Wall clock time and date at job start Mon Mar 30 2020 01:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32684 * 1 3 3 C 1.47668 * 119.99646 * 2 1 4 4 C 1.39706 * 120.00052 * 359.72762 * 3 2 1 5 5 C 1.37598 * 120.00605 * 179.76197 * 4 3 2 6 6 C 1.39745 * 119.99600 * 0.50977 * 5 4 3 7 7 C 1.47688 * 120.00723 * 179.71723 * 6 5 4 8 8 O 1.21573 * 120.00061 * 180.02562 * 7 6 5 9 9 N 1.34769 * 119.99815 * 0.02610 * 7 6 5 10 10 C 1.46499 * 119.99891 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47235 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47315 * 300.00902 * 11 10 9 13 13 C 1.53005 * 109.46592 * 60.00475 * 11 10 9 14 14 C 1.50701 * 109.47248 * 180.02562 * 11 10 9 15 15 H 1.07991 * 119.99742 * 0.02562 * 14 11 10 16 16 C 1.37877 * 119.99757 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00056 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 119.99796 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47206 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47377 * 119.99608 * 18 16 14 21 21 H 1.48509 * 109.47112 * 239.99635 * 18 16 14 22 22 C 1.39747 * 119.98983 * 359.74150 * 6 5 4 23 23 C 1.37603 * 119.99749 * 0.02562 * 22 6 5 24 24 H 1.07997 * 120.00240 * 179.97438 * 1 2 3 25 25 H 1.08009 * 120.00161 * 359.72028 * 1 2 3 26 26 H 1.07999 * 119.99987 * 180.02562 * 2 1 3 27 27 H 1.08004 * 119.99732 * 0.02562 * 4 3 2 28 28 H 1.08005 * 120.00547 * 180.25194 * 5 4 3 29 29 H 0.97000 * 120.00330 * 359.97438 * 9 7 6 30 30 H 1.09002 * 109.47621 * 299.99920 * 10 9 7 31 31 H 1.09000 * 109.47119 * 60.00645 * 10 9 7 32 32 H 1.08997 * 109.47854 * 59.99419 * 12 11 10 33 33 H 1.08998 * 109.47047 * 180.02562 * 12 11 10 34 34 H 1.09006 * 109.46633 * 299.99115 * 12 11 10 35 35 H 1.09001 * 109.47379 * 59.99789 * 13 11 10 36 36 H 1.09004 * 109.46886 * 180.02562 * 13 11 10 37 37 H 1.08997 * 109.46896 * 299.99551 * 13 11 10 38 38 H 0.96999 * 119.99782 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.00394 * 179.97438 * 22 6 5 40 40 H 1.07994 * 119.99855 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 1.3665 2.4887 -0.0058 5 6 2.0543 3.6805 -0.0008 6 6 3.4517 3.6806 -0.0008 7 6 4.1902 4.9596 -0.0018 8 8 5.4059 4.9596 -0.0022 9 7 3.5163 6.1268 -0.0022 10 6 4.2488 7.3955 -0.0026 11 6 3.2546 8.5585 -0.0036 12 6 2.3753 8.4767 -1.2530 13 6 2.3746 8.4781 1.2454 14 6 4.0081 9.8636 -0.0047 15 1 5.0880 9.8635 -0.0051 16 6 3.3186 11.0576 -0.0052 17 7 2.0035 11.0575 -0.0053 18 14 4.2526 12.6753 -0.0073 19 1 5.7127 12.4040 -0.0075 20 1 3.8931 13.4530 -1.2202 21 1 3.8946 13.4551 1.2048 22 6 4.1504 2.4703 -0.0003 23 6 3.4623 1.2787 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9354 0.0046 26 1 1.8668 -0.9353 -0.0004 27 1 0.2865 2.4886 -0.0098 28 1 1.5142 4.6158 -0.0011 29 1 2.5463 6.1268 -0.0022 30 1 4.8755 7.4536 0.8873 31 1 4.8754 7.4530 -0.8927 32 1 1.8303 7.5327 -1.2527 33 1 1.6673 9.3054 -1.2539 34 1 3.0023 8.5340 -2.1429 35 1 3.0010 8.5363 2.1356 36 1 1.6659 9.3063 1.2445 37 1 1.8296 7.5342 1.2457 38 1 1.5185 11.8976 -0.0060 39 1 5.2304 2.4702 -0.0008 40 1 4.0022 0.3434 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457989767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:49 Heat of formation + Delta-G solvation = -17.531357 kcal Electronic energy + Delta-G solvation = -20300.674791 eV Core-core repulsion = 17272.752284 eV Total energy + Delta-G solvation = -3027.922507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26519 -39.61861 -38.10921 -35.26529 -34.93306 -32.91311 -31.91179 -30.55000 -27.58747 -27.54133 -26.94578 -24.78832 -23.66700 -21.89908 -20.66596 -20.54069 -19.17341 -17.87413 -17.32583 -16.72819 -16.45091 -16.31570 -15.84989 -15.76358 -15.02074 -14.80410 -14.67364 -14.35869 -14.13813 -13.94595 -13.78112 -13.21672 -13.18927 -13.12166 -12.71280 -12.58525 -12.27701 -12.23037 -12.14542 -11.79979 -11.51382 -11.33676 -11.30936 -10.97314 -10.71048 -10.41574 -10.04180 -10.01773 -9.18388 -8.03639 -6.19310 -0.43214 0.40433 1.31094 1.40932 1.45077 1.54560 2.09728 2.24374 2.48156 2.97155 3.20055 3.66050 3.77477 3.91575 3.96141 4.33294 4.35642 4.40686 4.47741 4.48613 4.67109 4.76694 4.94230 4.96797 5.02605 5.03410 5.09441 5.16797 5.25325 5.30935 5.36247 5.38093 5.53855 5.64963 5.66379 5.67409 5.83022 5.93553 6.12734 6.18926 6.41771 6.59326 6.84456 7.21075 7.48461 8.95687 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.036500 B = 0.003539 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.946258 B = 7909.813521 C = 8485.699768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.142 4.142 3 C -0.035 4.035 4 C -0.127 4.127 5 C -0.084 4.084 6 C -0.155 4.155 7 C 0.544 3.456 8 O -0.591 6.591 9 N -0.704 5.704 10 C 0.146 3.854 11 C 0.051 3.949 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.529 4.529 15 H 0.044 0.956 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.946 3.054 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.072 4.072 23 C -0.119 4.119 24 H 0.126 0.874 25 H 0.107 0.893 26 H 0.137 0.863 27 H 0.157 0.843 28 H 0.138 0.862 29 H 0.408 0.592 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.065 0.935 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.261 0.739 39 H 0.127 0.873 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 -20.698 0.008 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C -0.035 4.035 4 C -0.144 4.144 5 C -0.102 4.102 6 C -0.158 4.158 7 C 0.333 3.667 8 O -0.474 6.474 9 N -0.355 5.355 10 C 0.023 3.977 11 C 0.051 3.949 12 C -0.179 4.179 13 C -0.179 4.179 14 C -0.568 4.568 15 H 0.062 0.938 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.773 3.227 19 H -0.201 1.201 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.091 4.091 23 C -0.137 4.137 24 H 0.144 0.856 25 H 0.126 0.874 26 H 0.154 0.846 27 H 0.174 0.826 28 H 0.156 0.844 29 H 0.246 0.754 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.145 0.855 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.778 -20.512 0.007 21.310 hybrid contribution 0.447 1.448 0.001 1.515 sum -5.331 -19.064 0.008 19.795 Atomic orbital electron populations 1.24771 0.95392 1.03724 0.95463 1.21940 0.95785 0.95212 1.03062 1.19666 0.93450 0.94321 0.96085 1.21524 1.01419 0.90841 1.00631 1.21425 0.92128 0.99903 0.96777 1.19985 0.94636 0.92579 1.08584 1.18843 0.87040 0.84912 0.75864 1.90703 1.15374 1.88405 1.52883 1.46062 1.11015 1.05385 1.73045 1.21343 0.94915 0.82374 0.99105 1.18365 0.92180 0.90799 0.93573 1.21680 0.99625 0.99838 0.96756 1.21681 0.99620 0.99844 0.96754 1.21289 0.92628 0.91541 1.51317 0.93763 1.25446 0.95668 1.01370 0.94617 1.69905 1.06407 1.26761 1.50652 0.85693 0.78940 0.80508 0.77573 1.20098 1.20644 1.20650 1.21274 1.00663 0.91339 0.95801 1.21473 0.93652 0.98096 1.00492 0.85596 0.87447 0.84559 0.82593 0.84413 0.75381 0.94175 0.94184 0.94556 0.91636 0.96282 0.96271 0.91637 0.94560 0.92964 0.85530 0.82668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 14.15 66.65 0.94 -0.55 16 2 C -0.14 -1.76 9.90 23.59 0.23 -1.53 16 3 C -0.03 -0.62 5.87 -20.07 -0.12 -0.74 16 4 C -0.13 -2.36 9.38 22.47 0.21 -2.15 16 5 C -0.08 -1.96 9.52 22.48 0.21 -1.74 16 6 C -0.15 -4.55 5.88 -20.05 -0.12 -4.67 16 7 C 0.54 20.42 7.77 86.74 0.67 21.09 16 8 O -0.59 -26.58 16.33 -3.94 -0.06 -26.64 16 9 N -0.70 -25.95 4.91 -466.12 -2.29 -28.24 16 10 C 0.15 6.46 4.50 86.38 0.39 6.85 16 11 C 0.05 2.41 0.50 -52.93 -0.03 2.39 16 12 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 13 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 14 C -0.53 -28.30 8.01 25.60 0.21 -28.10 16 15 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 16 C 0.03 1.52 5.15 84.65 0.44 1.96 16 17 N -0.90 -47.85 9.35 21.45 0.20 -47.65 16 18 Si 0.95 42.82 29.54 68.60 2.03 44.84 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 C -0.07 -1.88 9.58 22.48 0.22 -1.66 16 23 C -0.12 -2.33 9.76 22.48 0.22 -2.12 16 24 H 0.13 0.70 8.06 -2.91 -0.02 0.68 16 25 H 0.11 0.93 6.02 -2.91 -0.02 0.92 16 26 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 27 H 0.16 2.01 6.15 -2.91 -0.02 2.00 16 28 H 0.14 2.86 6.38 -2.91 -0.02 2.84 16 29 H 0.41 13.01 4.18 -92.71 -0.39 12.62 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 33 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 34 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 3.24 6.07 -2.38 -0.01 3.22 16 37 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 38 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 39 H 0.13 3.47 7.64 -2.91 -0.02 3.45 16 40 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -63.69 326.61 5.17 -58.52 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.65 Total: 19.84 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 4.64 Total: -20.67 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -2.09 Total: -75.89 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -63.69 5.17 -58.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.988 kcal (2) G-P(sol) polarization free energy of solvation -63.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds