Wall clock time and date at job start Mon Mar 30 2020 01:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47718 * 2 1 4 4 C 1.50704 * 109.46884 * 239.99874 * 2 1 3 5 5 H 1.07998 * 120.00200 * 240.00506 * 4 2 1 6 6 C 1.37875 * 119.99708 * 60.00320 * 4 2 1 7 7 N 1.31509 * 120.00164 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99721 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47367 * 60.00196 * 8 6 4 10 10 H 1.48500 * 109.46721 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47109 * 299.99640 * 8 6 4 12 12 C 1.52999 * 109.47084 * 120.00309 * 2 1 3 13 13 N 1.46895 * 109.47243 * 299.99735 * 12 2 1 14 14 C 1.46900 * 111.00327 * 180.02562 * 13 12 2 15 15 C 1.50696 * 109.47116 * 180.02562 * 14 13 12 16 16 C 1.33997 * 126.90582 * 260.01994 * 15 14 13 17 17 O 1.34450 * 110.15507 * 179.97438 * 16 15 14 18 18 C 1.34804 * 110.89096 * 0.02562 * 17 16 15 19 19 C 1.38938 * 133.49830 * 180.02562 * 18 17 16 20 20 C 1.37855 * 119.81787 * 179.97438 * 19 18 17 21 21 C 1.38741 * 120.68496 * 0.02562 * 20 19 18 22 22 C 1.36738 * 120.41799 * 359.97438 * 21 20 19 23 23 C 1.39402 * 119.71562 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.46495 * 299.99997 * 1 2 3 25 25 H 1.08999 * 109.47039 * 59.99779 * 1 2 3 26 26 H 1.08997 * 109.47619 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47596 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47046 * 300.00217 * 3 2 1 29 29 H 1.09000 * 109.46735 * 60.00045 * 3 2 1 30 30 H 0.97009 * 120.00099 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47099 * 179.97438 * 12 2 1 32 32 H 1.09005 * 109.47270 * 60.00054 * 12 2 1 33 33 H 1.00896 * 110.99951 * 303.95252 * 13 12 2 34 34 H 1.08994 * 109.47418 * 59.99417 * 14 13 12 35 35 H 1.09001 * 109.46733 * 299.99999 * 14 13 12 36 36 H 1.08004 * 124.92306 * 359.96157 * 16 15 14 37 37 H 1.07999 * 120.09186 * 0.22478 * 19 18 17 38 38 H 1.08004 * 119.65488 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.79097 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.13846 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3212 -1.1204 -4.0080 9 1 1.8256 -2.5202 -4.0078 10 1 1.8268 -0.4199 -5.2204 11 1 3.8062 -1.1210 -4.0083 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0289 2.4486 14 6 2.0219 -0.6947 3.6703 15 6 1.5003 0.0419 4.8771 16 6 2.1689 0.9237 5.6326 17 8 1.3806 1.3767 6.6231 18 6 0.1584 0.8112 6.5616 19 6 -0.9925 0.9352 7.3299 20 6 -2.1151 0.2037 7.0058 21 6 -2.1092 -0.6579 5.9184 22 6 -0.9869 -0.7945 5.1494 23 6 0.1580 -0.0630 5.4617 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4423 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 0.7087 1.1613 -3.4844 31 1 3.1300 -0.7217 1.2490 32 1 1.6767 -1.7490 1.2492 33 1 1.8199 0.9434 2.4402 34 1 3.1117 -0.6943 3.6868 35 1 1.6587 -1.7223 3.6872 36 1 3.1928 1.2265 5.4698 37 1 -1.0089 1.6058 8.1763 38 1 -3.0083 0.3018 7.6051 39 1 -2.9968 -1.2243 5.6777 40 1 -0.9874 -1.4662 4.3037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459738001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:51 Heat of formation + Delta-G solvation = 24.000497 kcal Electronic energy + Delta-G solvation = -20558.472315 eV Core-core repulsion = 17532.350764 eV Total energy + Delta-G solvation = -3026.121550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.38988 -37.81901 -37.04732 -34.63076 -32.42143 -30.78210 -30.28588 -29.26122 -25.78646 -25.55022 -25.16272 -23.30327 -22.93947 -22.24839 -19.96011 -18.44991 -17.32601 -16.97084 -16.08229 -15.88397 -15.71329 -15.06412 -14.55176 -14.13257 -13.91635 -13.79983 -13.42192 -12.96081 -12.48372 -12.35269 -12.25320 -12.10599 -11.80628 -11.45330 -11.12855 -10.99544 -10.86301 -10.64251 -10.58192 -10.17153 -10.07898 -9.93244 -9.37741 -9.08915 -8.62836 -8.61050 -8.28419 -8.14098 -7.69725 -5.90314 -4.01027 0.94980 1.38914 2.36450 2.82505 3.32940 3.37912 3.40320 3.75459 4.44302 4.50844 4.62420 4.86195 4.95635 5.16464 5.17477 5.34986 5.36749 5.44634 5.57922 5.69533 5.79742 6.02996 6.24069 6.30402 6.32558 6.38797 6.46724 6.52694 6.66441 6.72100 6.89367 7.08427 7.17272 7.19520 7.40047 7.47776 7.72277 7.76567 7.83696 7.96203 8.21742 8.35478 8.56306 9.00222 9.63927 11.10096 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031801 B = 0.003762 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.269247 B = 7440.955194 C = 7802.423516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.069 3.931 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.051 0.949 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.889 3.111 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.075 3.925 13 N -0.680 5.680 14 C 0.126 3.874 15 C -0.157 4.157 16 C -0.001 4.001 17 O -0.197 6.197 18 C 0.046 3.954 19 C -0.114 4.114 20 C -0.097 4.097 21 C -0.142 4.142 22 C -0.055 4.055 23 C -0.110 4.110 24 H 0.020 0.980 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.083 0.917 29 H 0.010 0.990 30 H 0.258 0.742 31 H 0.013 0.987 32 H 0.057 0.943 33 H 0.338 0.662 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.205 0.795 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 -0.510 17.910 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.547 4.547 5 H 0.069 0.931 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.053 4.053 13 N -0.313 5.313 14 C -0.003 4.003 15 C -0.159 4.159 16 C -0.067 4.067 17 O -0.098 6.098 18 C -0.001 4.001 19 C -0.132 4.132 20 C -0.115 4.115 21 C -0.160 4.160 22 C -0.073 4.073 23 C -0.111 4.111 24 H 0.039 0.961 25 H 0.092 0.908 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.102 0.898 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.157 0.843 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.221 0.779 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.625 -0.538 17.947 18.146 hybrid contribution 1.385 -0.279 -1.045 1.757 sum -1.240 -0.817 16.902 16.967 Atomic orbital electron populations 1.21630 0.97368 0.98529 1.00082 1.18088 0.93237 0.91954 0.89885 1.21829 0.97641 0.99200 1.00296 1.21070 1.31211 1.11885 0.90494 0.93059 1.24881 0.95012 0.94966 0.98667 1.69826 1.36679 1.22789 1.23011 0.86723 0.79077 0.79853 0.82665 1.20395 1.21366 1.20490 1.22179 0.95505 0.97869 0.89747 1.60617 1.63689 1.06391 1.00572 1.20220 0.95997 0.97476 0.86642 1.21195 0.92896 1.02143 0.99692 1.23750 0.96610 0.97566 0.88763 1.83978 1.20484 1.58371 1.46976 1.19664 0.86038 0.96387 0.98046 1.19861 0.89616 1.03102 1.00655 1.20888 0.97030 0.96072 0.97476 1.20784 0.98500 1.00479 0.96262 1.20400 0.90781 0.97548 0.98568 1.19769 0.94985 0.99957 0.96398 0.96103 0.90792 0.96347 0.96251 0.89837 0.97077 0.93135 0.96829 0.92492 0.84261 0.94871 0.90445 0.77887 0.85448 0.85120 0.85508 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 8.09 37.16 0.30 -2.60 16 2 C 0.07 1.66 0.57 -155.66 -0.09 1.58 16 3 C -0.13 -3.12 7.92 37.15 0.29 -2.83 16 4 C -0.51 -13.64 8.01 -34.44 -0.28 -13.91 16 5 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -24.53 9.35 55.43 0.52 -24.01 16 8 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.08 1.55 4.59 -3.83 -0.02 1.53 16 13 N -0.68 -12.16 5.70 -115.06 -0.66 -12.82 16 14 C 0.13 1.86 6.23 -4.98 -0.03 1.83 16 15 C -0.16 -2.24 5.87 -102.66 -0.60 -2.84 16 16 C 0.00 -0.02 11.89 29.24 0.35 0.33 16 17 O -0.20 -2.70 10.58 3.92 0.04 -2.65 16 18 C 0.05 0.64 7.42 -38.47 -0.29 0.35 16 19 C -0.11 -1.31 10.07 -39.46 -0.40 -1.71 16 20 C -0.10 -1.00 10.01 -39.54 -0.40 -1.39 16 21 C -0.14 -1.61 9.98 -39.94 -0.40 -2.01 16 22 C -0.05 -0.75 10.05 -39.69 -0.40 -1.15 16 23 C -0.11 -1.62 6.38 -105.16 -0.67 -2.29 16 24 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 25 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 29 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.34 6.08 6.76 -39.29 -0.27 5.82 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.20 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -29.01 326.99 -8.73 -37.73 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.82 Total: 4.18 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -2.71 Total: -23.42 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.14 Total: -36.83 kcal Atomic # 8 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.01 -8.73 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459738001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.735 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds