Wall clock time and date at job start Mon Mar 30 2020 01:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47718 * 2 1 4 4 C 1.50704 * 109.46884 * 239.99874 * 2 1 3 5 5 H 1.07998 * 120.00200 * 240.00506 * 4 2 1 6 6 C 1.37875 * 119.99708 * 60.00320 * 4 2 1 7 7 N 1.31509 * 120.00164 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99721 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47367 * 60.00196 * 8 6 4 10 10 H 1.48500 * 109.46721 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47109 * 299.99640 * 8 6 4 12 12 C 1.52999 * 109.47084 * 120.00309 * 2 1 3 13 13 N 1.46895 * 109.47243 * 299.99735 * 12 2 1 14 14 C 1.46900 * 111.00327 * 180.02562 * 13 12 2 15 15 C 1.50696 * 109.47116 * 180.02562 * 14 13 12 16 16 C 1.33997 * 126.90582 * 260.01994 * 15 14 13 17 17 O 1.34450 * 110.15507 * 179.97438 * 16 15 14 18 18 C 1.34804 * 110.89096 * 0.02562 * 17 16 15 19 19 C 1.38938 * 133.49830 * 180.02562 * 18 17 16 20 20 C 1.37855 * 119.81787 * 179.97438 * 19 18 17 21 21 C 1.38741 * 120.68496 * 0.02562 * 20 19 18 22 22 C 1.36738 * 120.41799 * 359.97438 * 21 20 19 23 23 C 1.39402 * 119.71562 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.46495 * 299.99997 * 1 2 3 25 25 H 1.08999 * 109.47039 * 59.99779 * 1 2 3 26 26 H 1.08997 * 109.47619 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47596 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47046 * 300.00217 * 3 2 1 29 29 H 1.09000 * 109.46735 * 60.00045 * 3 2 1 30 30 H 0.97009 * 120.00099 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47099 * 179.97438 * 12 2 1 32 32 H 1.09005 * 109.47270 * 60.00054 * 12 2 1 33 33 H 1.00896 * 110.99951 * 303.95252 * 13 12 2 34 34 H 1.08994 * 109.47418 * 59.99417 * 14 13 12 35 35 H 1.09001 * 109.46733 * 299.99999 * 14 13 12 36 36 H 1.08004 * 124.92306 * 359.96157 * 16 15 14 37 37 H 1.07999 * 120.09186 * 0.22478 * 19 18 17 38 38 H 1.08004 * 119.65488 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.79097 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.13846 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3212 -1.1204 -4.0080 9 1 1.8256 -2.5202 -4.0078 10 1 1.8268 -0.4199 -5.2204 11 1 3.8062 -1.1210 -4.0083 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0289 2.4486 14 6 2.0219 -0.6947 3.6703 15 6 1.5003 0.0419 4.8771 16 6 2.1689 0.9237 5.6326 17 8 1.3806 1.3767 6.6231 18 6 0.1584 0.8112 6.5616 19 6 -0.9925 0.9352 7.3299 20 6 -2.1151 0.2037 7.0058 21 6 -2.1092 -0.6579 5.9184 22 6 -0.9869 -0.7945 5.1494 23 6 0.1580 -0.0630 5.4617 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4423 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 0.7087 1.1613 -3.4844 31 1 3.1300 -0.7217 1.2490 32 1 1.6767 -1.7490 1.2492 33 1 1.8199 0.9434 2.4402 34 1 3.1117 -0.6943 3.6868 35 1 1.6587 -1.7223 3.6872 36 1 3.1928 1.2265 5.4698 37 1 -1.0089 1.6058 8.1763 38 1 -3.0083 0.3018 7.6051 39 1 -2.9968 -1.2243 5.6777 40 1 -0.9874 -1.4662 4.3037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459738001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:51 Heat of formation + Delta-G solvation = 8.535322 kcal Electronic energy + Delta-G solvation = -20559.142935 eV Core-core repulsion = 17532.350764 eV Total energy + Delta-G solvation = -3026.792171 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.35775 -38.73566 -38.70075 -36.13286 -33.89571 -32.36029 -31.28553 -30.28257 -27.50890 -27.29797 -27.08090 -24.57058 -24.15628 -23.16329 -21.00386 -20.31244 -18.27445 -18.10559 -17.71714 -17.06767 -16.88632 -16.55175 -16.11887 -15.49608 -15.19935 -14.90793 -14.63780 -14.25831 -14.17480 -13.88549 -13.58100 -13.17461 -13.06722 -13.01091 -12.80892 -12.62705 -12.48001 -12.40488 -12.11811 -12.06330 -11.76469 -11.30508 -11.08845 -10.82586 -10.60256 -10.33570 -9.55128 -9.21825 -9.01890 -7.95671 -6.12951 0.03124 0.44905 1.37515 1.44376 1.45100 1.51920 1.90849 2.47321 2.82020 3.26404 3.50508 3.61968 3.71942 4.03875 4.18623 4.22055 4.46785 4.52687 4.56703 4.60316 4.66588 4.71232 4.76037 4.87976 5.02535 5.08162 5.17711 5.28896 5.32993 5.40163 5.42999 5.51448 5.53856 5.60226 5.70408 5.76267 5.76788 6.16404 6.23972 6.25129 6.34244 6.49296 6.63067 6.96562 7.54734 9.02306 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031801 B = 0.003762 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.269247 B = 7440.955194 C = 7802.423516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.059 3.941 3 C -0.119 4.119 4 C -0.527 4.527 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.091 3.909 13 N -0.684 5.684 14 C 0.133 3.867 15 C -0.186 4.186 16 C 0.014 3.986 17 O -0.203 6.203 18 C 0.021 3.979 19 C -0.116 4.116 20 C -0.092 4.092 21 C -0.139 4.139 22 C -0.084 4.084 23 C -0.136 4.136 24 H 0.029 0.971 25 H 0.047 0.953 26 H 0.010 0.990 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.257 0.743 31 H 0.014 0.986 32 H 0.049 0.951 33 H 0.338 0.662 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.239 0.761 37 H 0.152 0.848 38 H 0.168 0.832 39 H 0.150 0.850 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 -0.420 19.447 19.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.058 3.942 3 C -0.177 4.177 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.038 4.038 13 N -0.317 5.317 14 C 0.005 3.995 15 C -0.188 4.188 16 C -0.051 4.051 17 O -0.105 6.105 18 C -0.026 4.026 19 C -0.135 4.135 20 C -0.110 4.110 21 C -0.157 4.157 22 C -0.102 4.102 23 C -0.137 4.137 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.029 0.971 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.157 0.843 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.255 0.745 37 H 0.170 0.830 38 H 0.186 0.814 39 H 0.168 0.832 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.642 -0.454 19.499 19.683 hybrid contribution 1.329 -0.301 -1.444 1.985 sum -1.313 -0.755 18.055 18.119 Atomic orbital electron populations 1.21448 0.97918 0.97637 0.99112 1.18148 0.92772 0.92425 0.90825 1.21647 0.97499 0.98793 0.99801 1.21410 1.31284 1.12006 0.91877 0.93527 1.25543 0.95292 0.95643 1.01201 1.69968 1.37334 1.23688 1.23315 0.85828 0.78668 0.78805 0.79555 1.20128 1.21199 1.19995 1.21826 0.95285 0.97133 0.89562 1.60513 1.64073 1.06318 1.00782 1.20135 0.96904 0.96961 0.85524 1.21176 0.93469 1.03818 1.00323 1.24377 0.97476 0.95916 0.87381 1.83977 1.20668 1.58484 1.47330 1.20077 0.86808 0.96989 0.98733 1.20316 0.89019 1.03244 1.00873 1.21341 0.97903 0.94680 0.97049 1.21143 0.98393 1.00270 0.95876 1.20516 0.91795 0.98452 0.99422 1.20057 0.95572 1.00789 0.97233 0.95170 0.93406 0.97108 0.96177 0.92691 0.95093 0.93356 0.96735 0.93236 0.84256 0.93132 0.91004 0.74467 0.83024 0.81434 0.83246 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.13 8.09 71.98 0.58 -4.55 16 2 C 0.06 2.85 0.57 -52.93 -0.03 2.82 16 3 C -0.12 -5.64 7.92 71.98 0.57 -5.07 16 4 C -0.53 -28.43 8.01 25.60 0.21 -28.22 16 5 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 6 C 0.02 1.21 5.15 84.66 0.44 1.64 16 7 N -0.90 -50.75 9.35 21.45 0.20 -50.55 16 8 Si 0.94 43.29 29.54 68.60 2.03 45.32 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 C 0.09 3.71 4.59 86.30 0.40 4.10 16 13 N -0.68 -24.01 5.70 -517.95 -2.95 -26.96 16 14 C 0.13 3.84 6.23 85.56 0.53 4.37 16 15 C -0.19 -5.14 5.87 -18.60 -0.11 -5.25 16 16 C 0.01 0.32 11.89 66.85 0.79 1.11 16 17 O -0.20 -5.28 10.58 -8.89 -0.09 -5.37 16 18 C 0.02 0.56 7.42 22.99 0.17 0.73 16 19 C -0.12 -2.42 10.07 22.35 0.23 -2.20 16 20 C -0.09 -1.64 10.01 22.30 0.22 -1.42 16 21 C -0.14 -2.92 9.98 22.04 0.22 -2.70 16 22 C -0.08 -2.28 10.05 22.20 0.22 -2.05 16 23 C -0.14 -3.95 6.38 -20.21 -0.13 -4.08 16 24 H 0.03 1.39 7.60 -2.39 -0.02 1.37 16 25 H 0.05 2.61 6.07 -2.39 -0.01 2.60 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 2.91 6.07 -2.39 -0.01 2.90 16 29 H 0.03 1.29 6.57 -2.39 -0.02 1.27 16 30 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16 31 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.05 2.07 8.14 -2.38 -0.02 2.06 16 33 H 0.34 11.79 6.76 -89.70 -0.61 11.18 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.24 3.45 8.06 -2.91 -0.02 3.42 16 37 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 40 H 0.12 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -62.48 326.99 3.91 -58.56 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.42 Total: 19.77 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 4.31 Total: -40.76 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -2.75 Total: -77.52 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.09 Total: -5.37 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -62.48 3.91 -58.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459738001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.100 kcal (2) G-P(sol) polarization free energy of solvation -62.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds