Wall clock time and date at job start Mon Mar 30 2020 01:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47122 * 2 1 4 4 C 1.50696 * 109.47683 * 240.00526 * 2 1 3 5 5 H 1.08004 * 119.99757 * 241.36498 * 4 2 1 6 6 C 1.37872 * 120.00353 * 61.35203 * 4 2 1 7 7 N 1.31519 * 120.00285 * 193.96366 * 6 4 2 8 8 Si 1.86799 * 119.99817 * 13.97317 * 6 4 2 9 9 H 1.48496 * 109.47469 * 84.55213 * 8 6 4 10 10 H 1.48501 * 109.46918 * 204.55079 * 8 6 4 11 11 H 1.48503 * 109.47179 * 324.54845 * 8 6 4 12 12 C 1.53002 * 109.47132 * 119.99716 * 2 1 3 13 13 N 1.46894 * 109.46978 * 300.00358 * 12 2 1 14 14 C 1.46901 * 110.99926 * 179.97438 * 13 12 2 15 15 C 1.50697 * 109.47502 * 180.02562 * 14 13 12 16 16 C 1.34000 * 124.92499 * 90.62303 * 15 14 13 17 17 C 1.46790 * 106.18377 * 180.02562 * 16 15 14 18 18 C 1.39405 * 134.36852 * 179.30918 * 17 16 15 19 19 C 1.36739 * 119.71562 * 180.02562 * 18 17 16 20 20 C 1.38743 * 120.41534 * 0.02562 * 19 18 17 21 21 C 1.37849 * 120.68905 * 359.97438 * 20 19 18 22 22 C 1.38949 * 119.81506 * 0.27131 * 21 20 19 23 23 O 1.34454 * 124.91986 * 269.97612 * 15 14 13 24 24 H 1.08999 * 109.47660 * 309.31892 * 1 2 3 25 25 H 1.09008 * 109.46745 * 69.31614 * 1 2 3 26 26 H 1.08995 * 109.46678 * 189.30957 * 1 2 3 27 27 H 1.08997 * 109.47625 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46964 * 300.00056 * 3 2 1 29 29 H 1.09004 * 109.46688 * 59.99780 * 3 2 1 30 30 H 0.96996 * 120.00061 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47259 * 180.02562 * 12 2 1 32 32 H 1.08997 * 109.46606 * 60.00404 * 12 2 1 33 33 H 1.00894 * 111.00622 * 303.94990 * 13 12 2 34 34 H 1.09000 * 109.47030 * 60.00044 * 14 13 12 35 35 H 1.09004 * 109.47015 * 300.00613 * 14 13 12 36 36 H 1.08000 * 126.90818 * 359.37089 * 16 15 14 37 37 H 1.08000 * 120.14335 * 0.02842 * 18 17 16 38 38 H 1.07995 * 119.79411 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.66001 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.09406 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7103 -1.2305 5 1 2.6351 -1.6010 -1.1315 6 6 1.7227 -0.2231 -2.4825 7 7 1.9165 -0.9721 -3.5460 8 14 1.0279 1.5009 -2.6683 9 1 2.1419 2.4819 -2.7080 10 1 0.2475 1.5868 -3.9288 11 1 0.1418 1.8044 -1.5158 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4486 14 6 2.0208 -0.6951 3.6703 15 6 1.4991 0.0414 4.8771 16 6 0.3421 -0.2258 5.4980 17 6 0.2434 0.7297 6.6080 18 6 -0.7043 0.9769 7.6001 19 6 -0.4875 1.9728 8.5116 20 6 0.6686 2.7378 8.4544 21 6 1.6168 2.5080 7.4806 22 6 1.4136 1.5042 6.5416 23 8 2.1331 1.0539 5.4943 24 1 -0.3634 0.6511 0.7950 25 1 -0.3633 0.3630 -0.9615 26 1 -0.3632 -1.0141 0.1662 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6989 -0.6293 -4.4269 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7488 1.2492 33 1 1.8196 0.9436 2.4402 34 1 3.1107 -0.6953 3.6874 35 1 1.6571 -1.7225 3.6868 36 1 -0.3784 -0.9839 5.2289 37 1 -1.6060 0.3843 7.6485 38 1 -1.2206 2.1651 9.2809 39 1 0.8272 3.5216 9.1803 40 1 2.5135 3.1091 7.4453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459705194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:25 Heat of formation + Delta-G solvation = 24.080679 kcal Electronic energy + Delta-G solvation = -20359.893943 eV Core-core repulsion = 17333.775869 eV Total energy + Delta-G solvation = -3026.118073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.41507 -39.12249 -38.70368 -35.94988 -33.97769 -33.34364 -31.33587 -30.71291 -27.99109 -27.46042 -27.03349 -24.93162 -23.80189 -22.63330 -21.96018 -20.64614 -18.32215 -18.15257 -17.77765 -17.46112 -17.14625 -16.70156 -16.09615 -15.37339 -15.24323 -15.01193 -14.79586 -14.61659 -14.36651 -14.01603 -13.84559 -13.74487 -13.45759 -13.25938 -13.18573 -12.79988 -12.50255 -12.29818 -11.97046 -11.89539 -11.81424 -11.60855 -11.08659 -10.96208 -10.57266 -10.35245 -9.59494 -9.39000 -9.08821 -8.29370 -6.28232 -0.04577 0.41438 1.34618 1.34940 1.38939 1.48856 1.71853 2.35490 2.79268 3.07677 3.28537 3.50778 3.74871 4.06621 4.14791 4.17574 4.25416 4.27577 4.41112 4.43397 4.52032 4.55402 4.64576 4.77132 4.83478 4.86956 4.96637 5.02524 5.09981 5.15449 5.25965 5.30281 5.36724 5.50297 5.52901 5.59388 5.73146 5.79212 5.85207 6.03221 6.21744 6.31250 6.43700 6.77972 7.37259 8.87704 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.036261 B = 0.003509 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.995644 B = 7978.070453 C = 8152.001533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.035 3.965 3 C -0.149 4.149 4 C -0.512 4.512 5 H 0.034 0.966 6 C 0.018 3.982 7 N -0.947 5.947 8 Si 0.939 3.061 9 H -0.284 1.284 10 H -0.315 1.315 11 H -0.215 1.215 12 C 0.097 3.903 13 N -0.683 5.683 14 C 0.136 3.864 15 C 0.027 3.973 16 C -0.192 4.192 17 C -0.153 4.153 18 C -0.083 4.083 19 C -0.136 4.136 20 C -0.090 4.090 21 C -0.123 4.123 22 C 0.021 3.979 23 O -0.213 6.213 24 H 0.054 0.946 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.263 0.737 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.342 0.658 34 H 0.052 0.948 35 H 0.118 0.882 36 H 0.172 0.828 37 H 0.144 0.856 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 6.993 26.004 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.034 3.966 3 C -0.206 4.206 4 C -0.550 4.550 5 H 0.052 0.948 6 C -0.179 4.179 7 N -0.587 5.587 8 Si 0.770 3.230 9 H -0.212 1.212 10 H -0.245 1.245 11 H -0.139 1.139 12 C -0.032 4.032 13 N -0.315 5.315 14 C 0.007 3.993 15 C -0.020 4.020 16 C -0.212 4.212 17 C -0.154 4.154 18 C -0.101 4.101 19 C -0.153 4.153 20 C -0.108 4.108 21 C -0.141 4.141 22 C -0.026 4.026 23 O -0.116 6.116 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.161 0.839 34 H 0.070 0.930 35 H 0.136 0.864 36 H 0.189 0.811 37 H 0.162 0.838 38 H 0.178 0.822 39 H 0.185 0.815 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.576 6.739 25.751 27.009 hybrid contribution 0.968 0.510 -1.090 1.545 sum -3.608 7.249 24.661 25.957 Atomic orbital electron populations 1.21991 0.96593 1.00174 0.99236 1.18472 0.93487 0.92293 0.92310 1.22311 1.00561 0.98007 0.99717 1.21198 1.32249 1.10959 0.90621 0.94764 1.25766 0.95531 1.01066 0.95543 1.70102 1.51235 1.38076 0.99300 0.86407 0.79296 0.80804 0.76502 1.21164 1.24499 1.13924 1.21705 0.95953 0.97567 0.87968 1.60612 1.63687 1.06702 1.00534 1.20520 0.98258 0.97129 0.83351 1.22397 0.93560 0.89852 0.96171 1.22509 0.98711 1.03240 0.96714 1.20310 0.97062 0.98702 0.99346 1.20654 0.98168 0.98334 0.92900 1.21216 0.98702 0.95617 0.99812 1.21382 0.92551 0.99744 0.97119 1.20341 1.02642 0.96938 0.94192 1.20167 0.92111 0.99336 0.90986 1.83910 1.45704 1.44354 1.37640 0.92674 0.95117 0.94232 0.93442 0.95224 0.91677 0.92825 0.96019 0.91707 0.83916 0.92994 0.86377 0.81087 0.83815 0.82249 0.81529 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 7.55 71.98 0.54 -4.61 16 2 C 0.04 1.55 0.57 -52.93 -0.03 1.52 16 3 C -0.15 -6.01 7.37 71.98 0.53 -5.48 16 4 C -0.51 -28.38 8.62 25.60 0.22 -28.16 16 5 H 0.03 2.10 7.99 -2.91 -0.02 2.07 16 6 C 0.02 1.04 5.32 84.65 0.45 1.49 16 7 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 8 Si 0.94 45.08 22.79 68.60 1.56 46.65 16 9 H -0.28 -13.35 7.10 99.48 0.71 -12.64 16 10 H -0.32 -15.49 7.11 99.48 0.71 -14.78 16 11 H -0.22 -9.23 4.65 99.48 0.46 -8.76 16 12 C 0.10 3.57 4.57 86.31 0.39 3.97 16 13 N -0.68 -20.99 5.88 -517.95 -3.05 -24.04 16 14 C 0.14 3.50 6.19 85.56 0.53 4.03 16 15 C 0.03 0.74 6.74 24.72 0.17 0.91 16 16 C -0.19 -4.83 11.01 23.54 0.26 -4.57 16 17 C -0.15 -3.79 6.40 -20.21 -0.13 -3.92 16 18 C -0.08 -1.54 10.05 22.20 0.22 -1.32 16 19 C -0.14 -1.93 9.98 22.04 0.22 -1.71 16 20 C -0.09 -1.28 10.01 22.30 0.22 -1.06 16 21 C -0.12 -2.41 10.07 22.35 0.23 -2.19 16 22 C 0.02 0.55 7.42 22.99 0.17 0.72 16 23 O -0.21 -6.19 10.58 -8.96 -0.09 -6.29 16 24 H 0.05 2.06 7.88 -2.39 -0.02 2.04 16 25 H 0.03 1.35 4.30 -2.38 -0.01 1.34 16 26 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.03 1.26 2.25 -2.39 -0.01 1.26 16 29 H 0.06 2.21 6.57 -2.39 -0.02 2.20 16 30 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.34 10.48 6.76 -89.70 -0.61 9.88 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 35 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 36 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 40 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -67.83 317.11 2.91 -64.92 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.19 Total: 18.28 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 4.00 Total: -40.37 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -2.75 Total: -83.19 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.09 Total: -6.29 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.56 Total: 46.65 kcal Total: -67.83 2.91 -64.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459705194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.003 kcal (2) G-P(sol) polarization free energy of solvation -67.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds