Wall clock time and date at job start Mon Mar 30 2020 01:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47217 * 2 1 4 4 C 1.53002 * 109.47406 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.55835 * 29.32002 * 4 3 2 6 6 C 1.52992 * 117.50214 * 243.62535 * 4 3 2 7 7 C 1.53001 * 117.50122 * 174.99893 * 4 3 2 8 8 H 1.09002 * 117.49486 * 359.97438 * 7 4 3 9 9 C 1.50697 * 117.50268 * 214.98260 * 7 4 3 10 10 O 1.21285 * 119.99621 * 0.02562 * 9 7 4 11 11 N 1.34773 * 120.00374 * 180.02562 * 9 7 4 12 12 C 1.39122 * 120.00137 * 174.43095 * 11 9 7 13 13 C 1.38647 * 120.28568 * 335.16200 * 12 11 9 14 14 C 1.38225 * 120.03675 * 180.25431 * 13 12 11 15 15 C 1.38862 * 120.61127 * 359.49682 * 14 13 12 16 16 C 1.36465 * 120.58264 * 0.25180 * 15 14 13 17 17 C 1.40745 * 119.93861 * 0.02562 * 16 15 14 18 18 C 1.41066 * 120.29767 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99660 * 145.07693 * 18 17 16 20 20 C 1.39957 * 120.00673 * 325.08097 * 18 17 16 21 21 N 1.30859 * 119.99590 * 4.79630 * 20 18 17 22 22 Si 1.86795 * 120.00419 * 184.79504 * 20 18 17 23 23 H 1.48501 * 109.47047 * 60.00049 * 22 20 18 24 24 H 1.48503 * 109.47321 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47191 * 300.00073 * 22 20 18 26 26 H 1.09002 * 109.47573 * 59.99340 * 1 2 3 27 27 H 1.08996 * 109.47207 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47012 * 299.99463 * 1 2 3 29 29 H 1.09001 * 109.47012 * 240.00537 * 2 1 3 30 30 H 1.09002 * 109.47573 * 120.00660 * 2 1 3 31 31 H 1.08998 * 109.47158 * 60.00554 * 3 2 1 32 32 H 1.09002 * 109.47388 * 300.00773 * 3 2 1 33 33 H 1.08999 * 117.50005 * 145.01856 * 6 4 3 34 34 H 1.08999 * 117.49909 * 0.02562 * 6 4 3 35 35 H 0.97005 * 119.99780 * 354.42999 * 11 9 7 36 36 H 1.08004 * 119.98330 * 0.03067 * 13 12 11 37 37 H 1.07992 * 119.69330 * 179.77306 * 14 13 12 38 38 H 1.08001 * 119.70922 * 180.23103 * 15 14 13 39 39 H 1.08001 * 120.03394 * 179.97438 * 16 15 14 40 40 H 0.96996 * 119.99691 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0401 0.5852 -0.4825 6 6 4.2770 2.0452 1.2149 7 6 4.2764 2.7945 -0.1190 8 1 3.6511 3.6839 -0.1969 9 6 5.5688 2.8390 -0.8927 10 8 6.0109 1.8267 -1.3936 11 7 6.2335 4.0036 -1.0282 12 6 7.4821 4.0247 -1.6413 13 6 8.2743 2.8868 -1.6538 14 6 9.5162 2.9151 -2.2599 15 6 9.9794 4.0736 -2.8696 16 6 9.2184 5.2063 -2.8765 17 6 7.9525 5.2059 -2.2614 18 6 7.1593 6.3725 -2.2646 19 1 6.0846 6.2945 -2.3380 20 6 7.7650 7.6309 -2.1728 21 7 9.0697 7.7310 -2.1786 22 14 6.7109 9.1675 -2.0420 23 1 5.8663 9.0861 -0.8233 24 1 7.5874 10.3633 -1.9573 25 1 5.8411 9.2746 -3.2408 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 5.2122 1.5844 1.5329 34 1 3.6521 2.4413 2.0154 35 1 5.8412 4.8271 -0.6981 36 1 7.9222 1.9789 -1.1866 37 1 10.1302 2.0266 -2.2632 38 1 10.9505 4.0782 -3.3420 39 1 9.5875 6.1026 -3.3529 40 1 9.4894 8.6031 -2.1146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000464495199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:50 Heat of formation + Delta-G solvation = -25.601562 kcal Electronic energy + Delta-G solvation = -20232.275861 eV Core-core repulsion = 17204.003404 eV Total energy + Delta-G solvation = -3028.272457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41670 -39.42643 -37.96546 -35.48018 -35.45804 -34.70371 -31.49656 -30.46401 -28.34272 -27.18079 -25.28184 -23.29313 -22.79619 -22.18839 -21.35004 -20.71618 -19.24188 -18.38224 -17.86543 -16.96079 -16.27676 -16.05895 -15.96084 -15.60743 -15.26807 -14.77923 -14.47888 -14.27402 -14.11602 -13.66398 -13.64555 -13.14404 -13.03135 -12.88824 -12.82157 -12.74139 -12.18730 -12.14221 -11.97280 -11.91197 -11.65757 -11.60094 -11.17766 -11.11199 -11.02034 -10.89175 -10.45421 -9.25079 -8.75872 -8.44211 -6.36479 0.78878 1.04742 1.42490 1.52864 1.54664 1.73133 2.24010 2.35474 2.80021 2.89628 3.66431 3.68407 3.76677 3.89196 4.19148 4.23677 4.32043 4.40278 4.50608 4.62705 4.65632 4.74309 4.84905 4.89542 4.95533 4.99865 5.08166 5.10779 5.20281 5.23056 5.32955 5.38848 5.43152 5.44116 5.54193 5.78540 5.84997 6.13683 6.16781 6.24937 6.64709 6.76364 6.96199 7.01509 7.38991 8.42465 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018254 B = 0.004450 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.506366 B = 6290.204239 C = 7535.917305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.115 4.115 5 H 0.092 0.908 6 C -0.132 4.132 7 C -0.197 4.197 8 H 0.146 0.854 9 C 0.521 3.479 10 O -0.578 6.578 11 N -0.634 5.634 12 C 0.023 3.977 13 C -0.121 4.121 14 C -0.216 4.216 15 C -0.128 4.128 16 C -0.163 4.163 17 C 0.063 3.937 18 C -0.494 4.494 19 H 0.080 0.920 20 C 0.032 3.968 21 N -0.839 5.839 22 Si 0.988 3.012 23 H -0.254 1.254 24 H -0.274 1.274 25 H -0.263 1.263 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.414 0.586 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.670 -5.425 7.081 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.121 4.121 4 C -0.133 4.133 5 H 0.111 0.889 6 C -0.169 4.169 7 C -0.218 4.218 8 H 0.164 0.836 9 C 0.311 3.689 10 O -0.459 6.459 11 N -0.275 5.275 12 C -0.072 4.072 13 C -0.141 4.141 14 C -0.236 4.236 15 C -0.147 4.147 16 C -0.183 4.183 17 C 0.059 3.941 18 C -0.524 4.524 19 H 0.098 0.902 20 C -0.181 4.181 21 N -0.466 5.466 22 Si 0.809 3.191 23 H -0.178 1.178 24 H -0.199 1.199 25 H -0.187 1.187 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.154 0.846 35 H 0.251 0.749 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.208 -5.952 6.780 15.995 hybrid contribution 0.231 1.077 -0.196 1.118 sum -12.978 -4.875 6.584 15.347 Atomic orbital electron populations 1.21761 0.94827 1.02043 1.02158 1.21497 0.96489 0.96071 1.01977 1.21240 0.89867 0.97918 1.03028 1.22454 0.96009 0.93812 1.01075 0.88949 1.23210 1.02795 1.00683 0.90260 1.22296 0.95958 1.00563 1.02938 0.83647 1.20509 0.85794 0.82527 0.80076 1.90579 1.69837 1.35503 1.49992 1.42955 1.17201 1.10774 1.56571 1.18109 0.88037 0.96869 1.04196 1.20951 0.94271 0.97264 1.01622 1.20703 0.97198 0.98350 1.07349 1.20783 0.99398 0.93524 1.00948 1.21227 0.96647 0.97684 1.02758 1.17765 0.94219 0.91839 0.90235 1.19474 0.94745 0.90647 1.47566 0.90196 1.26752 0.96342 1.03462 0.91558 1.69845 1.11561 1.27382 1.37852 0.85155 0.78337 0.75583 0.80049 1.17805 1.19913 1.18750 0.92814 0.92316 0.91923 0.92962 0.91522 0.89699 0.91552 0.89672 0.84588 0.74920 0.86790 0.86644 0.86901 0.86457 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.97 5.89 30.59 0.18 -1.79 16 3 C -0.08 -1.43 5.50 30.59 0.17 -1.27 16 4 C -0.11 -2.70 5.25 -10.80 -0.06 -2.76 16 5 H 0.09 2.66 7.60 -2.39 -0.02 2.64 16 6 C -0.13 -2.87 9.88 30.59 0.30 -2.56 16 7 C -0.20 -5.30 5.91 -11.54 -0.07 -5.37 16 8 H 0.15 3.17 8.14 -2.39 -0.02 3.15 16 9 C 0.52 20.32 7.41 87.66 0.65 20.97 16 10 O -0.58 -26.70 13.42 -3.05 -0.04 -26.74 16 11 N -0.63 -26.75 5.11 -302.29 -1.55 -28.29 16 12 C 0.02 1.15 6.46 38.88 0.25 1.40 16 13 C -0.12 -6.06 8.71 22.36 0.19 -5.86 16 14 C -0.22 -10.32 10.04 22.42 0.22 -10.09 16 15 C -0.13 -6.22 9.96 22.01 0.22 -6.00 16 16 C -0.16 -8.75 8.62 22.47 0.19 -8.56 16 17 C 0.06 3.39 5.56 -21.18 -0.12 3.27 16 18 C -0.49 -25.25 8.18 23.38 0.19 -25.06 16 19 H 0.08 3.83 7.47 -2.91 -0.02 3.81 16 20 C 0.03 1.54 5.42 85.25 0.46 2.00 16 21 N -0.84 -43.01 10.60 21.83 0.23 -42.78 16 22 Si 0.99 36.55 29.56 68.60 2.03 38.58 16 23 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 24 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 25 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.15 7.88 -2.39 -0.02 1.13 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.14 2.03 8.03 -2.39 -0.02 2.01 16 35 H 0.41 15.63 7.73 -92.70 -0.72 14.92 16 36 H 0.11 5.70 5.79 -2.91 -0.02 5.68 16 37 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.12 6.53 6.13 -2.91 -0.02 6.51 16 40 H 0.28 13.34 8.30 -92.71 -0.77 12.57 16 Total: -1.00 -63.62 332.90 4.50 -59.12 By element: Atomic # 1 Polarization: 42.73 SS G_CDS: 0.32 Total: 43.05 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 3.51 Total: -42.93 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.31 Total: -71.07 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.04 Total: -26.74 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Total: -63.62 4.50 -59.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000464495199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.517 kcal (2) G-P(sol) polarization free energy of solvation -63.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds