Wall clock time and date at job start Mon Mar 30 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47241 * 2 1 4 4 N 1.46500 * 109.47048 * 180.02562 * 3 2 1 5 5 C 1.36710 * 120.00191 * 264.61805 * 4 3 2 6 6 H 1.07994 * 119.99672 * 141.67883 * 5 4 3 7 7 C 1.39123 * 120.00244 * 321.67795 * 5 4 3 8 8 N 1.31323 * 119.99733 * 339.38304 * 7 5 4 9 9 Si 1.86797 * 120.00062 * 159.37747 * 7 5 4 10 10 H 1.48503 * 109.47224 * 60.00510 * 9 7 5 11 11 H 1.48508 * 109.47054 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47309 * 300.00022 * 9 7 5 13 13 C 1.34776 * 119.99709 * 84.62286 * 4 3 2 14 14 O 1.21760 * 119.99917 * 179.97438 * 13 4 3 15 15 C 1.46234 * 120.00330 * 359.97438 * 13 4 3 16 16 C 1.34978 * 120.00102 * 180.02562 * 15 13 4 17 17 C 1.47141 * 119.99695 * 180.02562 * 16 15 13 18 18 C 1.39895 * 120.17493 * 0.02562 * 17 16 15 19 19 C 1.37858 * 119.82258 * 179.97438 * 18 17 16 20 20 C 1.38433 * 120.17539 * 359.97438 * 19 18 17 21 21 C 1.38393 * 120.35081 * 359.72962 * 20 19 18 22 22 C 1.50696 * 119.91373 * 180.27704 * 21 20 19 23 23 C 1.37901 * 120.17132 * 0.55168 * 21 20 19 24 24 H 1.09005 * 109.47291 * 299.99401 * 1 2 3 25 25 H 1.09000 * 109.47587 * 59.99476 * 1 2 3 26 26 H 1.09001 * 109.47433 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46779 * 240.00710 * 2 1 3 28 28 H 1.09000 * 109.47587 * 120.00524 * 2 1 3 29 29 H 1.09004 * 109.46654 * 60.00634 * 3 2 1 30 30 H 1.08997 * 109.46799 * 300.00512 * 3 2 1 31 31 H 0.97003 * 119.99483 * 179.97438 * 8 7 5 32 32 H 1.07997 * 119.99482 * 0.02562 * 15 13 4 33 33 H 1.07994 * 119.99782 * 359.97438 * 16 15 13 34 34 H 1.08005 * 120.09076 * 359.97438 * 18 17 16 35 35 H 1.08004 * 119.91592 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.82583 * 179.97438 * 20 19 18 37 37 H 1.09003 * 109.47239 * 270.27614 * 22 21 20 38 38 H 1.09006 * 109.47393 * 30.27650 * 22 21 20 39 39 H 1.09006 * 109.47525 * 150.27345 * 22 21 20 40 40 H 1.08001 * 120.08379 * 179.71844 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1891 1.5533 1.1778 6 1 5.0945 0.9853 1.3320 7 6 3.7188 2.3978 2.1784 8 7 2.8890 3.3710 1.8800 9 14 4.2675 2.1474 3.9463 10 1 5.7443 2.2800 4.0298 11 1 3.6285 3.1704 4.8126 12 1 3.8656 0.7924 4.4022 13 6 4.1783 1.3332 -1.1630 14 8 5.3959 1.3337 -1.1636 15 6 3.4466 1.2142 -2.4235 16 6 4.1210 1.1043 -3.5876 17 6 3.3847 0.9851 -4.8559 18 6 1.9857 0.9858 -4.8596 19 6 1.3032 0.8743 -6.0521 20 6 1.9985 0.7623 -7.2440 21 6 3.3824 0.7669 -7.2493 22 6 4.1293 0.6507 -8.5530 23 6 4.0797 0.8719 -6.0642 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 2.5609 3.9595 2.5778 32 1 2.3666 1.2143 -2.4230 33 1 5.2009 1.1047 -3.5880 34 1 1.4418 1.0736 -3.9306 35 1 0.2232 0.8751 -6.0568 36 1 1.4581 0.6748 -8.1749 37 1 4.3089 -0.4010 -8.7764 38 1 3.5366 1.0959 -9.3523 39 1 5.0826 1.1732 -8.4735 40 1 5.1597 0.8708 -6.0696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491248457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:05 Heat of formation + Delta-G solvation = -4.803117 kcal Electronic energy + Delta-G solvation = -20315.585974 eV Core-core repulsion = 17288.215406 eV Total energy + Delta-G solvation = -3027.370569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.32206 -38.49195 -35.34859 -34.05046 -32.82627 -32.06234 -31.22553 -29.60355 -26.83154 -26.04094 -24.97226 -23.13624 -21.97882 -21.03109 -20.09657 -17.85949 -17.14968 -16.70407 -15.98713 -15.27489 -14.85702 -14.61943 -14.28588 -13.85897 -13.79670 -13.63715 -13.25078 -13.07851 -12.91675 -12.53924 -12.27062 -12.18882 -11.73660 -11.64815 -11.40935 -11.35209 -11.04582 -10.98636 -10.77422 -10.62379 -10.37467 -10.34602 -9.97245 -9.83791 -8.96687 -8.69417 -8.43584 -7.88343 -7.46271 -6.39287 -3.98305 0.92699 1.45874 2.48546 3.19626 3.22944 3.26661 3.92927 4.11205 4.47910 4.70747 4.82677 4.90837 4.98640 5.10574 5.18043 5.31557 5.48143 5.49949 5.57102 5.58986 5.64997 5.69327 5.77702 5.85608 6.04838 6.06508 6.18143 6.24681 6.36615 6.43459 6.44737 6.52667 6.57636 6.60402 6.87040 6.96418 7.04026 7.09964 7.21948 7.53133 8.24685 8.50085 9.16893 9.36161 10.02336 10.64463 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.004087 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.471809 B = 6848.667553 C = 7555.283928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.104 3.896 4 N -0.425 5.425 5 C -0.308 4.308 6 H 0.092 0.908 7 C 0.039 3.961 8 N -0.862 5.862 9 Si 0.919 3.081 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.474 3.526 14 O -0.588 6.588 15 C -0.154 4.154 16 C -0.090 4.090 17 C -0.040 4.040 18 C -0.120 4.120 19 C -0.115 4.115 20 C -0.129 4.129 21 C -0.090 4.090 22 C -0.113 4.113 23 C -0.111 4.111 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.270 0.730 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 -4.882 -13.491 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.020 4.020 4 N -0.142 5.142 5 C -0.436 4.436 6 H 0.110 0.890 7 C -0.167 4.167 8 N -0.499 5.499 9 Si 0.745 3.255 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.265 3.735 14 O -0.474 6.474 15 C -0.175 4.175 16 C -0.111 4.111 17 C -0.040 4.040 18 C -0.138 4.138 19 C -0.133 4.133 20 C -0.147 4.147 21 C -0.090 4.090 22 C -0.169 4.169 23 C -0.129 4.129 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.853 -4.701 -13.320 15.290 hybrid contribution -0.039 0.037 0.916 0.917 sum -5.892 -4.664 -12.405 14.503 Atomic orbital electron populations 1.21680 0.96279 1.00762 1.01552 1.22014 0.94944 0.99109 1.01957 1.21639 0.82117 0.94505 1.03732 1.43378 1.04615 1.61146 1.05026 1.19415 1.09983 1.23958 0.90229 0.89030 1.25452 0.97027 0.93432 1.00745 1.69903 1.32230 1.13808 1.33951 0.86116 0.79355 0.78161 0.81833 1.19575 1.20878 1.19744 1.18234 0.87618 0.83761 0.83847 1.90637 1.13670 1.56113 1.86937 1.23459 0.99958 1.00126 0.93965 1.22123 0.99938 0.98871 0.90132 1.19159 0.93084 0.98508 0.93229 1.21443 0.93630 1.00333 0.98372 1.21029 0.99703 1.00158 0.92416 1.21039 0.93581 1.02172 0.97944 1.19810 0.93913 1.00096 0.95165 1.20777 0.99949 1.02141 0.94057 1.21227 0.99746 1.00745 0.91188 0.92723 0.93172 0.93358 0.92942 0.91636 0.87504 0.93203 0.91974 0.86345 0.85221 0.85637 0.86111 0.86468 0.91329 0.91739 0.91550 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.91 37.15 0.37 -1.71 16 2 C -0.14 -2.55 6.11 -26.73 -0.16 -2.72 16 3 C 0.10 2.26 4.56 -4.04 -0.02 2.24 16 4 N -0.43 -10.95 2.52 -116.46 -0.29 -11.25 16 5 C -0.31 -8.58 8.88 -15.05 -0.13 -8.71 16 6 H 0.09 2.66 7.78 -52.49 -0.41 2.26 16 7 C 0.04 1.03 4.91 -17.44 -0.09 0.94 16 8 N -0.86 -23.11 11.55 55.50 0.64 -22.47 16 9 Si 0.92 20.43 29.60 -169.99 -5.03 15.40 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.47 12.13 7.52 -13.05 -0.10 12.03 16 14 O -0.59 -17.08 16.11 5.13 0.08 -17.00 16 15 C -0.15 -3.12 8.12 -37.53 -0.30 -3.42 16 16 C -0.09 -1.65 9.46 -37.13 -0.35 -2.00 16 17 C -0.04 -0.61 5.87 -105.06 -0.62 -1.23 16 18 C -0.12 -1.68 9.41 -39.10 -0.37 -2.05 16 19 C -0.12 -1.37 10.03 -39.65 -0.40 -1.77 16 20 C -0.13 -1.46 9.69 -39.45 -0.38 -1.84 16 21 C -0.09 -1.06 5.87 -104.69 -0.61 -1.67 16 22 C -0.11 -0.98 10.00 36.00 0.36 -0.62 16 23 C -0.11 -1.51 9.44 -39.10 -0.37 -1.88 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.92 7.56 -51.93 -0.39 0.53 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.11 2.53 5.62 -51.93 -0.29 2.24 16 30 H 0.05 1.00 6.41 -51.93 -0.33 0.67 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.12 2.10 4.16 -52.49 -0.22 1.89 16 33 H 0.13 2.49 7.52 -52.49 -0.39 2.09 16 34 H 0.13 1.68 6.17 -52.48 -0.32 1.35 16 35 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 39 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -31.35 335.47 -8.44 -39.79 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.72 Total: 4.89 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -3.18 Total: -14.41 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.35 Total: -33.72 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.08 Total: -17.00 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.35 -8.44 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491248457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.988 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds