Wall clock time and date at job start Mon Mar 30 2020 01:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47546 * 2 1 4 4 C 1.50704 * 109.46725 * 239.99767 * 2 1 3 5 5 H 1.07998 * 120.00074 * 241.23935 * 4 2 1 6 6 C 1.37879 * 120.00122 * 61.24628 * 4 2 1 7 7 N 1.31509 * 120.00202 * 194.10973 * 6 4 2 8 8 Si 1.86799 * 119.99728 * 14.10800 * 6 4 2 9 9 H 1.48499 * 109.47430 * 84.53503 * 8 6 4 10 10 H 1.48506 * 109.47005 * 204.53455 * 8 6 4 11 11 H 1.48498 * 109.47420 * 324.53320 * 8 6 4 12 12 C 1.53004 * 109.47321 * 120.00133 * 2 1 3 13 13 N 1.46902 * 109.46646 * 299.99709 * 12 2 1 14 14 C 1.46906 * 110.99418 * 179.97438 * 13 12 2 15 15 C 1.50702 * 109.46697 * 180.02562 * 14 13 12 16 16 C 1.38738 * 119.79504 * 89.99927 * 15 14 13 17 17 C 1.37848 * 120.68912 * 179.97438 * 16 15 14 18 18 C 1.38940 * 119.81628 * 0.02562 * 17 16 15 19 19 O 1.34813 * 133.49415 * 180.02562 * 18 17 16 20 20 C 1.34448 * 110.88699 * 179.97438 * 19 18 17 21 21 C 1.33997 * 110.15419 * 0.02562 * 20 19 18 22 22 C 1.40491 * 119.22456 * 0.02562 * 18 17 16 23 23 C 1.36744 * 119.79150 * 270.02051 * 15 14 13 24 24 H 1.09005 * 109.46612 * 309.51797 * 1 2 3 25 25 H 1.09002 * 109.47261 * 69.51198 * 1 2 3 26 26 H 1.08996 * 109.47437 * 189.51849 * 1 2 3 27 27 H 1.08998 * 109.47594 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.47130 * 300.00116 * 3 2 1 29 29 H 1.09003 * 109.47189 * 59.99981 * 3 2 1 30 30 H 0.96995 * 120.00459 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47081 * 179.97438 * 12 2 1 32 32 H 1.08997 * 109.46890 * 59.99473 * 12 2 1 33 33 H 1.00900 * 110.99972 * 56.05111 * 13 12 2 34 34 H 1.08998 * 109.47122 * 60.00556 * 14 13 12 35 35 H 1.08995 * 109.47280 * 299.99685 * 14 13 12 36 36 H 1.08004 * 119.65595 * 359.97438 * 16 15 14 37 37 H 1.08000 * 120.09094 * 179.97438 * 17 16 15 38 38 H 1.07997 * 124.92137 * 179.97438 * 20 19 18 39 39 H 1.08007 * 126.90341 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.13737 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6365 -1.6001 -1.1315 6 6 1.7204 -0.2247 -2.4826 7 7 1.9115 -0.9752 -3.5455 8 14 1.0265 1.4996 -2.6692 9 1 2.1412 2.4799 -2.7119 10 1 0.2441 1.5847 -3.9286 11 1 0.1426 1.8050 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0287 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.4994 0.0414 4.8771 16 6 0.2777 -0.3167 5.4286 17 6 -0.2166 0.3443 6.5326 18 6 0.5132 1.3808 7.1014 19 8 0.3021 2.1951 8.1549 20 6 1.3234 3.0562 8.3073 21 6 2.2493 2.8463 7.3617 22 6 1.7491 1.7394 6.5377 23 6 2.2330 1.0590 5.4215 24 1 -0.3633 0.6540 0.7928 25 1 -0.3634 0.3597 -0.9627 26 1 -0.3634 -1.0135 0.1699 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6918 -0.6336 -4.4263 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7489 1.2492 33 1 0.5438 0.0413 2.4402 34 1 3.1108 -0.6954 3.6873 35 1 1.6571 -1.7225 3.6869 36 1 -0.2919 -1.1217 4.9883 37 1 -1.1689 0.0578 6.9538 38 1 1.3878 3.8084 9.0795 39 1 3.1774 3.3834 7.2322 40 1 3.1835 1.3340 4.9886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459725542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:32 Heat of formation + Delta-G solvation = 42.073937 kcal Electronic energy + Delta-G solvation = -20397.835109 eV Core-core repulsion = 17372.497282 eV Total energy + Delta-G solvation = -3025.337827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.51569 -38.58556 -37.02331 -34.11460 -32.89179 -31.73336 -30.35174 -29.41134 -26.20736 -26.05605 -24.99757 -23.46647 -22.96605 -21.42618 -21.22861 -18.77048 -17.56817 -17.13077 -16.20582 -16.10751 -15.87181 -15.24420 -14.58540 -14.25830 -14.14472 -13.91446 -13.25301 -13.16778 -12.83238 -12.77987 -12.62513 -12.20336 -12.04136 -11.84237 -11.83035 -11.57750 -10.93377 -10.87438 -10.32936 -10.28071 -10.05223 -9.99048 -9.84258 -8.95963 -8.61215 -8.53120 -8.35194 -8.31640 -7.87477 -6.07072 -4.02736 0.83937 1.26897 2.23932 2.66544 3.34396 3.43951 3.47081 3.60872 4.31339 4.45704 4.56148 4.69264 4.91649 5.00765 5.11315 5.24731 5.26508 5.32160 5.43646 5.60252 5.78464 5.82130 6.00462 6.10815 6.12237 6.16215 6.28536 6.32700 6.50543 6.54160 6.59909 6.65607 6.68672 6.86007 6.95144 7.03519 7.04950 7.37717 7.49812 7.59531 7.80321 7.95196 8.56018 8.97613 9.59302 11.06322 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034148 B = 0.003603 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.764463 B = 7770.240996 C = 8003.125795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 C -0.135 4.135 4 C -0.513 4.513 5 H 0.071 0.929 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.888 3.112 9 H -0.287 1.287 10 H -0.309 1.309 11 H -0.248 1.248 12 C 0.084 3.916 13 N -0.685 5.685 14 C 0.098 3.902 15 C -0.089 4.089 16 C -0.085 4.085 17 C -0.110 4.110 18 C 0.045 3.955 19 O -0.199 6.199 20 C -0.001 4.001 21 C -0.207 4.207 22 C -0.134 4.134 23 C -0.048 4.048 24 H 0.027 0.973 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.029 0.971 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.338 0.662 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.205 0.795 39 H 0.157 0.843 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 5.248 22.671 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.039 3.961 3 C -0.192 4.192 4 C -0.551 4.551 5 H 0.089 0.911 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.721 3.279 9 H -0.215 1.215 10 H -0.238 1.238 11 H -0.174 1.174 12 C -0.044 4.044 13 N -0.317 5.317 14 C -0.031 4.031 15 C -0.090 4.090 16 C -0.103 4.103 17 C -0.128 4.128 18 C -0.002 4.002 19 O -0.101 6.101 20 C -0.066 4.066 21 C -0.226 4.226 22 C -0.135 4.135 23 C -0.067 4.067 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.156 0.844 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.222 0.778 39 H 0.174 0.826 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.768 5.646 22.619 23.379 hybrid contribution -0.642 0.300 -0.335 0.784 sum -2.410 5.946 22.283 23.189 Atomic orbital electron populations 1.22293 0.98581 0.99107 1.00125 1.18465 0.91844 0.92594 0.93154 1.22161 1.00360 0.98140 0.98494 1.20871 1.33582 1.12087 0.88547 0.91082 1.24980 0.94743 0.97333 0.95822 1.69961 1.48821 1.35989 0.98709 0.87254 0.79380 0.85574 0.75694 1.21509 1.23777 1.17409 1.21985 0.99499 0.94550 0.88395 1.60674 1.16429 1.53721 1.00877 1.20857 1.00409 0.94266 0.87594 1.19528 0.94873 0.97330 0.97232 1.20886 0.95456 0.99355 0.94622 1.19852 1.00347 0.95099 0.97531 1.19646 0.96270 0.95030 0.89226 1.83983 1.42578 1.40243 1.43263 1.23905 0.86612 0.94985 1.01077 1.22543 1.02148 1.00415 0.97529 1.19965 0.95788 0.98960 0.98793 1.20172 0.99988 0.93634 0.92908 0.95409 0.92807 0.94203 0.93650 0.95228 0.93780 0.92747 0.91717 0.95860 0.84350 0.90348 0.94625 0.84913 0.85228 0.77797 0.82563 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 7.24 37.16 0.27 -2.80 16 2 C 0.04 0.92 0.57 -155.66 -0.09 0.83 16 3 C -0.13 -2.98 7.54 37.16 0.28 -2.70 16 4 C -0.51 -14.11 8.62 -34.44 -0.30 -14.41 16 5 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 6 C 0.07 2.09 5.32 -17.82 -0.09 2.00 16 7 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 8 Si 0.89 22.19 22.79 -169.99 -3.87 18.32 16 9 H -0.29 -7.18 7.10 56.52 0.40 -6.78 16 10 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 11 H -0.25 -5.77 4.65 56.52 0.26 -5.50 16 12 C 0.08 1.62 4.57 -3.82 -0.02 1.60 16 13 N -0.69 -11.08 5.71 -115.05 -0.66 -11.74 16 14 C 0.10 1.31 5.80 -4.97 -0.03 1.28 16 15 C -0.09 -1.12 5.36 -104.98 -0.56 -1.69 16 16 C -0.08 -0.97 9.66 -39.54 -0.38 -1.35 16 17 C -0.11 -1.25 10.07 -39.46 -0.40 -1.64 16 18 C 0.05 0.57 7.42 -38.47 -0.29 0.29 16 19 O -0.20 -2.32 10.58 3.90 0.04 -2.28 16 20 C 0.00 -0.01 11.96 29.24 0.35 0.34 16 21 C -0.21 -2.09 11.14 -37.62 -0.42 -2.51 16 22 C -0.13 -1.70 6.40 -105.16 -0.67 -2.37 16 23 C -0.05 -0.62 9.68 -39.69 -0.38 -1.00 16 24 H 0.03 0.52 7.06 -51.93 -0.37 0.15 16 25 H 0.05 1.23 4.30 -51.93 -0.22 1.01 16 26 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.69 2.26 -51.92 -0.12 0.57 16 29 H 0.04 0.89 7.60 -51.93 -0.39 0.49 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.34 5.37 6.99 -39.29 -0.27 5.10 16 34 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.21 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 40 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 316.72 15.07 4.77 4.77 Total: -1.00 -31.36 316.72 -7.39 -38.75 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.71 Total: 2.97 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -2.73 Total: -24.13 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.12 Total: -38.40 kcal Atomic # 8 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -3.87 Total: 18.32 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.36 -7.39 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459725542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.821 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds