Wall clock time and date at job start Mon Mar 30 2020 01:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47546 * 2 1 4 4 C 1.50704 * 109.46725 * 239.99767 * 2 1 3 5 5 H 1.07998 * 120.00074 * 241.23935 * 4 2 1 6 6 C 1.37879 * 120.00122 * 61.24628 * 4 2 1 7 7 N 1.31509 * 120.00202 * 194.10973 * 6 4 2 8 8 Si 1.86799 * 119.99728 * 14.10800 * 6 4 2 9 9 H 1.48499 * 109.47430 * 84.53503 * 8 6 4 10 10 H 1.48506 * 109.47005 * 204.53455 * 8 6 4 11 11 H 1.48498 * 109.47420 * 324.53320 * 8 6 4 12 12 C 1.53004 * 109.47321 * 120.00133 * 2 1 3 13 13 N 1.46902 * 109.46646 * 299.99709 * 12 2 1 14 14 C 1.46906 * 110.99418 * 179.97438 * 13 12 2 15 15 C 1.50702 * 109.46697 * 180.02562 * 14 13 12 16 16 C 1.38738 * 119.79504 * 89.99927 * 15 14 13 17 17 C 1.37848 * 120.68912 * 179.97438 * 16 15 14 18 18 C 1.38940 * 119.81628 * 0.02562 * 17 16 15 19 19 O 1.34813 * 133.49415 * 180.02562 * 18 17 16 20 20 C 1.34448 * 110.88699 * 179.97438 * 19 18 17 21 21 C 1.33997 * 110.15419 * 0.02562 * 20 19 18 22 22 C 1.40491 * 119.22456 * 0.02562 * 18 17 16 23 23 C 1.36744 * 119.79150 * 270.02051 * 15 14 13 24 24 H 1.09005 * 109.46612 * 309.51797 * 1 2 3 25 25 H 1.09002 * 109.47261 * 69.51198 * 1 2 3 26 26 H 1.08996 * 109.47437 * 189.51849 * 1 2 3 27 27 H 1.08998 * 109.47594 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.47130 * 300.00116 * 3 2 1 29 29 H 1.09003 * 109.47189 * 59.99981 * 3 2 1 30 30 H 0.96995 * 120.00459 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47081 * 179.97438 * 12 2 1 32 32 H 1.08997 * 109.46890 * 59.99473 * 12 2 1 33 33 H 1.00900 * 110.99972 * 56.05111 * 13 12 2 34 34 H 1.08998 * 109.47122 * 60.00556 * 14 13 12 35 35 H 1.08995 * 109.47280 * 299.99685 * 14 13 12 36 36 H 1.08004 * 119.65595 * 359.97438 * 16 15 14 37 37 H 1.08000 * 120.09094 * 179.97438 * 17 16 15 38 38 H 1.07997 * 124.92137 * 179.97438 * 20 19 18 39 39 H 1.08007 * 126.90341 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.13737 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6365 -1.6001 -1.1315 6 6 1.7204 -0.2247 -2.4826 7 7 1.9115 -0.9752 -3.5455 8 14 1.0265 1.4996 -2.6692 9 1 2.1412 2.4799 -2.7119 10 1 0.2441 1.5847 -3.9286 11 1 0.1426 1.8050 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0287 2.4487 14 6 2.0210 -0.6952 3.6703 15 6 1.4994 0.0414 4.8771 16 6 0.2777 -0.3167 5.4286 17 6 -0.2166 0.3443 6.5326 18 6 0.5132 1.3808 7.1014 19 8 0.3021 2.1951 8.1549 20 6 1.3234 3.0562 8.3073 21 6 2.2493 2.8463 7.3617 22 6 1.7491 1.7394 6.5377 23 6 2.2330 1.0590 5.4215 24 1 -0.3633 0.6540 0.7928 25 1 -0.3634 0.3597 -0.9627 26 1 -0.3634 -1.0135 0.1699 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6918 -0.6336 -4.4263 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7489 1.2492 33 1 0.5438 0.0413 2.4402 34 1 3.1108 -0.6954 3.6873 35 1 1.6571 -1.7225 3.6869 36 1 -0.2919 -1.1217 4.9883 37 1 -1.1689 0.0578 6.9538 38 1 1.3878 3.8084 9.0795 39 1 3.1774 3.3834 7.2322 40 1 3.1835 1.3340 4.9886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459725542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:31 Heat of formation + Delta-G solvation = 22.049036 kcal Electronic energy + Delta-G solvation = -20398.703454 eV Core-core repulsion = 17372.497282 eV Total energy + Delta-G solvation = -3026.206172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.31678 -39.61527 -38.54582 -35.56365 -33.76002 -33.61533 -31.50461 -30.22844 -27.92523 -27.35486 -26.99007 -24.83730 -23.86486 -22.20791 -22.17837 -20.58709 -18.38752 -18.12098 -17.87590 -17.40894 -17.02077 -16.83912 -15.70862 -15.38481 -15.22822 -15.06860 -14.83556 -14.67001 -14.22819 -13.99639 -13.82119 -13.68572 -13.55843 -13.30096 -12.99147 -12.69562 -12.41928 -12.26446 -11.90857 -11.87892 -11.73398 -11.59927 -11.12295 -10.92805 -10.56146 -10.30979 -9.53585 -9.17201 -9.13124 -8.28577 -6.27172 0.02448 0.35068 1.36839 1.39713 1.49380 1.50367 1.92525 2.36492 2.68981 3.08878 3.50102 3.59200 3.78682 3.94243 4.14852 4.23820 4.34270 4.38195 4.44976 4.49718 4.59596 4.69094 4.71524 4.83646 4.87970 4.94242 4.98532 5.00525 5.10810 5.22881 5.25993 5.29700 5.32254 5.52593 5.60273 5.65680 5.70929 5.76819 5.87147 6.17480 6.23842 6.36224 6.58793 6.80161 7.38249 8.88623 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034148 B = 0.003603 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.764463 B = 7770.240996 C = 8003.125795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 C -0.131 4.131 4 C -0.513 4.513 5 H 0.031 0.969 6 C 0.017 3.983 7 N -0.948 5.948 8 Si 0.943 3.057 9 H -0.287 1.287 10 H -0.316 1.316 11 H -0.214 1.214 12 C 0.097 3.903 13 N -0.682 5.682 14 C 0.102 3.898 15 C -0.096 4.096 16 C -0.089 4.089 17 C -0.111 4.111 18 C 0.023 3.977 19 O -0.210 6.210 20 C 0.011 3.989 21 C -0.228 4.228 22 C -0.153 4.153 23 C -0.063 4.063 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.020 0.980 29 H 0.068 0.932 30 H 0.263 0.737 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.343 0.657 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.250 0.750 39 H 0.176 0.824 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.243 7.069 25.270 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.034 3.966 3 C -0.187 4.187 4 C -0.551 4.551 5 H 0.049 0.951 6 C -0.180 4.180 7 N -0.588 5.588 8 Si 0.773 3.227 9 H -0.214 1.214 10 H -0.246 1.246 11 H -0.138 1.138 12 C -0.032 4.032 13 N -0.314 5.314 14 C -0.027 4.027 15 C -0.096 4.096 16 C -0.108 4.108 17 C -0.129 4.129 18 C -0.024 4.024 19 O -0.112 6.112 20 C -0.053 4.053 21 C -0.247 4.247 22 C -0.154 4.154 23 C -0.082 4.082 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.162 0.838 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.266 0.734 39 H 0.193 0.807 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.971 7.470 25.260 26.508 hybrid contribution -0.202 -0.325 -1.029 1.098 sum -3.173 7.145 24.231 25.461 Atomic orbital electron populations 1.22195 0.97078 1.00147 1.00336 1.18474 0.92975 0.92884 0.92300 1.22092 1.00088 0.97449 0.99093 1.21234 1.32160 1.10902 0.90793 0.95067 1.25778 0.95609 1.01075 0.95510 1.70103 1.51312 1.38087 0.99333 0.86357 0.79248 0.80685 0.76369 1.21434 1.24591 1.13806 1.21650 0.98827 0.94022 0.88655 1.60577 1.16701 1.53567 1.00587 1.20836 1.00450 0.94702 0.86675 1.19470 0.95560 0.97529 0.97068 1.21087 0.95155 0.99819 0.94698 1.20150 1.00997 0.94502 0.97239 1.19978 0.96724 0.95825 0.89877 1.83990 1.43650 1.40586 1.42980 1.24794 0.85061 0.94270 1.01130 1.22877 1.03545 1.00457 0.97819 1.20322 0.96260 0.99814 0.99028 1.20278 1.00294 0.94136 0.93470 0.92216 0.94393 0.93885 0.94238 0.96130 0.91334 0.92850 0.92682 0.96537 0.83840 0.90389 0.93622 0.83101 0.83171 0.73406 0.80693 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 7.24 71.98 0.52 -5.10 16 2 C 0.03 1.53 0.57 -52.93 -0.03 1.50 16 3 C -0.13 -5.46 7.54 71.98 0.54 -4.92 16 4 C -0.51 -28.66 8.62 25.60 0.22 -28.44 16 5 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 6 C 0.02 1.00 5.32 84.66 0.45 1.45 16 7 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 8 Si 0.94 45.45 22.79 68.60 1.56 47.01 16 9 H -0.29 -13.69 7.10 99.48 0.71 -12.98 16 10 H -0.32 -15.53 7.11 99.48 0.71 -14.82 16 11 H -0.21 -9.12 4.65 99.48 0.46 -8.66 16 12 C 0.10 3.65 4.57 86.30 0.39 4.05 16 13 N -0.68 -20.54 5.71 -517.92 -2.96 -23.50 16 14 C 0.10 2.55 5.80 85.56 0.50 3.05 16 15 C -0.10 -2.26 5.36 -20.09 -0.11 -2.36 16 16 C -0.09 -1.85 9.66 22.30 0.22 -1.63 16 17 C -0.11 -2.29 10.07 22.35 0.23 -2.06 16 18 C 0.02 0.54 7.42 22.99 0.17 0.71 16 19 O -0.21 -4.45 10.58 -8.96 -0.09 -4.54 16 20 C 0.01 0.17 11.96 66.85 0.80 0.97 16 21 C -0.23 -4.13 11.14 23.54 0.26 -3.87 16 22 C -0.15 -3.67 6.40 -20.22 -0.13 -3.79 16 23 C -0.06 -1.54 9.68 22.20 0.21 -1.32 16 24 H 0.06 2.01 7.06 -2.38 -0.02 1.99 16 25 H 0.04 1.63 4.30 -2.39 -0.01 1.62 16 26 H 0.04 1.67 8.12 -2.39 -0.02 1.65 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.02 0.89 2.26 -2.38 -0.01 0.89 16 29 H 0.07 2.53 7.60 -2.39 -0.02 2.51 16 30 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.34 9.83 6.99 -89.69 -0.63 9.20 16 34 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 35 H 0.05 1.07 8.08 -2.39 -0.02 1.05 16 36 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.25 1.05 8.06 -2.91 -0.02 1.03 16 39 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -68.87 316.72 3.23 -65.64 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.17 Total: 16.63 kcal Atomic # 6 Polarization: -46.02 SS G_CDS: 4.25 Total: -41.78 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -2.66 Total: -82.96 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.09 Total: -4.54 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.56 Total: 47.01 kcal Total: -68.87 3.23 -65.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459725542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.692 kcal (2) G-P(sol) polarization free energy of solvation -68.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds