10.67136 -10.54275 -10.39708 -10.21541 -9.65528 -9.65414 -9.28345 -9.12486 -8.79740 -8.55687 -8.40800 -8.25122 -6.03408 -4.13339 0.47791 1.29237 2.10829 3.23040 3.26712 3.35339 3.39886 3.69507 3.98150 4.39487 4.47848 4.56339 4.77753 4.96910 5.05403 5.22882 5.23576 5.29995 5.49127 5.67507 5.87319 6.03758 6.08958 6.19473 6.29973 6.31300 6.37269 6.49124 6.52915 6.75533 6.76732 6.79981 6.92551 6.99874 7.00239 7.33652 7.53873 7.68399 7.99242 8.01913 8.13664 8.36971 8.65190 8.87643 9.52630 10.98140 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.036500 B = 0.003539 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.946258 B = 7909.813521 C = 8485.699768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.120 4.120 3 C -0.045 4.045 4 C -0.122 4.122 5 C -0.084 4.084 6 C -0.125 4.125 7 C 0.545 3.455 8 O -0.549 6.549 9 N -0.710 5.710 10 C 0.131 3.869 11 C 0.055 3.945 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.505 4.505 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.062 4.062 23 C -0.119 4.119 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.119 0.881 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.397 0.603 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.005 0.995 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.086 0.914 37 H 0.005 0.995 38 H 0.259 0.741 39 H 0.137 0.863 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 -18.507 0.008 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 C -0.045 4.045 4 C -0.140 4.140 5 C -0.103 4.103 6 C -0.128 4.128 7 C 0.331 3.669 8 O -0.429 6.429 9 N -0.360 5.360 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.081 4.081 23 C -0.137 4.137 24 H 0.123 0.877 25 H 0.122 0.878 26 H 0.137 0.863 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.234 0.766 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.024 0.976 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.024 0.976 38 H 0.069 0.931 39 H 0.155 0.845 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.810 -18.310 0.007 18.703 hybrid contribution -0.056 0.914 0.001 0.916 sum -3.866 -17.396 0.008 17.820 Atomic orbital electron populations 1.24455 0.95699 1.02427 0.98712 1.21833 0.95250 0.95739 1.00964 1.19280 0.93422 0.93177 0.98645 1.21210 1.00066 0.91464 1.01241 1.21315 0.93201 0.98588 0.97205 1.20236 0.93698 0.94253 1.04576 1.18257 0.87340 0.83919 0.77380 1.90738 1.13445 1.87754 1.50976 1.46268 1.10698 1.06304 1.72743 1.21770 0.95447 0.81242 1.00687 1.18372 0.91913 0.91409 0.92853 1.21836 1.00298 0.99129 0.97619 1.21838 1.00293 0.99133 0.97617 1.21022 0.92939 0.89690 1.50721 0.92333 1.24881 0.94884 0.98994 0.94777 1.69811 1.05781 1.26196 1.50682 0.86511 0.80234 0.83591 0.77526 1.19745 1.21054 1.21058 1.21221 1.00885 0.90739 0.95262 1.21210 0.93136 0.98102 1.01221 0.87704 0.87837 0.86296 0.85228 0.85264 0.76631 0.92508 0.92513 0.97599 0.89519 0.95367 0.95360 0.89521 0.97603 0.93053 0.84520 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 14.15 28.84 0.41 -0.82 16 2 C -0.12 -0.98 9.90 -37.62 -0.37 -1.35 16 3 C -0.04 -0.47 5.87 -104.95 -0.62 -1.09 16 4 C -0.12 -1.32 9.38 -39.27 -0.37 -1.68 16 5 C -0.08 -1.06 9.52 -39.25 -0.37 -1.43 16 6 C -0.12 -1.85 5.88 -104.91 -0.62 -2.47 16 7 C 0.54 10.01 7.77 -12.40 -0.10 9.91 16 8 O -0.55 -11.86 16.33 5.30 0.09 -11.77 16 9 N -0.71 -13.04 4.91 -61.30 -0.30 -13.34 16 10 C 0.13 2.81 4.50 -4.04 -0.02 2.80 16 11 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 12 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 13 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 14 C -0.51 -13.23 8.01 -34.44 -0.28 -13.51 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 17 N -0.89 -23.51 9.35 55.43 0.52 -23.00 16 18 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.06 -0.82 9.58 -39.25 -0.38 -1.20 16 23 C -0.12 -1.28 9.76 -39.26 -0.38 -1.66 16 24 H 0.10 0.55 8.06 -52.49 -0.42 0.13 16 25 H 0.10 0.69 6.02 -52.48 -0.32 0.37 16 26 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.13 1.10 6.15 -52.48 -0.32 0.78 16 28 H 0.13 1.48 6.38 -52.48 -0.34 1.14 16 29 H 0.40 6.55 4.18 -40.82 -0.17 6.38 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 33 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 37 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 38 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 39 H 0.14 1.81 7.64 -52.49 -0.40 1.41 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -29.04 326.61 -7.84 -36.88 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.39 Total: 5.59 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -2.66 Total: -14.97 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.22 Total: -36.34 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.04 -7.84 -36.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.693 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds