Wall clock time and date at job start Mon Mar 30 2020 01:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47217 * 2 1 4 4 C 1.53002 * 109.47406 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.55835 * 29.32002 * 4 3 2 6 6 C 1.52992 * 117.50214 * 243.62535 * 4 3 2 7 7 C 1.53001 * 117.50122 * 174.99893 * 4 3 2 8 8 H 1.09002 * 117.49486 * 359.97438 * 7 4 3 9 9 C 1.50697 * 117.50268 * 214.98260 * 7 4 3 10 10 O 1.21285 * 119.99621 * 0.02562 * 9 7 4 11 11 N 1.34773 * 120.00374 * 180.02562 * 9 7 4 12 12 C 1.39122 * 120.00137 * 174.43095 * 11 9 7 13 13 C 1.38647 * 120.28568 * 335.16200 * 12 11 9 14 14 C 1.38225 * 120.03675 * 180.25431 * 13 12 11 15 15 C 1.38862 * 120.61127 * 359.49682 * 14 13 12 16 16 C 1.36465 * 120.58264 * 0.25180 * 15 14 13 17 17 C 1.40745 * 119.93861 * 0.02562 * 16 15 14 18 18 C 1.41066 * 120.29767 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99660 * 145.07693 * 18 17 16 20 20 C 1.39957 * 120.00673 * 325.08097 * 18 17 16 21 21 N 1.30859 * 119.99590 * 4.79630 * 20 18 17 22 22 Si 1.86795 * 120.00419 * 184.79504 * 20 18 17 23 23 H 1.48501 * 109.47047 * 60.00049 * 22 20 18 24 24 H 1.48503 * 109.47321 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47191 * 300.00073 * 22 20 18 26 26 H 1.09002 * 109.47573 * 59.99340 * 1 2 3 27 27 H 1.08996 * 109.47207 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47012 * 299.99463 * 1 2 3 29 29 H 1.09001 * 109.47012 * 240.00537 * 2 1 3 30 30 H 1.09002 * 109.47573 * 120.00660 * 2 1 3 31 31 H 1.08998 * 109.47158 * 60.00554 * 3 2 1 32 32 H 1.09002 * 109.47388 * 300.00773 * 3 2 1 33 33 H 1.08999 * 117.50005 * 145.01856 * 6 4 3 34 34 H 1.08999 * 117.49909 * 0.02562 * 6 4 3 35 35 H 0.97005 * 119.99780 * 354.42999 * 11 9 7 36 36 H 1.08004 * 119.98330 * 0.03067 * 13 12 11 37 37 H 1.07992 * 119.69330 * 179.77306 * 14 13 12 38 38 H 1.08001 * 119.70922 * 180.23103 * 15 14 13 39 39 H 1.08001 * 120.03394 * 179.97438 * 16 15 14 40 40 H 0.96996 * 119.99691 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0401 0.5852 -0.4825 6 6 4.2770 2.0452 1.2149 7 6 4.2764 2.7945 -0.1190 8 1 3.6511 3.6839 -0.1969 9 6 5.5688 2.8390 -0.8927 10 8 6.0109 1.8267 -1.3936 11 7 6.2335 4.0036 -1.0282 12 6 7.4821 4.0247 -1.6413 13 6 8.2743 2.8868 -1.6538 14 6 9.5162 2.9151 -2.2599 15 6 9.9794 4.0736 -2.8696 16 6 9.2184 5.2063 -2.8765 17 6 7.9525 5.2059 -2.2614 18 6 7.1593 6.3725 -2.2646 19 1 6.0846 6.2945 -2.3380 20 6 7.7650 7.6309 -2.1728 21 7 9.0697 7.7310 -2.1786 22 14 6.7109 9.1675 -2.0420 23 1 5.8663 9.0861 -0.8233 24 1 7.5874 10.3633 -1.9573 25 1 5.8411 9.2746 -3.2408 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 5.2122 1.5844 1.5329 34 1 3.6521 2.4413 2.0154 35 1 5.8412 4.8271 -0.6981 36 1 7.9222 1.9789 -1.1866 37 1 10.1302 2.0266 -2.2632 38 1 10.9505 4.0782 -3.3420 39 1 9.5875 6.1026 -3.3529 40 1 9.4894 8.6031 -2.1146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000464495199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:51 Heat of formation + Delta-G solvation = -11.496791 kcal Electronic energy + Delta-G solvation = -20231.664232 eV Core-core repulsion = 17204.003404 eV Total energy + Delta-G solvation = -3027.660828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.86179 -37.88736 -36.57229 -33.92580 -33.71246 -33.58863 -29.58531 -28.69672 -27.46543 -25.34695 -23.87270 -22.08389 -21.41233 -20.69814 -20.18541 -19.15123 -17.40925 -16.83274 -16.19210 -15.35304 -15.16353 -14.76879 -14.43544 -14.16932 -13.92779 -13.36167 -13.01464 -12.89166 -12.62692 -12.30231 -12.27395 -11.96195 -11.77122 -11.41047 -11.24871 -11.16943 -11.10008 -10.97937 -10.91976 -10.48949 -10.17984 -10.08114 -9.92463 -9.75310 -9.37746 -9.20031 -8.75464 -7.29269 -6.89278 -6.59920 -4.43248 2.55467 2.86821 3.04062 3.05447 3.19892 3.31131 3.80393 3.91167 4.04326 4.64101 4.67905 4.81978 4.88067 5.03328 5.07210 5.24218 5.41836 5.44936 5.61097 5.63971 5.68472 5.73461 5.76942 5.91508 6.02749 6.12212 6.14204 6.34439 6.38452 6.54426 6.59863 6.94165 7.08510 7.19951 7.30364 7.68705 7.72984 8.01605 8.10526 8.13607 8.46407 8.59170 8.84826 8.86840 9.05663 10.24037 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018254 B = 0.004450 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.506366 B = 6290.204239 C = 7535.917305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.120 4.120 5 H 0.117 0.883 6 C -0.150 4.150 7 C -0.185 4.185 8 H 0.120 0.880 9 C 0.525 3.475 10 O -0.541 6.541 11 N -0.632 5.632 12 C 0.029 3.971 13 C -0.105 4.105 14 C -0.213 4.213 15 C -0.124 4.124 16 C -0.138 4.138 17 C 0.092 3.908 18 C -0.473 4.473 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.809 5.809 22 Si 0.913 3.087 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.266 1.266 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.405 0.595 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.556 -6.015 5.764 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.139 4.139 5 H 0.135 0.865 6 C -0.188 4.188 7 C -0.206 4.206 8 H 0.138 0.862 9 C 0.312 3.688 10 O -0.420 6.420 11 N -0.273 5.273 12 C -0.065 4.065 13 C -0.125 4.125 14 C -0.233 4.233 15 C -0.142 4.142 16 C -0.158 4.158 17 C 0.088 3.912 18 C -0.504 4.504 19 H 0.091 0.909 20 C -0.142 4.142 21 N -0.436 5.436 22 Si 0.738 3.262 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.191 1.191 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.241 0.759 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.149 0.851 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.081 -6.529 5.450 13.968 hybrid contribution -0.477 1.359 0.227 1.458 sum -11.558 -5.170 5.677 13.876 Atomic orbital electron populations 1.21781 0.96033 1.01479 1.01728 1.21500 0.95468 0.96687 1.02324 1.21235 0.92214 0.97152 1.02096 1.22408 0.94340 0.95894 1.01217 0.86501 1.23066 1.02952 1.02406 0.90366 1.22296 0.98188 0.98415 1.01699 0.86217 1.19591 0.84648 0.83802 0.80784 1.90608 1.68442 1.34434 1.48515 1.42898 1.18098 1.09650 1.56654 1.17936 0.86605 0.97337 1.04599 1.20777 0.93624 0.97208 1.00906 1.20389 0.97197 0.97543 1.08131 1.20546 0.98566 0.94046 1.01088 1.21190 0.95706 0.97358 1.01576 1.17413 0.93595 0.90727 0.89429 1.19232 0.94414 0.90101 1.46625 0.90862 1.25837 0.95175 1.00570 0.92608 1.69756 1.09866 1.26279 1.37659 0.86285 0.80174 0.79990 0.79711 1.19121 1.20380 1.19088 0.92749 0.92866 0.92868 0.91776 0.91877 0.91765 0.91438 0.88404 0.88120 0.75901 0.86633 0.89170 0.89320 0.85087 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.15 0.37 -0.81 16 2 C -0.12 -1.09 5.89 -26.74 -0.16 -1.25 16 3 C -0.09 -0.89 5.50 -26.73 -0.15 -1.03 16 4 C -0.12 -1.50 5.25 -90.62 -0.48 -1.98 16 5 H 0.12 1.68 7.60 -51.93 -0.39 1.28 16 6 C -0.15 -1.81 9.88 -26.73 -0.26 -2.08 16 7 C -0.18 -2.64 5.91 -91.77 -0.54 -3.18 16 8 H 0.12 1.48 8.14 -51.93 -0.42 1.05 16 9 C 0.52 10.21 7.41 -10.99 -0.08 10.13 16 10 O -0.54 -12.24 13.42 5.55 0.07 -12.17 16 11 N -0.63 -13.26 5.11 -9.48 -0.05 -13.31 16 12 C 0.03 0.72 6.46 -83.17 -0.54 0.18 16 13 C -0.11 -2.59 8.71 -39.44 -0.34 -2.93 16 14 C -0.21 -5.05 10.04 -39.35 -0.40 -5.45 16 15 C -0.12 -2.98 9.96 -39.99 -0.40 -3.38 16 16 C -0.14 -3.61 8.62 -39.27 -0.34 -3.95 16 17 C 0.09 2.41 5.56 -106.65 -0.59 1.82 16 18 C -0.47 -11.96 8.18 -37.87 -0.31 -12.27 16 19 H 0.07 1.75 7.47 -52.48 -0.39 1.36 16 20 C 0.07 1.79 5.42 -17.32 -0.09 1.70 16 21 N -0.81 -20.47 10.60 55.55 0.59 -19.88 16 22 Si 0.91 18.16 29.56 -169.99 -5.03 13.13 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.10 0.97 8.03 -51.93 -0.42 0.56 16 35 H 0.41 7.70 7.73 -40.82 -0.32 7.38 16 36 H 0.12 2.82 5.79 -52.48 -0.30 2.52 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 40 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -28.83 332.90 -9.62 -38.45 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -5.92 Total: 13.22 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -4.31 Total: -24.47 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.54 Total: -33.19 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.07 Total: -12.17 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.83 -9.62 -38.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000464495199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.954 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds