Wall clock time and date at job start Mon Mar 30 2020 01:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47122 * 2 1 4 4 C 1.50696 * 109.47683 * 240.00526 * 2 1 3 5 5 H 1.08004 * 119.99757 * 241.36498 * 4 2 1 6 6 C 1.37872 * 120.00353 * 61.35203 * 4 2 1 7 7 N 1.31519 * 120.00285 * 193.96366 * 6 4 2 8 8 Si 1.86799 * 119.99817 * 13.97317 * 6 4 2 9 9 H 1.48496 * 109.47469 * 84.55213 * 8 6 4 10 10 H 1.48501 * 109.46918 * 204.55079 * 8 6 4 11 11 H 1.48503 * 109.47179 * 324.54845 * 8 6 4 12 12 C 1.53002 * 109.47132 * 119.99716 * 2 1 3 13 13 N 1.46894 * 109.46978 * 300.00358 * 12 2 1 14 14 C 1.46901 * 110.99926 * 179.97438 * 13 12 2 15 15 C 1.50697 * 109.47502 * 180.02562 * 14 13 12 16 16 C 1.34000 * 124.92499 * 90.62303 * 15 14 13 17 17 C 1.46790 * 106.18377 * 180.02562 * 16 15 14 18 18 C 1.39405 * 134.36852 * 179.30918 * 17 16 15 19 19 C 1.36739 * 119.71562 * 180.02562 * 18 17 16 20 20 C 1.38743 * 120.41534 * 0.02562 * 19 18 17 21 21 C 1.37849 * 120.68905 * 359.97438 * 20 19 18 22 22 C 1.38949 * 119.81506 * 0.27131 * 21 20 19 23 23 O 1.34454 * 124.91986 * 269.97612 * 15 14 13 24 24 H 1.08999 * 109.47660 * 309.31892 * 1 2 3 25 25 H 1.09008 * 109.46745 * 69.31614 * 1 2 3 26 26 H 1.08995 * 109.46678 * 189.30957 * 1 2 3 27 27 H 1.08997 * 109.47625 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46964 * 300.00056 * 3 2 1 29 29 H 1.09004 * 109.46688 * 59.99780 * 3 2 1 30 30 H 0.96996 * 120.00061 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47259 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.46606 * 60.00404 * 12 2 1 33 33 H 1.00894 * 111.00622 * 303.94990 * 13 12 2 34 34 H 1.09000 * 109.47030 * 60.00044 * 14 13 12 35 35 H 1.09004 * 109.47015 * 300.00613 * 14 13 12 36 36 H 1.08000 * 126.90818 * 359.37089 * 16 15 14 37 37 H 1.08000 * 120.14335 * 0.02842 * 18 17 16 38 38 H 1.07995 * 119.79411 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.66001 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.09406 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7103 -1.2305 5 1 2.6351 -1.6010 -1.1315 6 6 1.7227 -0.2231 -2.4825 7 7 1.9165 -0.9721 -3.5460 8 14 1.0279 1.5009 -2.6683 9 1 2.1419 2.4819 -2.7080 10 1 0.2475 1.5868 -3.9288 11 1 0.1418 1.8044 -1.5158 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4486 14 6 2.0208 -0.6951 3.6703 15 6 1.4991 0.0414 4.8771 16 6 0.3421 -0.2258 5.4980 17 6 0.2434 0.7297 6.6080 18 6 -0.7043 0.9769 7.6001 19 6 -0.4875 1.9728 8.5116 20 6 0.6686 2.7378 8.4544 21 6 1.6168 2.5080 7.4806 22 6 1.4136 1.5042 6.5416 23 8 2.1331 1.0539 5.4943 24 1 -0.3634 0.6511 0.7950 25 1 -0.3633 0.3630 -0.9615 26 1 -0.3632 -1.0141 0.1662 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6989 -0.6293 -4.4269 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7488 1.2492 33 1 1.8196 0.9436 2.4402 34 1 3.1107 -0.6953 3.6874 35 1 1.6571 -1.7225 3.6868 36 1 -0.3784 -0.9839 5.2289 37 1 -1.6060 0.3843 7.6485 38 1 -1.2206 2.1651 9.2809 39 1 0.8272 3.5216 9.1803 40 1 2.5135 3.1091 7.4453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459705194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:26 Heat of formation + Delta-G solvation = 43.398056 kcal Electronic energy + Delta-G solvation = -20359.056279 eV Core-core repulsion = 17333.775869 eV Total energy + Delta-G solvation = -3025.280409 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.49927 -38.09800 -37.34135 -34.49458 -32.73390 -31.60559 -30.54785 -29.65215 -26.35417 -26.16506 -25.04857 -23.53157 -22.90248 -21.77642 -21.01981 -18.85851 -17.45926 -16.88400 -16.33182 -16.03560 -15.93020 -15.28563 -14.95932 -14.36394 -13.99788 -13.81231 -13.38746 -13.14268 -12.93246 -12.60749 -12.42543 -12.40652 -12.17512 -12.03988 -11.94095 -11.74444 -11.11794 -10.91520 -10.35396 -10.25125 -10.05875 -10.01665 -9.84989 -8.99857 -8.76241 -8.59137 -8.39407 -8.26907 -8.00857 -6.09526 -4.05601 0.77771 1.21973 2.28869 2.62300 3.31159 3.40586 3.44570 3.57594 4.26555 4.42960 4.53840 4.72003 4.76111 4.99272 5.09108 5.12916 5.18493 5.23642 5.37554 5.56960 5.67204 5.73522 5.91332 6.05276 6.08943 6.11214 6.22445 6.26485 6.36327 6.40222 6.54231 6.55772 6.72453 6.79784 6.90625 7.02765 7.13055 7.33679 7.37486 7.54046 7.72303 7.86939 8.52413 8.94700 9.56498 11.03831 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.036261 B = 0.003509 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.995644 B = 7978.070453 C = 8152.001533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.041 3.959 3 C -0.151 4.151 4 C -0.514 4.514 5 H 0.072 0.928 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.288 1.288 10 H -0.306 1.306 11 H -0.246 1.246 12 C 0.084 3.916 13 N -0.685 5.685 14 C 0.131 3.869 15 C 0.047 3.953 16 C -0.192 4.192 17 C -0.127 4.127 18 C -0.072 4.072 19 C -0.140 4.140 20 C -0.100 4.100 21 C -0.107 4.107 22 C 0.050 3.950 23 O -0.195 6.195 24 H 0.032 0.968 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.342 0.658 34 H 0.047 0.953 35 H 0.105 0.895 36 H 0.159 0.841 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 5.003 22.893 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.040 3.960 3 C -0.208 4.208 4 C -0.552 4.552 5 H 0.090 0.910 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.717 3.283 9 H -0.216 1.216 10 H -0.235 1.235 11 H -0.172 1.172 12 C -0.044 4.044 13 N -0.318 5.318 14 C 0.002 3.998 15 C -0.001 4.001 16 C -0.212 4.212 17 C -0.128 4.128 18 C -0.090 4.090 19 C -0.158 4.158 20 C -0.118 4.118 21 C -0.126 4.126 22 C 0.003 3.997 23 O -0.096 6.096 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.161 0.839 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.177 0.823 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.207 4.744 22.598 23.312 hybrid contribution 0.535 1.175 -0.294 1.324 sum -2.672 5.919 22.304 23.230 Atomic orbital electron populations 1.22084 0.97349 0.99774 0.99330 1.18476 0.92994 0.91504 0.93002 1.22382 1.00414 0.99108 0.98860 1.20843 1.33739 1.12115 0.88469 0.90984 1.24968 0.94657 0.97326 0.95825 1.69960 1.48694 1.35984 0.98687 0.87315 0.79417 0.85547 0.76059 1.21582 1.23523 1.17156 1.22031 0.96365 0.98041 0.87970 1.60709 1.63698 1.06804 1.00609 1.20527 0.97920 0.96767 0.84584 1.22441 0.92946 0.89089 0.95585 1.22237 0.98916 1.03245 0.96833 1.20025 0.96203 0.98260 0.98349 1.20301 0.97971 0.97552 0.93207 1.20752 0.98204 0.96863 0.99958 1.20887 0.93504 0.99702 0.97708 1.19948 1.01335 0.97136 0.94137 1.19648 0.91581 0.98046 0.90436 1.83965 1.44937 1.43870 1.36864 0.94918 0.93696 0.94000 0.93456 0.94112 0.94779 0.92697 0.95589 0.91221 0.83929 0.93472 0.87710 0.82318 0.85586 0.85527 0.84987 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 7.55 37.16 0.28 -2.53 16 2 C 0.04 0.93 0.57 -155.66 -0.09 0.84 16 3 C -0.15 -3.21 7.37 37.16 0.27 -2.93 16 4 C -0.51 -13.99 8.62 -34.44 -0.30 -14.28 16 5 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 6 C 0.07 2.11 5.32 -17.82 -0.09 2.02 16 7 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 8 Si 0.88 21.91 22.79 -169.99 -3.87 18.03 16 9 H -0.29 -7.09 7.10 56.52 0.40 -6.69 16 10 H -0.31 -7.73 7.11 56.52 0.40 -7.33 16 11 H -0.25 -5.69 4.65 56.52 0.26 -5.42 16 12 C 0.08 1.58 4.57 -3.83 -0.02 1.56 16 13 N -0.69 -11.11 5.88 -115.06 -0.68 -11.79 16 14 C 0.13 1.76 6.19 -4.98 -0.03 1.73 16 15 C 0.05 0.65 6.74 -35.80 -0.24 0.41 16 16 C -0.19 -2.52 11.01 -37.62 -0.41 -2.94 16 17 C -0.13 -1.66 6.40 -105.16 -0.67 -2.33 16 18 C -0.07 -0.76 10.05 -39.69 -0.40 -1.16 16 19 C -0.14 -1.25 9.98 -39.94 -0.40 -1.65 16 20 C -0.10 -0.89 10.01 -39.54 -0.40 -1.28 16 21 C -0.11 -1.16 10.07 -39.46 -0.40 -1.55 16 22 C 0.05 0.68 7.42 -38.47 -0.29 0.40 16 23 O -0.19 -2.86 10.58 3.90 0.04 -2.82 16 24 H 0.03 0.66 7.88 -51.93 -0.41 0.25 16 25 H 0.04 1.04 4.30 -51.92 -0.22 0.82 16 26 H 0.04 0.89 8.12 -51.93 -0.42 0.47 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.92 2.25 -51.93 -0.12 0.81 16 29 H 0.03 0.63 6.57 -51.93 -0.34 0.29 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.34 5.60 6.76 -39.29 -0.27 5.33 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -30.67 317.11 -7.83 -38.51 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.70 Total: 3.45 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -3.18 Total: -23.70 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.10 Total: -38.25 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -3.87 Total: 18.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.67 -7.83 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459705194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.906 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds