Wall clock time and date at job start Mon Mar 30 2020 02:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47282 * 2 1 4 4 N 1.46497 * 109.47363 * 180.02562 * 3 2 1 5 5 C 1.36709 * 119.99952 * 264.12134 * 4 3 2 6 6 H 1.08000 * 120.00648 * 138.76364 * 5 4 3 7 7 C 1.39130 * 119.99946 * 318.76013 * 5 4 3 8 8 N 1.31324 * 119.99803 * 348.81421 * 7 5 4 9 9 Si 1.86799 * 120.00041 * 168.80813 * 7 5 4 10 10 H 1.48497 * 109.47169 * 60.00500 * 9 7 5 11 11 H 1.48507 * 109.47030 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47266 * 300.00174 * 9 7 5 13 13 C 1.34774 * 119.99934 * 84.11187 * 4 3 2 14 14 O 1.21762 * 119.99655 * 179.97438 * 13 4 3 15 15 C 1.46231 * 120.00053 * 0.02562 * 13 4 3 16 16 C 1.34973 * 120.00043 * 172.36964 * 15 13 4 17 17 C 1.47153 * 119.99900 * 346.78827 * 16 15 13 18 18 C 1.39892 * 120.17258 * 318.09062 * 17 16 15 19 19 C 1.37855 * 119.82195 * 179.74522 * 18 17 16 20 20 C 1.38431 * 120.17396 * 0.53396 * 19 18 17 21 21 C 1.38388 * 120.35377 * 359.71997 * 20 19 18 22 22 C 1.37902 * 120.17490 * 0.02562 * 21 20 19 23 23 C 1.50694 * 120.09146 * 180.02562 * 22 21 20 24 24 H 1.08996 * 109.47131 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47264 * 299.99987 * 1 2 3 26 26 H 1.09003 * 109.47323 * 59.99707 * 1 2 3 27 27 H 1.09005 * 109.47201 * 240.00739 * 2 1 3 28 28 H 1.08996 * 109.47250 * 119.99925 * 2 1 3 29 29 H 1.09008 * 109.46734 * 59.99867 * 3 2 1 30 30 H 1.09003 * 109.47181 * 300.00380 * 3 2 1 31 31 H 0.97003 * 119.99855 * 180.02562 * 8 7 5 32 32 H 1.07995 * 119.99943 * 352.08932 * 15 13 4 33 33 H 1.08001 * 120.00099 * 166.78540 * 16 15 13 34 34 H 1.08004 * 120.08860 * 0.02562 * 18 17 16 35 35 H 1.08004 * 119.90936 * 180.25312 * 19 18 17 36 36 H 1.08004 * 119.81932 * 179.70116 * 20 19 18 37 37 H 1.07999 * 119.91510 * 180.02562 * 21 20 19 38 38 H 1.09004 * 109.46488 * 269.97580 * 23 22 21 39 39 H 1.08999 * 109.47524 * 29.97522 * 23 22 21 40 40 H 1.08995 * 109.47532 * 149.97988 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1891 1.5636 1.1768 6 1 5.0683 0.9623 1.3550 7 6 3.7526 2.4617 2.1457 8 7 2.8259 3.3448 1.8525 9 14 4.4847 2.4112 3.8635 10 1 5.9480 2.6513 3.7852 11 1 3.8543 3.4629 4.7014 12 1 4.2333 1.0792 4.4698 13 6 4.1784 1.3230 -1.1619 14 8 5.3960 1.3235 -1.1624 15 6 3.4467 1.1938 -2.4214 16 6 4.1122 1.2290 -3.5952 17 6 5.5115 1.6826 -3.6343 18 6 5.9125 2.7915 -2.8816 19 6 7.2264 3.2070 -2.9196 20 6 8.1456 2.5367 -3.7083 21 6 7.7557 1.4421 -4.4598 22 6 6.4462 1.0108 -4.4287 23 6 6.0238 -0.1817 -5.2474 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9564 0.8901 30 1 1.6767 1.9564 -0.8900 31 1 2.5218 3.9712 2.5279 32 1 2.3744 1.0657 -2.4123 33 1 3.6176 0.9242 -4.5057 34 1 5.1956 3.3180 -2.2690 35 1 7.5383 4.0605 -2.3358 36 1 9.1725 2.8701 -3.7374 37 1 8.4788 0.9242 -5.0724 38 1 5.6986 0.1512 -6.2331 39 1 6.8658 -0.8657 -5.3544 40 1 5.2016 -0.6932 -4.7471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491211983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:57 Heat of formation + Delta-G solvation = 9.735923 kcal Electronic energy + Delta-G solvation = -21165.800168 eV Core-core repulsion = 18139.060060 eV Total energy + Delta-G solvation = -3026.740109 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.27568 -38.09810 -35.32498 -33.36475 -32.70414 -31.97134 -31.18972 -29.11276 -26.48439 -25.95254 -24.79783 -23.01376 -21.23083 -20.77465 -20.37107 -17.91163 -16.97727 -16.45721 -15.57045 -14.96609 -14.80762 -14.49003 -13.97176 -13.76479 -13.62413 -13.49787 -13.07377 -12.65687 -12.60258 -12.31816 -12.02973 -11.93773 -11.59343 -11.56204 -11.35809 -11.16428 -10.96725 -10.71337 -10.51971 -10.41078 -10.34709 -10.31385 -9.94722 -9.26294 -8.95092 -8.48275 -8.02298 -7.39255 -7.30001 -6.32309 -4.01337 1.39513 2.07502 2.57682 3.20555 3.23319 3.27359 4.13420 4.44130 4.48993 4.92056 5.08084 5.26885 5.31037 5.41455 5.55776 5.61198 5.66607 5.69373 5.73414 5.83241 5.91181 6.01834 6.09108 6.11424 6.24581 6.28533 6.38157 6.49177 6.57401 6.61291 6.63946 6.78415 6.85451 6.95034 7.07698 7.18280 7.31611 7.33035 7.56001 7.64577 8.29518 8.55430 9.20698 9.39630 10.06763 10.69528 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017395 B = 0.006237 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.315431 B = 4488.547499 C = 5674.827595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.101 3.899 4 N -0.429 5.429 5 C -0.300 4.300 6 H 0.088 0.912 7 C 0.037 3.963 8 N -0.874 5.874 9 Si 0.921 3.079 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.475 3.525 14 O -0.565 6.565 15 C -0.173 4.173 16 C -0.080 4.080 17 C -0.045 4.045 18 C -0.023 4.023 19 C -0.138 4.138 20 C -0.118 4.118 21 C -0.142 4.142 22 C -0.082 4.082 23 C -0.109 4.109 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.047 0.953 31 H 0.269 0.731 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 -3.216 -9.419 9.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.023 4.023 4 N -0.146 5.146 5 C -0.428 4.428 6 H 0.106 0.894 7 C -0.167 4.167 8 N -0.512 5.512 9 Si 0.748 3.252 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.265 3.735 14 O -0.450 6.450 15 C -0.194 4.194 16 C -0.101 4.101 17 C -0.045 4.045 18 C -0.041 4.041 19 C -0.156 4.156 20 C -0.136 4.136 21 C -0.160 4.160 22 C -0.082 4.082 23 C -0.166 4.166 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.389 -3.051 -9.242 9.740 hybrid contribution 0.082 -0.007 1.047 1.050 sum -0.307 -3.058 -8.194 8.752 Atomic orbital electron populations 1.21675 0.96372 1.00620 1.01552 1.22019 0.94892 0.99404 1.01683 1.21719 0.82315 0.94220 1.04078 1.43398 1.04574 1.61426 1.05160 1.19365 1.11232 1.20387 0.91839 0.89445 1.25480 0.96791 0.93937 1.00482 1.69745 1.29486 1.17294 1.34626 0.86079 0.79558 0.77937 0.81632 1.19687 1.20895 1.19862 1.18305 0.87808 0.83404 0.83958 1.90724 1.13203 1.54822 1.86272 1.23452 0.99598 1.02424 0.93969 1.22048 0.93173 0.97891 0.96966 1.18663 0.92871 0.95810 0.97130 1.21132 0.95986 0.94391 0.92627 1.20874 0.93686 1.00930 1.00133 1.20996 0.98646 0.96286 0.97642 1.20656 0.95266 0.98333 1.01736 1.19861 0.93491 0.96914 0.97976 1.20725 1.01620 0.95546 0.98685 0.93505 0.92727 0.93198 0.93152 0.91858 0.86772 0.93450 0.92064 0.86160 0.86141 0.86639 0.86924 0.87191 0.87150 0.91808 0.92100 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.14 -2.56 6.04 -26.73 -0.16 -2.72 16 3 C 0.10 2.17 4.52 -4.04 -0.02 2.15 16 4 N -0.43 -10.78 2.51 -116.46 -0.29 -11.08 16 5 C -0.30 -8.23 8.87 -15.05 -0.13 -8.36 16 6 H 0.09 2.52 7.78 -52.49 -0.41 2.11 16 7 C 0.04 0.97 5.12 -17.44 -0.09 0.88 16 8 N -0.87 -23.17 11.19 55.51 0.62 -22.54 16 9 Si 0.92 20.65 29.57 -169.99 -5.03 15.62 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.47 11.60 6.46 -13.05 -0.08 11.52 16 14 O -0.57 -15.40 12.26 5.13 0.06 -15.34 16 15 C -0.17 -3.38 8.56 -37.53 -0.32 -3.70 16 16 C -0.08 -1.41 8.42 -37.12 -0.31 -1.72 16 17 C -0.04 -0.86 4.54 -105.05 -0.48 -1.33 16 18 C -0.02 -0.48 6.68 -39.10 -0.26 -0.74 16 19 C -0.14 -2.60 10.03 -39.65 -0.40 -3.00 16 20 C -0.12 -1.97 10.04 -39.46 -0.40 -2.36 16 21 C -0.14 -2.30 9.69 -39.65 -0.38 -2.68 16 22 C -0.08 -1.40 5.92 -104.14 -0.62 -2.02 16 23 C -0.11 -1.45 9.53 36.00 0.34 -1.11 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.88 7.34 -51.93 -0.38 0.50 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.11 2.72 5.49 -51.92 -0.29 2.44 16 30 H 0.05 0.95 6.56 -51.93 -0.34 0.61 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 32 H 0.12 2.05 5.99 -52.49 -0.31 1.73 16 33 H 0.12 1.66 7.82 -52.49 -0.41 1.25 16 34 H 0.12 2.62 6.98 -52.48 -0.37 2.25 16 35 H 0.11 1.95 8.06 -52.48 -0.42 1.53 16 36 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 40 H 0.06 0.88 7.03 -51.93 -0.36 0.51 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -30.36 327.46 -8.45 -38.81 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.81 Total: 6.50 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -2.94 Total: -16.91 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.33 Total: -33.62 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.06 Total: -15.34 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.36 -8.45 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491211983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.549 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds