Wall clock time and date at job start Mon Mar 30 2020 01:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46798 * 2 1 4 4 C 1.50692 * 109.47239 * 240.00193 * 2 1 3 5 5 H 1.08004 * 120.00058 * 239.99879 * 4 2 1 6 6 C 1.37879 * 120.00172 * 59.99753 * 4 2 1 7 7 N 1.31506 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99709 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46994 * 90.00346 * 8 6 4 10 10 H 1.48504 * 109.46919 * 209.99932 * 8 6 4 11 11 H 1.48494 * 109.47546 * 329.99868 * 8 6 4 12 12 C 1.53004 * 109.47191 * 119.99674 * 2 1 3 13 13 N 1.46895 * 109.47035 * 300.00419 * 12 2 1 14 14 C 1.46906 * 110.99789 * 179.97438 * 13 12 2 15 15 C 1.50703 * 109.47109 * 179.97438 * 14 13 12 16 16 C 1.37857 * 120.02051 * 260.00188 * 15 14 13 17 17 C 1.38728 * 120.69207 * 179.97438 * 16 15 14 18 18 C 1.37761 * 120.27234 * 0.02562 * 17 16 15 19 19 C 1.39376 * 119.59893 * 359.97438 * 18 17 16 20 20 C 1.46793 * 134.34061 * 179.97438 * 19 18 17 21 21 C 1.33996 * 106.17940 * 180.02562 * 20 19 18 22 22 O 1.34439 * 110.16504 * 359.97438 * 21 20 19 23 23 C 1.34840 * 110.89587 * 359.73876 * 22 21 20 24 24 H 1.09003 * 109.47221 * 299.99569 * 1 2 3 25 25 H 1.08997 * 109.47170 * 60.00348 * 1 2 3 26 26 H 1.09005 * 109.46721 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47612 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47506 * 300.00323 * 3 2 1 29 29 H 1.09004 * 109.47572 * 59.99937 * 3 2 1 30 30 H 0.96998 * 119.99843 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.46863 * 180.02562 * 12 2 1 32 32 H 1.09002 * 109.46661 * 60.00438 * 12 2 1 33 33 H 1.00899 * 111.00672 * 56.04786 * 13 12 2 34 34 H 1.08992 * 109.47459 * 299.99826 * 14 13 12 35 35 H 1.09004 * 109.47040 * 59.99976 * 14 13 12 36 36 H 1.08000 * 119.65923 * 359.97438 * 16 15 14 37 37 H 1.07996 * 119.86349 * 179.97438 * 17 16 15 38 38 H 1.07997 * 120.19521 * 179.97438 * 18 17 16 39 39 H 1.07999 * 126.91153 * 0.02562 * 20 19 18 40 40 H 1.08001 * 124.91741 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.3449 -2.1616 -4.4123 10 1 2.4874 -0.1401 -5.1120 11 1 3.6310 -1.7564 -3.7119 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0209 -0.6951 3.6704 15 6 1.5002 0.0422 4.8772 16 6 2.3179 0.9221 5.5536 17 6 1.8529 1.6086 6.6658 18 6 0.5629 1.4182 7.1102 19 6 -0.2739 0.5313 6.4351 20 6 -1.6624 0.0907 6.6168 21 6 -1.9062 -0.7893 5.6362 22 8 -0.8145 -0.9393 4.8661 23 6 0.1941 -0.1590 5.3043 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4427 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 0.7089 1.1613 -3.4844 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2493 33 1 0.5438 0.0413 2.4402 34 1 1.6571 -1.7224 3.6870 35 1 3.1108 -0.6953 3.6874 36 1 3.3312 1.0787 5.2142 37 1 2.5051 2.2945 7.1859 38 1 0.2023 1.9530 7.9764 39 1 -2.3492 0.4114 7.3861 40 1 -2.8442 -1.3030 5.4857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459739691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:42 Heat of formation + Delta-G solvation = 7.378308 kcal Electronic energy + Delta-G solvation = -20731.613691 eV Core-core repulsion = 17704.771349 eV Total energy + Delta-G solvation = -3026.842343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.33922 -39.26602 -38.39873 -35.89071 -33.84466 -32.75271 -31.18211 -30.22895 -27.54176 -27.28873 -27.01653 -24.73615 -23.50949 -23.19486 -21.50796 -20.34837 -18.32483 -18.09303 -17.76487 -17.08216 -17.03202 -16.48943 -16.05696 -15.57389 -15.37050 -14.86008 -14.41160 -14.28419 -13.96071 -13.84874 -13.53819 -13.27380 -13.07195 -13.05319 -12.83982 -12.66847 -12.55383 -12.44604 -12.12783 -12.07720 -11.80776 -11.33848 -11.09242 -10.91419 -10.62024 -10.35173 -9.54870 -9.26956 -9.02076 -7.96737 -6.14080 -0.00598 0.43059 1.42680 1.44425 1.47804 1.53424 1.96075 2.46566 2.73882 3.25266 3.49128 3.61964 3.74947 3.92881 4.10744 4.32477 4.42170 4.49876 4.50667 4.61446 4.65147 4.69263 4.79386 4.84222 4.94754 4.99297 5.14686 5.25361 5.30927 5.41849 5.45779 5.51051 5.54999 5.55637 5.68868 5.74511 5.79780 6.11431 6.19051 6.26277 6.30082 6.44333 6.55620 6.94561 7.53463 9.01793 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.003979 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.220918 B = 7035.092066 C = 7413.745746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.059 3.941 3 C -0.104 4.104 4 C -0.527 4.527 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.947 3.053 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.089 3.911 13 N -0.679 5.679 14 C 0.100 3.900 15 C -0.081 4.081 16 C -0.085 4.085 17 C -0.133 4.133 18 C -0.081 4.081 19 C -0.153 4.153 20 C -0.218 4.218 21 C -0.001 4.001 22 O -0.220 6.220 23 C 0.026 3.974 24 H 0.025 0.975 25 H 0.058 0.942 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.049 0.951 29 H 0.030 0.970 30 H 0.258 0.742 31 H 0.056 0.944 32 H 0.007 0.993 33 H 0.333 0.667 34 H 0.025 0.975 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.186 0.814 40 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -0.127 20.592 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.059 3.941 3 C -0.162 4.162 4 C -0.565 4.565 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.774 3.226 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.197 1.197 12 C -0.040 4.040 13 N -0.310 5.310 14 C -0.028 4.028 15 C -0.082 4.082 16 C -0.103 4.103 17 C -0.150 4.150 18 C -0.099 4.099 19 C -0.153 4.153 20 C -0.237 4.237 21 C -0.065 4.065 22 O -0.122 6.122 23 C -0.021 4.021 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.152 0.848 34 H 0.043 0.957 35 H 0.109 0.891 36 H 0.166 0.834 37 H 0.178 0.822 38 H 0.171 0.829 39 H 0.203 0.797 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.392 0.266 20.208 20.351 hybrid contribution -0.471 -1.284 -1.119 1.767 sum -2.863 -1.018 19.089 19.329 Atomic orbital electron populations 1.21652 0.98488 0.97865 0.99660 1.18151 0.92182 0.93060 0.90751 1.21451 0.97263 0.98222 0.99225 1.21410 1.31359 1.11932 0.91823 0.93569 1.25556 0.95300 0.95606 1.01235 1.69970 1.37448 1.23588 1.23322 0.85734 0.78738 0.78382 0.79786 1.20538 1.21006 1.19663 1.21877 0.98660 0.93790 0.89691 1.60675 1.16133 1.53322 1.00870 1.20834 1.00787 0.93943 0.87266 1.18867 0.89617 1.01380 0.98369 1.21142 1.00217 0.93977 0.95007 1.21391 0.96076 1.00660 0.96916 1.20891 0.92959 0.96282 0.99751 1.20390 0.96069 1.01448 0.97438 1.22873 0.94834 1.02399 1.03568 1.24794 0.90542 1.00212 0.90904 1.84023 1.20391 1.56407 1.51388 1.19816 0.90329 0.95359 0.96594 0.95574 0.92352 0.96600 0.96690 0.93246 0.95108 0.93289 0.92535 0.97518 0.84834 0.95684 0.89142 0.83350 0.82204 0.82909 0.79692 0.74214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 7.92 71.98 0.57 -5.32 16 2 C 0.06 2.96 0.57 -52.93 -0.03 2.93 16 3 C -0.10 -5.23 8.09 71.98 0.58 -4.65 16 4 C -0.53 -29.05 8.01 25.60 0.21 -28.84 16 5 H 0.05 2.54 7.74 -2.91 -0.02 2.51 16 6 C 0.02 1.21 5.15 84.66 0.44 1.65 16 7 N -0.90 -51.34 9.35 21.45 0.20 -51.14 16 8 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.09 3.85 4.59 86.31 0.40 4.25 16 13 N -0.68 -25.91 5.70 -517.92 -2.95 -28.87 16 14 C 0.10 3.22 5.82 85.56 0.50 3.72 16 15 C -0.08 -2.40 5.40 -19.80 -0.11 -2.50 16 16 C -0.08 -2.05 9.64 22.30 0.21 -1.83 16 17 C -0.13 -2.62 10.03 22.27 0.22 -2.40 16 18 C -0.08 -1.66 10.10 22.43 0.23 -1.43 16 19 C -0.15 -3.85 6.40 -20.21 -0.13 -3.98 16 20 C -0.22 -4.36 11.14 23.54 0.26 -4.09 16 21 C 0.00 -0.01 11.96 66.85 0.80 0.78 16 22 O -0.22 -6.53 10.58 -9.15 -0.10 -6.63 16 23 C 0.03 0.79 7.10 22.98 0.16 0.95 16 24 H 0.03 1.17 6.57 -2.39 -0.02 1.15 16 25 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 26 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 2.72 6.07 -2.39 -0.01 2.71 16 29 H 0.03 1.43 7.60 -2.38 -0.02 1.42 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.33 13.30 6.75 -89.69 -0.61 12.70 16 34 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 2.64 7.99 -2.38 -0.02 2.62 16 36 H 0.15 3.04 8.02 -2.91 -0.02 3.01 16 37 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 39 H 0.19 2.36 8.06 -2.91 -0.02 2.33 16 40 H 0.24 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -64.69 326.48 3.91 -60.78 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.43 Total: 20.74 kcal Atomic # 6 Polarization: -45.08 SS G_CDS: 4.31 Total: -40.77 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -2.75 Total: -80.01 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.10 Total: -6.63 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -64.69 3.91 -60.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459739691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.159 kcal (2) G-P(sol) polarization free energy of solvation -64.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds