Wall clock time and date at job start Mon Mar 30 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47178 * 2 1 4 4 C 1.52999 * 109.46926 * 120.00569 * 2 1 3 5 5 H 1.09001 * 115.56175 * 274.30337 * 4 2 1 6 6 C 1.52998 * 117.49884 * 128.62467 * 4 2 1 7 7 C 1.52992 * 117.50283 * 59.99775 * 4 2 1 8 8 H 1.09006 * 117.52119 * 0.02562 * 7 4 2 9 9 N 1.46498 * 117.50009 * 214.97650 * 7 4 2 10 10 C 1.34785 * 119.99766 * 154.98582 * 9 7 4 11 11 O 1.21582 * 119.99938 * 359.97438 * 10 9 7 12 12 C 1.47640 * 119.99747 * 180.02562 * 10 9 7 13 13 C 1.40015 * 119.89768 * 179.97438 * 12 10 9 14 14 C 1.36306 * 120.10890 * 179.97438 * 13 12 10 15 15 C 1.40888 * 119.89524 * 0.02562 * 14 13 12 16 16 C 1.41111 * 120.10660 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99915 * 331.91278 * 16 15 14 18 18 C 1.40223 * 119.99871 * 151.91898 * 16 15 14 19 19 N 1.30652 * 119.99561 * 147.59951 * 18 16 15 20 20 Si 1.86799 * 120.00396 * 327.31625 * 18 16 15 21 21 H 1.48493 * 109.47230 * 270.28287 * 20 18 16 22 22 H 1.48500 * 109.46620 * 30.28031 * 20 18 16 23 23 H 1.48496 * 109.47374 * 150.27772 * 20 18 16 24 24 C 1.40889 * 119.79036 * 0.24678 * 15 14 13 25 25 C 1.36318 * 119.89363 * 359.48907 * 24 15 14 26 26 H 1.08995 * 109.47200 * 299.99835 * 1 2 3 27 27 H 1.09001 * 109.47247 * 60.00097 * 1 2 3 28 28 H 1.09004 * 109.47437 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46671 * 239.99931 * 2 1 3 30 30 H 1.08997 * 109.47655 * 300.00169 * 3 2 1 31 31 H 1.09003 * 109.46854 * 60.00329 * 3 2 1 32 32 H 1.09003 * 109.47115 * 180.02562 * 3 2 1 33 33 H 1.09000 * 117.50013 * 145.01943 * 6 4 2 34 34 H 1.09006 * 117.49985 * 359.97438 * 6 4 2 35 35 H 0.96999 * 120.00186 * 334.98780 * 9 7 4 36 36 H 1.07997 * 119.94058 * 0.02562 * 13 12 10 37 37 H 1.08003 * 120.05428 * 179.97438 * 14 13 12 38 38 H 0.96998 * 120.00194 * 354.66050 * 19 18 16 39 39 H 1.08002 * 120.05510 * 179.73253 * 24 15 14 40 40 H 1.07997 * 119.95324 * 180.25012 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 2.1271 -0.1063 2.1448 6 6 3.0741 -1.8314 1.0512 7 6 1.6356 -2.1853 1.4342 8 1 1.0066 -2.6351 0.6659 9 7 1.3953 -2.6531 2.8015 10 6 0.5845 -3.7073 3.0203 11 8 0.0522 -4.2697 2.0829 12 6 0.3418 -4.1784 4.3983 13 6 -0.5013 -5.2734 4.6232 14 6 -0.7280 -5.7123 5.8936 15 6 -0.1128 -5.0618 6.9815 16 6 -0.3447 -5.5121 8.2986 17 1 -1.2733 -6.0053 8.5449 18 6 0.6305 -5.3190 9.2875 19 7 0.2723 -5.1213 10.5283 20 14 2.4418 -5.3521 8.8322 21 1 2.9542 -6.7416 8.9408 22 1 2.6106 -4.8699 7.4379 23 1 3.2006 -4.4711 9.7559 24 6 0.7302 -3.9568 6.7506 25 6 0.9552 -3.5285 5.4762 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 3.8415 -1.9467 1.8167 34 1 3.3909 -2.0481 0.0310 35 1 1.8196 -2.2041 3.5493 36 1 -0.9721 -5.7716 3.7886 37 1 -1.3788 -6.5567 6.0662 38 1 -0.6668 -5.0309 10.7535 39 1 1.2006 -3.4524 7.5817 40 1 1.6044 -2.6841 5.2979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458112144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:04 Heat of formation + Delta-G solvation = -20.109815 kcal Electronic energy + Delta-G solvation = -20078.067759 eV Core-core repulsion = 17050.033442 eV Total energy + Delta-G solvation = -3028.034317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.54898 -38.17261 -37.06541 -34.23041 -33.99179 -32.00064 -30.30676 -29.80186 -27.29603 -25.73792 -23.13516 -22.52199 -21.31014 -21.14107 -20.17956 -19.53692 -18.33233 -17.11963 -16.21212 -15.11309 -14.66615 -14.52404 -14.27508 -14.12015 -13.98178 -13.82095 -13.21454 -12.85188 -12.72498 -12.59105 -12.52493 -12.34257 -12.07179 -11.51592 -11.41508 -11.24822 -11.11665 -10.99599 -10.86267 -10.80293 -10.27798 -10.15998 -10.06555 -9.58261 -9.23366 -9.10517 -8.41194 -7.92799 -7.75354 -7.56251 -4.75724 2.05531 2.74194 3.07415 3.15539 3.39928 3.53080 3.59141 3.87044 3.95642 4.41631 4.61010 4.73643 4.83709 5.01449 5.16070 5.27157 5.29877 5.46283 5.51762 5.60020 5.72376 5.75139 5.77151 5.81562 5.90179 6.03194 6.06464 6.12902 6.21638 6.27467 6.50049 6.70998 6.83394 6.90826 7.19178 7.24343 7.40289 7.51007 7.66421 7.81713 8.10269 8.17200 8.36219 8.53590 8.94368 9.62675 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.003781 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.661027 B = 7403.002061 C = 7818.664488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.160 4.160 5 H 0.104 0.896 6 C -0.195 4.195 7 C 0.097 3.903 8 H 0.133 0.867 9 N -0.713 5.713 10 C 0.576 3.424 11 O -0.572 6.572 12 C -0.290 4.290 13 C -0.016 4.016 14 C -0.233 4.233 15 C 0.107 3.893 16 C -0.504 4.504 17 H 0.084 0.916 18 C 0.053 3.947 19 N -0.779 5.779 20 Si 1.038 2.962 21 H -0.276 1.276 22 H -0.235 1.235 23 H -0.275 1.275 24 C -0.225 4.225 25 C -0.043 4.043 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.398 0.602 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.293 0.707 39 H 0.099 0.901 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.377 9.395 -12.264 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C -0.201 4.201 4 C -0.180 4.180 5 H 0.122 0.878 6 C -0.233 4.233 7 C -0.010 4.010 8 H 0.151 0.849 9 N -0.363 5.363 10 C 0.371 3.629 11 O -0.453 6.453 12 C -0.294 4.294 13 C -0.035 4.035 14 C -0.252 4.252 15 C 0.103 3.897 16 C -0.530 4.530 17 H 0.102 0.898 18 C -0.173 4.173 19 N -0.399 5.399 20 Si 0.859 3.141 21 H -0.202 1.202 22 H -0.159 1.159 23 H -0.200 1.200 24 C -0.244 4.244 25 C -0.062 4.062 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.233 0.767 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.415 9.056 -12.159 16.462 hybrid contribution -1.420 0.151 0.071 1.429 sum 4.995 9.207 -12.088 15.995 Atomic orbital electron populations 1.21830 0.94842 1.02311 1.01494 1.20670 0.95807 0.95778 0.95922 1.21802 1.00950 0.95649 1.01654 1.22892 1.03691 0.91424 0.99968 0.87775 1.23592 0.93686 1.03195 1.02868 1.21536 0.97059 0.95301 0.87056 0.84913 1.45350 1.50488 1.33874 1.06596 1.18524 0.76627 0.78099 0.89626 1.90632 1.51691 1.57765 1.45228 1.18835 1.13795 1.06489 0.90294 1.20408 0.93684 0.93163 0.96267 1.20715 1.09136 1.03310 0.92010 1.17807 0.89449 0.89459 0.92981 1.20823 1.04363 1.33804 0.93978 0.89805 1.27496 1.08204 0.89364 0.92195 1.70486 1.22898 1.25513 1.20953 0.84093 0.71978 0.78668 0.79348 1.20210 1.15860 1.19967 1.20615 1.07619 1.00795 0.95362 1.20386 0.96182 0.96683 0.92900 0.92594 0.92891 0.92258 0.91157 0.92774 0.92660 0.92672 0.88709 0.88392 0.76705 0.87791 0.88151 0.89483 0.88281 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.03 37.16 0.34 -1.14 16 2 C -0.06 -0.59 3.07 -90.62 -0.28 -0.87 16 3 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 4 C -0.16 -1.71 5.07 -90.63 -0.46 -2.17 16 5 H 0.10 1.09 8.11 -51.93 -0.42 0.67 16 6 C -0.19 -2.13 10.10 -26.73 -0.27 -2.40 16 7 C 0.10 1.34 5.64 -67.93 -0.38 0.95 16 8 H 0.13 2.03 6.87 -51.93 -0.36 1.67 16 9 N -0.71 -11.45 5.51 -54.81 -0.30 -11.76 16 10 C 0.58 11.75 7.76 -12.42 -0.10 11.66 16 11 O -0.57 -13.14 15.89 5.29 0.08 -13.05 16 12 C -0.29 -6.29 5.89 -104.73 -0.62 -6.90 16 13 C -0.02 -0.36 9.52 -39.61 -0.38 -0.74 16 14 C -0.23 -5.42 9.73 -39.27 -0.38 -5.80 16 15 C 0.11 2.58 5.04 -106.80 -0.54 2.04 16 16 C -0.50 -12.62 9.29 -37.75 -0.35 -12.97 16 17 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 18 C 0.05 1.27 5.13 -17.31 -0.09 1.18 16 19 N -0.78 -19.20 13.64 55.56 0.76 -18.44 16 20 Si 1.04 21.34 26.73 -169.99 -4.54 16.80 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.24 -4.74 5.27 56.52 0.30 -4.44 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 24 C -0.22 -5.07 6.71 -39.27 -0.26 -5.33 16 25 C -0.04 -0.88 9.47 -39.61 -0.38 -1.25 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.68 7.29 -51.93 -0.38 0.30 16 29 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 35 H 0.40 5.63 6.83 -40.82 -0.28 5.35 16 36 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 37 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 38 H 0.29 7.02 8.73 -40.82 -0.36 6.66 16 39 H 0.10 2.15 5.82 -52.49 -0.31 1.84 16 40 H 0.09 1.56 6.37 -52.49 -0.33 1.23 16 LS Contribution 330.46 15.07 4.98 4.98 Total: -1.00 -27.28 330.46 -8.77 -36.05 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.94 Total: 9.98 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -3.80 Total: -24.56 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 0.46 Total: -30.20 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.54 Total: 16.80 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.28 -8.77 -36.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458112144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.937 kcal (2) G-P(sol) polarization free energy of solvation -27.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds