Wall clock time and date at job start Mon Mar 30 2020 01:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47178 * 2 1 4 4 C 1.52999 * 109.46926 * 120.00569 * 2 1 3 5 5 H 1.09001 * 115.56175 * 274.30337 * 4 2 1 6 6 C 1.52998 * 117.49884 * 128.62467 * 4 2 1 7 7 C 1.52992 * 117.50283 * 59.99775 * 4 2 1 8 8 H 1.09006 * 117.52119 * 0.02562 * 7 4 2 9 9 N 1.46498 * 117.50009 * 214.97650 * 7 4 2 10 10 C 1.34785 * 119.99766 * 154.98582 * 9 7 4 11 11 O 1.21582 * 119.99938 * 359.97438 * 10 9 7 12 12 C 1.47640 * 119.99747 * 180.02562 * 10 9 7 13 13 C 1.40015 * 119.89768 * 179.97438 * 12 10 9 14 14 C 1.36306 * 120.10890 * 179.97438 * 13 12 10 15 15 C 1.40888 * 119.89524 * 0.02562 * 14 13 12 16 16 C 1.41111 * 120.10660 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99915 * 331.91278 * 16 15 14 18 18 C 1.40223 * 119.99871 * 151.91898 * 16 15 14 19 19 N 1.30652 * 119.99561 * 147.59951 * 18 16 15 20 20 Si 1.86799 * 120.00396 * 327.31625 * 18 16 15 21 21 H 1.48493 * 109.47230 * 270.28287 * 20 18 16 22 22 H 1.48500 * 109.46620 * 30.28031 * 20 18 16 23 23 H 1.48496 * 109.47374 * 150.27772 * 20 18 16 24 24 C 1.40889 * 119.79036 * 0.24678 * 15 14 13 25 25 C 1.36318 * 119.89363 * 359.48907 * 24 15 14 26 26 H 1.08995 * 109.47200 * 299.99835 * 1 2 3 27 27 H 1.09001 * 109.47247 * 60.00097 * 1 2 3 28 28 H 1.09004 * 109.47437 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46671 * 239.99931 * 2 1 3 30 30 H 1.08997 * 109.47655 * 300.00169 * 3 2 1 31 31 H 1.09003 * 109.46854 * 60.00329 * 3 2 1 32 32 H 1.09003 * 109.47115 * 180.02562 * 3 2 1 33 33 H 1.09000 * 117.50013 * 145.01943 * 6 4 2 34 34 H 1.09006 * 117.49985 * 359.97438 * 6 4 2 35 35 H 0.96999 * 120.00186 * 334.98780 * 9 7 4 36 36 H 1.07997 * 119.94058 * 0.02562 * 13 12 10 37 37 H 1.08003 * 120.05428 * 179.97438 * 14 13 12 38 38 H 0.96998 * 120.00194 * 354.66050 * 19 18 16 39 39 H 1.08002 * 120.05510 * 179.73253 * 24 15 14 40 40 H 1.07997 * 119.95324 * 180.25012 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 2.1271 -0.1063 2.1448 6 6 3.0741 -1.8314 1.0512 7 6 1.6356 -2.1853 1.4342 8 1 1.0066 -2.6351 0.6659 9 7 1.3953 -2.6531 2.8015 10 6 0.5845 -3.7073 3.0203 11 8 0.0522 -4.2697 2.0829 12 6 0.3418 -4.1784 4.3983 13 6 -0.5013 -5.2734 4.6232 14 6 -0.7280 -5.7123 5.8936 15 6 -0.1128 -5.0618 6.9815 16 6 -0.3447 -5.5121 8.2986 17 1 -1.2733 -6.0053 8.5449 18 6 0.6305 -5.3190 9.2875 19 7 0.2723 -5.1213 10.5283 20 14 2.4418 -5.3521 8.8322 21 1 2.9542 -6.7416 8.9408 22 1 2.6106 -4.8699 7.4379 23 1 3.2006 -4.4711 9.7559 24 6 0.7302 -3.9568 6.7506 25 6 0.9552 -3.5285 5.4762 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 3.8415 -1.9467 1.8167 34 1 3.3909 -2.0481 0.0310 35 1 1.8196 -2.2041 3.5493 36 1 -0.9721 -5.7716 3.7886 37 1 -1.3788 -6.5567 6.0662 38 1 -0.6668 -5.0309 10.7535 39 1 1.2006 -3.4524 7.5817 40 1 1.6044 -2.6841 5.2979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458112144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:03 Heat of formation + Delta-G solvation = -34.428951 kcal Electronic energy + Delta-G solvation = -20078.688684 eV Core-core repulsion = 17050.033442 eV Total energy + Delta-G solvation = -3028.655241 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99274 -39.51258 -38.60418 -35.80454 -35.32416 -33.27892 -32.02015 -31.51633 -28.00880 -27.47284 -24.24403 -23.72904 -23.03983 -22.53295 -21.46978 -20.68296 -20.14236 -18.61673 -17.50739 -16.45073 -16.24064 -15.86880 -15.68062 -15.60624 -15.57457 -15.05929 -14.43676 -14.30790 -14.05479 -13.98205 -13.65466 -13.38864 -13.23405 -13.01697 -12.88494 -12.67281 -12.23548 -12.13781 -12.05224 -11.82194 -11.77969 -11.58161 -11.32381 -11.03939 -10.99848 -10.72496 -9.81007 -9.59501 -9.55664 -9.36954 -6.65087 0.30821 0.94824 1.43391 1.50197 1.80462 2.02076 2.21184 2.24831 2.59809 2.96528 3.47947 3.73594 3.81602 4.02023 4.09410 4.17634 4.19821 4.30710 4.42702 4.48207 4.67987 4.73104 4.84160 4.85950 4.94344 4.97001 5.00505 5.04193 5.08155 5.22249 5.28813 5.32502 5.42762 5.44129 5.51687 5.59731 5.63352 5.75763 5.84012 6.01936 6.30896 6.53152 6.65840 6.72495 7.40059 7.76695 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.003781 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.661027 B = 7403.002061 C = 7818.664488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.140 4.140 4 C -0.139 4.139 5 H 0.113 0.887 6 C -0.175 4.175 7 C 0.061 3.939 8 H 0.112 0.888 9 N -0.695 5.695 10 C 0.575 3.425 11 O -0.603 6.603 12 C -0.288 4.288 13 C -0.026 4.026 14 C -0.245 4.245 15 C 0.094 3.906 16 C -0.538 4.538 17 H 0.057 0.943 18 C 0.028 3.972 19 N -0.801 5.801 20 Si 1.072 2.928 21 H -0.271 1.271 22 H -0.227 1.227 23 H -0.261 1.261 24 C -0.233 4.233 25 C -0.034 4.034 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.409 0.591 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.287 0.713 39 H 0.110 0.890 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.917 11.690 -14.024 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.197 4.197 4 C -0.158 4.158 5 H 0.131 0.869 6 C -0.213 4.213 7 C -0.045 4.045 8 H 0.130 0.870 9 N -0.345 5.345 10 C 0.368 3.632 11 O -0.487 6.487 12 C -0.292 4.292 13 C -0.045 4.045 14 C -0.264 4.264 15 C 0.091 3.909 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.192 4.192 19 N -0.420 5.420 20 Si 0.888 3.112 21 H -0.197 1.197 22 H -0.150 1.150 23 H -0.185 1.185 24 C -0.252 4.252 25 C -0.052 4.052 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.247 0.753 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.962 11.388 -13.919 20.093 hybrid contribution -2.270 -0.501 0.377 2.355 sum 6.692 10.886 -13.542 18.619 Atomic orbital electron populations 1.21821 0.95565 1.01075 1.01982 1.20720 0.95161 0.96819 0.95517 1.21771 1.01409 0.94361 1.02154 1.22971 1.02133 0.89925 1.00808 0.86870 1.23674 0.92086 1.01671 1.03908 1.21644 0.99511 0.98113 0.85231 0.86991 1.45139 1.48808 1.32232 1.08285 1.18352 0.77214 0.79023 0.88576 1.90622 1.53133 1.59097 1.45840 1.19191 1.12578 1.05678 0.91723 1.20545 0.94162 0.93867 0.95938 1.20827 1.09529 1.03691 0.92380 1.17985 0.90164 0.90130 0.92625 1.20752 1.04366 1.36131 0.95199 0.92518 1.28518 1.10860 0.88262 0.91607 1.70548 1.22517 1.27483 1.21466 0.83707 0.68485 0.79245 0.79727 1.19701 1.14965 1.18520 1.20796 1.07468 1.00306 0.96664 1.20735 0.95731 0.97242 0.91518 0.93062 0.91525 0.94311 0.90586 0.91860 0.92683 0.91891 0.87702 0.86999 0.75322 0.87628 0.88201 0.90188 0.87210 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.03 71.98 0.65 -2.03 16 2 C -0.06 -1.00 3.07 -10.80 -0.03 -1.04 16 3 C -0.14 -1.74 9.18 71.98 0.66 -1.08 16 4 C -0.14 -2.50 5.07 -10.80 -0.05 -2.56 16 5 H 0.11 1.89 8.11 -2.39 -0.02 1.87 16 6 C -0.17 -3.17 10.10 30.59 0.31 -2.86 16 7 C 0.06 1.53 5.64 44.99 0.25 1.78 16 8 H 0.11 3.33 6.87 -2.38 -0.02 3.32 16 9 N -0.69 -20.43 5.51 -445.59 -2.46 -22.88 16 10 C 0.57 22.51 7.76 86.72 0.67 23.18 16 11 O -0.60 -27.42 15.89 -3.97 -0.06 -27.48 16 12 C -0.29 -12.00 5.89 -19.93 -0.12 -12.11 16 13 C -0.03 -1.17 9.52 22.25 0.21 -0.96 16 14 C -0.25 -11.61 9.73 22.47 0.22 -11.40 16 15 C 0.09 4.59 5.04 -21.28 -0.11 4.49 16 16 C -0.54 -27.86 9.29 23.46 0.22 -27.65 16 17 H 0.06 3.13 8.06 -2.91 -0.02 3.11 16 18 C 0.03 1.38 5.13 85.35 0.44 1.81 16 19 N -0.80 -40.26 13.64 21.87 0.30 -39.96 16 20 Si 1.07 42.14 26.73 68.60 1.83 43.97 16 21 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 22 H -0.23 -8.50 5.27 99.48 0.52 -7.97 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 24 C -0.23 -10.14 6.71 22.47 0.15 -9.99 16 25 C -0.03 -1.29 9.47 22.25 0.21 -1.08 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.04 0.86 7.29 -2.38 -0.02 0.84 16 29 H 0.08 1.14 7.90 -2.39 -0.02 1.12 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.11 1.75 8.05 -2.38 -0.02 1.73 16 35 H 0.41 9.93 6.83 -92.71 -0.63 9.29 16 36 H 0.11 4.66 7.63 -2.91 -0.02 4.64 16 37 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 38 H 0.29 14.31 8.73 -92.71 -0.81 13.50 16 39 H 0.11 4.52 5.82 -2.91 -0.02 4.50 16 40 H 0.14 3.96 6.37 -2.91 -0.02 3.94 16 Total: -1.00 -59.74 330.46 3.48 -56.26 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.18 Total: 31.56 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 3.68 Total: -41.47 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -2.16 Total: -62.84 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.06 Total: -27.48 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.83 Total: 43.97 kcal Total: -59.74 3.48 -56.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458112144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.834 kcal (2) G-P(sol) polarization free energy of solvation -59.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds