Wall clock time and date at job start Mon Mar 30 2020 01:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46798 * 2 1 4 4 C 1.50692 * 109.47239 * 240.00193 * 2 1 3 5 5 H 1.08004 * 120.00058 * 239.99879 * 4 2 1 6 6 C 1.37879 * 120.00172 * 59.99753 * 4 2 1 7 7 N 1.31506 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99709 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46994 * 90.00346 * 8 6 4 10 10 H 1.48504 * 109.46919 * 209.99932 * 8 6 4 11 11 H 1.48494 * 109.47546 * 329.99868 * 8 6 4 12 12 C 1.53004 * 109.47191 * 119.99674 * 2 1 3 13 13 N 1.46895 * 109.47035 * 300.00419 * 12 2 1 14 14 C 1.46906 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.50703 * 109.47109 * 179.97438 * 14 13 12 16 16 C 1.37857 * 120.02051 * 260.00188 * 15 14 13 17 17 C 1.38728 * 120.69207 * 179.97438 * 16 15 14 18 18 C 1.37761 * 120.27234 * 0.02562 * 17 16 15 19 19 C 1.39376 * 119.59893 * 359.97438 * 18 17 16 20 20 C 1.46793 * 134.34061 * 179.97438 * 19 18 17 21 21 C 1.33996 * 106.17940 * 180.02562 * 20 19 18 22 22 O 1.34439 * 110.16504 * 359.97438 * 21 20 19 23 23 C 1.34840 * 110.89587 * 359.73876 * 22 21 20 24 24 H 1.09003 * 109.47221 * 299.99569 * 1 2 3 25 25 H 1.08997 * 109.47170 * 60.00348 * 1 2 3 26 26 H 1.09005 * 109.46721 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47612 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47506 * 300.00323 * 3 2 1 29 29 H 1.09004 * 109.47572 * 59.99937 * 3 2 1 30 30 H 0.96998 * 119.99843 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.46863 * 180.02562 * 12 2 1 32 32 H 1.09002 * 109.46661 * 60.00438 * 12 2 1 33 33 H 1.00899 * 111.00672 * 56.04786 * 13 12 2 34 34 H 1.08992 * 109.47459 * 299.99826 * 14 13 12 35 35 H 1.09004 * 109.47040 * 59.99976 * 14 13 12 36 36 H 1.08000 * 119.65923 * 359.97438 * 16 15 14 37 37 H 1.07996 * 119.86349 * 179.97438 * 17 16 15 38 38 H 1.07997 * 120.19521 * 179.97438 * 18 17 16 39 39 H 1.07999 * 126.91153 * 0.02562 * 20 19 18 40 40 H 1.08001 * 124.91741 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1401 -5.1120 11 1 3.6310 -1.7564 -3.7119 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0209 -0.6951 3.6704 15 6 1.5002 0.0422 4.8772 16 6 2.3179 0.9221 5.5536 17 6 1.8529 1.6086 6.6658 18 6 0.5629 1.4182 7.1102 19 6 -0.2739 0.5313 6.4351 20 6 -1.6624 0.0907 6.6168 21 6 -1.9062 -0.7893 5.6362 22 8 -0.8145 -0.9393 4.8661 23 6 0.1941 -0.1590 5.3043 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4427 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 0.7089 1.1613 -3.4844 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2493 33 1 0.5438 0.0413 2.4402 34 1 1.6571 -1.7224 3.6870 35 1 3.1108 -0.6953 3.6874 36 1 3.3312 1.0787 5.2142 37 1 2.5051 2.2945 7.1859 38 1 0.2023 1.9530 7.9764 39 1 -2.3492 0.4114 7.3861 40 1 -2.8442 -1.3030 5.4857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459739691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:43 Heat of formation + Delta-G solvation = 23.867534 kcal Electronic energy + Delta-G solvation = -20730.898665 eV Core-core repulsion = 17704.771349 eV Total energy + Delta-G solvation = -3026.127316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.40917 -38.15525 -36.77662 -34.36683 -32.53721 -31.22422 -29.87954 -29.30772 -25.69592 -25.51029 -25.13736 -23.26267 -22.43029 -22.27030 -20.52380 -18.41432 -17.38515 -17.03488 -16.09038 -15.94920 -15.62198 -15.00225 -14.60316 -14.15349 -14.00580 -13.52697 -13.24022 -12.70345 -12.64014 -12.46436 -12.17378 -12.02046 -11.82784 -11.64946 -11.10844 -10.95833 -10.84134 -10.62759 -10.50359 -10.15109 -10.12771 -10.00350 -9.34247 -9.05695 -8.61568 -8.55337 -8.26101 -8.15682 -7.65535 -5.87823 -3.98202 0.91751 1.38587 2.34405 2.82956 3.33340 3.40260 3.43390 3.70039 4.42443 4.46867 4.59261 4.89365 4.96380 5.15199 5.20404 5.32864 5.37519 5.41704 5.54779 5.67163 5.82895 5.92708 6.20327 6.33565 6.37507 6.39997 6.42891 6.54618 6.66794 6.76153 6.93393 7.12381 7.17667 7.21515 7.43003 7.50930 7.75456 7.79712 7.86493 7.99383 8.24848 8.38403 8.59460 9.03205 9.66540 11.12727 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.003979 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.220918 B = 7035.092066 C = 7413.745746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 C -0.119 4.119 4 C -0.506 4.506 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.075 3.925 13 N -0.679 5.679 14 C 0.095 3.905 15 C -0.056 4.056 16 C -0.080 4.080 17 C -0.134 4.134 18 C -0.081 4.081 19 C -0.134 4.134 20 C -0.217 4.217 21 C 0.009 3.991 22 O -0.192 6.192 23 C 0.058 3.942 24 H 0.010 0.990 25 H 0.083 0.917 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.074 0.926 29 H 0.020 0.980 30 H 0.258 0.742 31 H 0.057 0.943 32 H 0.013 0.987 33 H 0.339 0.661 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.155 0.845 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 -0.444 18.926 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.068 3.932 3 C -0.176 4.176 4 C -0.545 4.545 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.053 4.053 13 N -0.311 5.311 14 C -0.034 4.034 15 C -0.057 4.057 16 C -0.099 4.099 17 C -0.152 4.152 18 C -0.100 4.100 19 C -0.135 4.135 20 C -0.236 4.236 21 C -0.056 4.056 22 O -0.093 6.093 23 C 0.010 3.990 24 H 0.029 0.971 25 H 0.102 0.898 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.092 0.908 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.158 0.842 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.173 0.827 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.337 -0.050 18.525 18.672 hybrid contribution -0.458 -1.216 -0.693 1.473 sum -2.795 -1.266 17.832 18.094 Atomic orbital electron populations 1.21828 0.98545 0.98343 1.00220 1.18095 0.92106 0.93097 0.89900 1.21632 0.97753 0.98171 1.00072 1.21108 1.31112 1.11769 0.90469 0.92999 1.24884 0.95090 0.94932 0.98668 1.69837 1.36917 1.22734 1.22860 0.86660 0.79198 0.79410 0.83061 1.20896 1.21311 1.20061 1.22185 0.98961 0.94463 0.89733 1.60722 1.16622 1.53225 1.00567 1.20859 1.00310 0.94314 0.87937 1.18859 0.88871 0.99816 0.98106 1.20854 0.99818 0.94564 0.94678 1.21004 0.95673 1.00898 0.97606 1.20448 0.93068 0.97093 0.99353 1.19924 0.94698 1.01148 0.97686 1.22467 0.95395 1.02805 1.02948 1.23965 0.90370 0.99935 0.91371 1.84053 1.19397 1.55808 1.50055 1.19503 0.89920 0.94252 0.95317 0.97144 0.89834 0.96244 0.96289 0.90773 0.96121 0.93221 0.92425 0.96825 0.84212 0.94911 0.90191 0.84653 0.85418 0.85850 0.82720 0.77800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 7.92 37.16 0.29 -2.93 16 2 C 0.07 1.71 0.57 -155.66 -0.09 1.62 16 3 C -0.12 -2.97 8.09 37.16 0.30 -2.67 16 4 C -0.51 -13.84 8.01 -34.44 -0.28 -14.12 16 5 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.85 9.35 55.43 0.52 -24.33 16 8 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 C 0.07 1.62 4.59 -3.82 -0.02 1.60 16 13 N -0.68 -12.97 5.70 -115.06 -0.66 -13.63 16 14 C 0.09 1.52 5.82 -4.97 -0.03 1.49 16 15 C -0.06 -0.83 5.40 -104.52 -0.56 -1.39 16 16 C -0.08 -1.03 9.64 -39.54 -0.38 -1.41 16 17 C -0.13 -1.50 10.03 -39.57 -0.40 -1.89 16 18 C -0.08 -0.94 10.10 -39.33 -0.40 -1.34 16 19 C -0.13 -1.79 6.40 -105.16 -0.67 -2.46 16 20 C -0.22 -2.39 11.14 -37.62 -0.42 -2.81 16 21 C 0.01 0.10 11.96 29.24 0.35 0.45 16 22 O -0.19 -2.85 10.58 3.85 0.04 -2.81 16 23 C 0.06 0.87 7.10 -38.49 -0.27 0.60 16 24 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 25 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 2.02 6.07 -51.93 -0.32 1.71 16 29 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.34 6.72 6.75 -39.29 -0.27 6.45 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.18 7.99 -51.93 -0.42 0.77 16 36 H 0.14 1.50 8.02 -52.49 -0.42 1.08 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -29.96 326.48 -8.67 -38.64 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.81 Total: 4.47 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -2.66 Total: -23.57 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.14 Total: -37.96 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.96 -8.67 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459739691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.506 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds