Wall clock time and date at job start Mon Mar 30 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47282 * 2 1 4 4 N 1.46497 * 109.47363 * 180.02562 * 3 2 1 5 5 C 1.36709 * 119.99952 * 264.12134 * 4 3 2 6 6 H 1.08000 * 120.00648 * 138.76364 * 5 4 3 7 7 C 1.39130 * 119.99946 * 318.76013 * 5 4 3 8 8 N 1.31324 * 119.99803 * 348.81421 * 7 5 4 9 9 Si 1.86799 * 120.00041 * 168.80813 * 7 5 4 10 10 H 1.48497 * 109.47169 * 60.00500 * 9 7 5 11 11 H 1.48507 * 109.47030 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47266 * 300.00174 * 9 7 5 13 13 C 1.34774 * 119.99934 * 84.11187 * 4 3 2 14 14 O 1.21762 * 119.99655 * 179.97438 * 13 4 3 15 15 C 1.46231 * 120.00053 * 0.02562 * 13 4 3 16 16 C 1.34973 * 120.00043 * 172.36964 * 15 13 4 17 17 C 1.47153 * 119.99900 * 346.78827 * 16 15 13 18 18 C 1.39892 * 120.17258 * 318.09062 * 17 16 15 19 19 C 1.37855 * 119.82195 * 179.74522 * 18 17 16 20 20 C 1.38431 * 120.17396 * 0.53396 * 19 18 17 21 21 C 1.38388 * 120.35377 * 359.71997 * 20 19 18 22 22 C 1.37902 * 120.17490 * 0.02562 * 21 20 19 23 23 C 1.50694 * 120.09146 * 180.02562 * 22 21 20 24 24 H 1.08996 * 109.47131 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47264 * 299.99987 * 1 2 3 26 26 H 1.09003 * 109.47323 * 59.99707 * 1 2 3 27 27 H 1.09005 * 109.47201 * 240.00739 * 2 1 3 28 28 H 1.08996 * 109.47250 * 119.99925 * 2 1 3 29 29 H 1.09008 * 109.46734 * 59.99867 * 3 2 1 30 30 H 1.09003 * 109.47181 * 300.00380 * 3 2 1 31 31 H 0.97003 * 119.99855 * 180.02562 * 8 7 5 32 32 H 1.07995 * 119.99943 * 352.08932 * 15 13 4 33 33 H 1.08001 * 120.00099 * 166.78540 * 16 15 13 34 34 H 1.08004 * 120.08860 * 0.02562 * 18 17 16 35 35 H 1.08004 * 119.90936 * 180.25312 * 19 18 17 36 36 H 1.08004 * 119.81932 * 179.70116 * 20 19 18 37 37 H 1.07999 * 119.91510 * 180.02562 * 21 20 19 38 38 H 1.09004 * 109.46488 * 269.97580 * 23 22 21 39 39 H 1.08999 * 109.47524 * 29.97522 * 23 22 21 40 40 H 1.08995 * 109.47532 * 149.97988 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1891 1.5636 1.1768 6 1 5.0683 0.9623 1.3550 7 6 3.7526 2.4617 2.1457 8 7 2.8259 3.3448 1.8525 9 14 4.4847 2.4112 3.8635 10 1 5.9480 2.6513 3.7852 11 1 3.8543 3.4629 4.7014 12 1 4.2333 1.0792 4.4698 13 6 4.1784 1.3230 -1.1619 14 8 5.3960 1.3235 -1.1624 15 6 3.4467 1.1938 -2.4214 16 6 4.1122 1.2290 -3.5952 17 6 5.5115 1.6826 -3.6343 18 6 5.9125 2.7915 -2.8816 19 6 7.2264 3.2070 -2.9196 20 6 8.1456 2.5367 -3.7083 21 6 7.7557 1.4421 -4.4598 22 6 6.4462 1.0108 -4.4287 23 6 6.0238 -0.1817 -5.2474 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9564 0.8901 30 1 1.6767 1.9564 -0.8900 31 1 2.5218 3.9712 2.5279 32 1 2.3744 1.0657 -2.4123 33 1 3.6176 0.9242 -4.5057 34 1 5.1956 3.3180 -2.2690 35 1 7.5383 4.0605 -2.3358 36 1 9.1725 2.8701 -3.7374 37 1 8.4788 0.9242 -5.0724 38 1 5.6986 0.1512 -6.2331 39 1 6.8658 -0.8657 -5.3544 40 1 5.2016 -0.6932 -4.7471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491211983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:56 Heat of formation + Delta-G solvation = -5.986367 kcal Electronic energy + Delta-G solvation = -21166.481938 eV Core-core repulsion = 18139.060060 eV Total energy + Delta-G solvation = -3027.421878 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88701 -39.68284 -37.10693 -34.91576 -34.33564 -33.33548 -32.96032 -30.57556 -27.92876 -27.48384 -26.45604 -24.59487 -22.73191 -22.23270 -21.86251 -19.58078 -18.79791 -18.18258 -17.14397 -16.74886 -16.24498 -16.04724 -15.54712 -15.35926 -15.26883 -14.86311 -14.43066 -14.12512 -13.98890 -13.80579 -13.49597 -13.31669 -13.13170 -13.04005 -12.98550 -12.68922 -12.58514 -12.31501 -12.10888 -11.96254 -11.88089 -11.74925 -11.54071 -10.90522 -10.73170 -10.26415 -9.49374 -9.22734 -8.85515 -8.30771 -6.09364 -0.06070 0.67364 1.13005 1.36881 1.40371 1.47051 2.26887 2.62758 3.04443 3.14284 3.20071 3.93577 4.03192 4.11236 4.15522 4.21991 4.26726 4.37558 4.51441 4.55037 4.61400 4.74893 4.77864 4.87510 4.91033 4.99705 5.04296 5.15183 5.19200 5.29597 5.31102 5.36199 5.39968 5.43867 5.50077 5.64551 5.70535 5.77847 5.90756 6.25088 6.28495 6.62285 7.22195 7.50804 8.16290 8.68963 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017395 B = 0.006237 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.315431 B = 4488.547499 C = 5674.827595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.104 3.896 4 N -0.448 5.448 5 C -0.332 4.332 6 H 0.058 0.942 7 C 0.003 3.997 8 N -0.893 5.893 9 Si 0.980 3.020 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.264 1.264 13 C 0.467 3.533 14 O -0.605 6.605 15 C -0.202 4.202 16 C -0.046 4.046 17 C -0.076 4.076 18 C -0.049 4.049 19 C -0.162 4.162 20 C -0.116 4.116 21 C -0.144 4.144 22 C -0.083 4.083 23 C -0.108 4.108 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.273 0.727 32 H 0.147 0.853 33 H 0.170 0.830 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 -4.626 -11.642 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C -0.019 4.019 4 N -0.165 5.165 5 C -0.461 4.461 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.531 5.531 9 Si 0.804 3.196 10 H -0.206 1.206 11 H -0.194 1.194 12 H -0.189 1.189 13 C 0.259 3.741 14 O -0.493 6.493 15 C -0.222 4.222 16 C -0.066 4.066 17 C -0.076 4.076 18 C -0.068 4.068 19 C -0.181 4.181 20 C -0.134 4.134 21 C -0.161 4.161 22 C -0.083 4.083 23 C -0.164 4.164 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.165 0.835 33 H 0.187 0.813 34 H 0.095 0.905 35 H 0.131 0.869 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.656 -4.463 -11.474 12.329 hybrid contribution 0.304 0.458 1.574 1.667 sum -0.352 -4.006 -9.900 10.686 Atomic orbital electron populations 1.21624 0.93219 1.02370 1.02185 1.21902 0.97478 0.96639 1.01009 1.21737 0.80426 0.96444 1.03280 1.43621 1.05917 1.62132 1.04827 1.19260 1.11557 1.21371 0.93876 0.92393 1.26155 0.97066 0.93221 1.03499 1.69833 1.30063 1.17506 1.35649 0.85205 0.78154 0.78614 0.77640 1.20617 1.19371 1.18876 1.19111 0.87760 0.81793 0.85396 1.90681 1.15096 1.56286 1.87215 1.23315 1.00673 1.06091 0.92162 1.22573 0.92335 0.93775 0.97928 1.18978 0.94544 0.96032 0.98084 1.21004 0.96225 0.95958 0.93616 1.21064 0.93729 1.01875 1.01400 1.21375 0.99572 0.95979 0.96433 1.21165 0.95821 0.97832 1.01327 1.20381 0.93421 0.97451 0.97034 1.20815 1.02324 0.94050 0.99220 0.91163 0.93255 0.91439 0.92287 0.94040 0.89285 0.92265 0.91720 0.83509 0.81317 0.90456 0.86937 0.84123 0.83430 0.88947 0.90344 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.13 -4.74 6.04 30.60 0.18 -4.56 16 3 C 0.10 4.62 4.52 86.38 0.39 5.01 16 4 N -0.45 -23.61 2.51 -640.55 -1.61 -25.22 16 5 C -0.33 -19.30 8.87 84.15 0.75 -18.55 16 6 H 0.06 3.61 7.78 -2.91 -0.02 3.58 16 7 C 0.00 0.14 5.12 84.98 0.44 0.58 16 8 N -0.89 -48.95 11.19 21.69 0.24 -48.71 16 9 Si 0.98 43.70 29.57 68.60 2.03 45.73 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 13 C 0.47 23.81 6.46 86.32 0.56 24.36 16 14 O -0.61 -34.79 12.26 -4.55 -0.06 -34.85 16 15 C -0.20 -7.81 8.56 23.60 0.20 -7.61 16 16 C -0.05 -1.54 8.42 23.86 0.20 -1.34 16 17 C -0.08 -2.88 4.54 -20.14 -0.09 -2.98 16 18 C -0.05 -2.15 6.68 22.58 0.15 -2.00 16 19 C -0.16 -6.32 10.03 22.22 0.22 -6.10 16 20 C -0.12 -3.71 10.04 22.35 0.22 -3.48 16 21 C -0.14 -4.23 9.69 22.23 0.22 -4.02 16 22 C -0.08 -2.60 5.92 -19.55 -0.12 -2.72 16 23 C -0.11 -2.39 9.53 71.23 0.68 -1.71 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 2.01 7.34 -2.38 -0.02 1.99 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 29 H 0.09 4.40 5.49 -2.38 -0.01 4.39 16 30 H 0.06 2.40 6.56 -2.39 -0.02 2.39 16 31 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.15 4.77 5.99 -2.91 -0.02 4.75 16 33 H 0.17 3.91 7.82 -2.91 -0.02 3.89 16 34 H 0.08 3.83 6.98 -2.91 -0.02 3.81 16 35 H 0.11 4.16 8.06 -2.91 -0.02 4.13 16 36 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 37 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.49 8.09 -2.39 -0.02 1.48 16 40 H 0.06 1.45 7.03 -2.39 -0.02 1.43 16 Total: -1.00 -71.21 327.46 6.34 -64.87 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 1.02 Total: 26.28 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 4.72 Total: -28.10 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -1.37 Total: -73.93 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.06 Total: -34.85 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -71.21 6.34 -64.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491211983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.880 kcal (2) G-P(sol) polarization free energy of solvation -71.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds