Wall clock time and date at job start Mon Mar 30 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47241 * 2 1 4 4 N 1.46500 * 109.47048 * 180.02562 * 3 2 1 5 5 C 1.36710 * 120.00191 * 264.61805 * 4 3 2 6 6 H 1.07994 * 119.99672 * 141.67883 * 5 4 3 7 7 C 1.39123 * 120.00244 * 321.67795 * 5 4 3 8 8 N 1.31323 * 119.99733 * 339.38304 * 7 5 4 9 9 Si 1.86797 * 120.00062 * 159.37747 * 7 5 4 10 10 H 1.48503 * 109.47224 * 60.00510 * 9 7 5 11 11 H 1.48508 * 109.47054 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47309 * 300.00022 * 9 7 5 13 13 C 1.34776 * 119.99709 * 84.62286 * 4 3 2 14 14 O 1.21760 * 119.99917 * 179.97438 * 13 4 3 15 15 C 1.46234 * 120.00330 * 359.97438 * 13 4 3 16 16 C 1.34978 * 120.00102 * 180.02562 * 15 13 4 17 17 C 1.47141 * 119.99695 * 180.02562 * 16 15 13 18 18 C 1.39895 * 120.17493 * 0.02562 * 17 16 15 19 19 C 1.37858 * 119.82258 * 179.97438 * 18 17 16 20 20 C 1.38433 * 120.17539 * 359.97438 * 19 18 17 21 21 C 1.38393 * 120.35081 * 359.72962 * 20 19 18 22 22 C 1.50696 * 119.91373 * 180.27704 * 21 20 19 23 23 C 1.37901 * 120.17132 * 0.55168 * 21 20 19 24 24 H 1.09005 * 109.47291 * 299.99401 * 1 2 3 25 25 H 1.09000 * 109.47587 * 59.99476 * 1 2 3 26 26 H 1.09001 * 109.47433 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46779 * 240.00710 * 2 1 3 28 28 H 1.09000 * 109.47587 * 120.00524 * 2 1 3 29 29 H 1.09004 * 109.46654 * 60.00634 * 3 2 1 30 30 H 1.08997 * 109.46799 * 300.00512 * 3 2 1 31 31 H 0.97003 * 119.99483 * 179.97438 * 8 7 5 32 32 H 1.07997 * 119.99482 * 0.02562 * 15 13 4 33 33 H 1.07994 * 119.99782 * 359.97438 * 16 15 13 34 34 H 1.08005 * 120.09076 * 359.97438 * 18 17 16 35 35 H 1.08004 * 119.91592 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.82583 * 179.97438 * 20 19 18 37 37 H 1.09003 * 109.47239 * 270.27614 * 22 21 20 38 38 H 1.09006 * 109.47393 * 30.27650 * 22 21 20 39 39 H 1.09006 * 109.47525 * 150.27345 * 22 21 20 40 40 H 1.08001 * 120.08379 * 179.71844 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1891 1.5533 1.1778 6 1 5.0945 0.9853 1.3320 7 6 3.7188 2.3978 2.1784 8 7 2.8890 3.3710 1.8800 9 14 4.2675 2.1474 3.9463 10 1 5.7443 2.2800 4.0298 11 1 3.6285 3.1704 4.8126 12 1 3.8656 0.7924 4.4022 13 6 4.1783 1.3332 -1.1630 14 8 5.3959 1.3337 -1.1636 15 6 3.4466 1.2142 -2.4235 16 6 4.1210 1.1043 -3.5876 17 6 3.3847 0.9851 -4.8559 18 6 1.9857 0.9858 -4.8596 19 6 1.3032 0.8743 -6.0521 20 6 1.9985 0.7623 -7.2440 21 6 3.3824 0.7669 -7.2493 22 6 4.1293 0.6507 -8.5530 23 6 4.0797 0.8719 -6.0642 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 2.5609 3.9595 2.5778 32 1 2.3666 1.2143 -2.4230 33 1 5.2009 1.1047 -3.5880 34 1 1.4418 1.0736 -3.9306 35 1 0.2232 0.8751 -6.0568 36 1 1.4581 0.6748 -8.1749 37 1 4.3089 -0.4010 -8.7764 38 1 3.5366 1.0959 -9.3523 39 1 5.0826 1.1732 -8.4735 40 1 5.1597 0.8708 -6.0696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491248457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:05 Heat of formation + Delta-G solvation = -21.313582 kcal Electronic energy + Delta-G solvation = -20316.301922 eV Core-core repulsion = 17288.215406 eV Total energy + Delta-G solvation = -3028.086516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67477 -40.05999 -37.21297 -35.38193 -34.52412 -33.07755 -33.03327 -30.89275 -27.88872 -27.60668 -26.62490 -24.63548 -22.97170 -22.51724 -21.56020 -19.43477 -18.92702 -18.36054 -17.25999 -16.97226 -16.38719 -15.79426 -15.68167 -15.54815 -15.38459 -14.68735 -14.63053 -14.34769 -14.03984 -14.01724 -13.47345 -13.33583 -13.13703 -13.05200 -13.00530 -12.87169 -12.59031 -12.29042 -12.12715 -12.05019 -12.00251 -11.77263 -11.57789 -11.14246 -10.91419 -10.46817 -9.66152 -9.50384 -9.10030 -8.40196 -6.10169 -0.32816 0.48811 1.12758 1.39206 1.42713 1.50222 2.26093 2.49211 2.93077 3.05083 3.09221 3.74602 3.83361 4.03174 4.09296 4.19719 4.23683 4.32466 4.39384 4.48467 4.50806 4.58998 4.73585 4.81236 4.87516 4.95177 4.97321 5.03495 5.12792 5.21566 5.27320 5.31938 5.35153 5.37937 5.45388 5.56277 5.58459 5.69201 5.75810 6.10377 6.18211 6.52351 7.13432 7.39911 8.04030 8.62529 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.004087 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.471809 B = 6848.667553 C = 7555.283928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.107 3.893 4 N -0.438 5.438 5 C -0.349 4.349 6 H 0.063 0.937 7 C 0.008 3.992 8 N -0.883 5.883 9 Si 0.984 3.016 10 H -0.277 1.277 11 H -0.268 1.268 12 H -0.262 1.262 13 C 0.461 3.539 14 O -0.642 6.642 15 C -0.185 4.185 16 C -0.053 4.053 17 C -0.075 4.075 18 C -0.125 4.125 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.095 4.095 22 C -0.112 4.112 23 C -0.117 4.117 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.277 0.723 32 H 0.144 0.856 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.754 -5.404 -15.767 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C -0.016 4.016 4 N -0.154 5.154 5 C -0.478 4.478 6 H 0.081 0.919 7 C -0.196 4.196 8 N -0.519 5.519 9 Si 0.806 3.194 10 H -0.202 1.202 11 H -0.192 1.192 12 H -0.186 1.186 13 C 0.254 3.746 14 O -0.532 6.532 15 C -0.205 4.205 16 C -0.074 4.074 17 C -0.075 4.075 18 C -0.143 4.143 19 C -0.135 4.135 20 C -0.135 4.135 21 C -0.095 4.095 22 C -0.168 4.168 23 C -0.136 4.136 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.162 0.838 33 H 0.130 0.870 34 H 0.146 0.854 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.319 -5.224 -15.605 18.439 hybrid contribution 0.730 0.199 1.330 1.530 sum -7.589 -5.024 -14.275 16.929 Atomic orbital electron populations 1.21633 0.92893 1.02554 1.02357 1.21903 0.97722 0.96260 1.01217 1.21731 0.79836 0.96870 1.03197 1.43623 1.06204 1.61008 1.04560 1.19369 1.10532 1.25555 0.92303 0.91934 1.26204 0.96765 0.92496 1.04152 1.69963 1.32632 1.13992 1.35324 0.85161 0.78459 0.78854 0.76882 1.20229 1.19193 1.18636 1.19073 0.87410 0.82550 0.85557 1.90571 1.16018 1.58590 1.88001 1.23119 1.00747 1.04886 0.91786 1.22270 0.99325 0.94502 0.91327 1.19069 0.93969 1.02232 0.92202 1.21602 0.92939 1.00056 0.99682 1.21393 1.01291 0.99098 0.91674 1.21532 0.93490 0.99311 0.99137 1.20198 0.94634 0.99038 0.95627 1.20842 1.00040 1.03139 0.92805 1.21427 1.00279 1.00401 0.91448 0.92949 0.91359 0.91052 0.92511 0.93573 0.89602 0.91856 0.91336 0.83821 0.87019 0.85384 0.83153 0.83099 0.90198 0.89830 0.91330 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.94 16 2 C -0.13 -4.79 6.11 30.59 0.19 -4.60 16 3 C 0.11 4.74 4.56 86.38 0.39 5.13 16 4 N -0.44 -23.79 2.52 -640.57 -1.61 -25.40 16 5 C -0.35 -20.63 8.88 84.15 0.75 -19.89 16 6 H 0.06 3.94 7.78 -2.91 -0.02 3.92 16 7 C 0.01 0.42 4.91 84.98 0.42 0.83 16 8 N -0.88 -48.35 11.55 21.69 0.25 -48.10 16 9 Si 0.98 42.84 29.60 68.60 2.03 44.87 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 12 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 13 C 0.46 25.02 7.52 86.32 0.65 25.67 16 14 O -0.64 -40.06 16.11 -4.54 -0.07 -40.13 16 15 C -0.18 -7.74 8.12 23.60 0.19 -7.55 16 16 C -0.05 -2.02 9.46 23.86 0.23 -1.79 16 17 C -0.07 -2.25 5.87 -20.15 -0.12 -2.37 16 18 C -0.12 -3.24 9.41 22.58 0.21 -3.03 16 19 C -0.12 -2.34 10.03 22.23 0.22 -2.11 16 20 C -0.12 -2.12 9.69 22.35 0.22 -1.90 16 21 C -0.09 -1.93 5.87 -19.91 -0.12 -2.05 16 22 C -0.11 -1.54 10.00 71.23 0.71 -0.82 16 23 C -0.12 -3.03 9.44 22.58 0.21 -2.82 16 24 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 1.99 7.56 -2.39 -0.02 1.97 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 4.18 5.62 -2.39 -0.01 4.16 16 30 H 0.06 2.57 6.41 -2.39 -0.02 2.55 16 31 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.14 5.12 4.16 -2.91 -0.01 5.11 16 33 H 0.11 4.56 7.52 -2.91 -0.02 4.54 16 34 H 0.13 3.18 6.17 -2.91 -0.02 3.16 16 35 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.86 8.09 -2.38 -0.02 0.84 16 39 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 40 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -72.83 335.47 6.49 -66.35 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 1.02 Total: 22.65 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 4.87 Total: -20.23 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -1.36 Total: -73.50 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.07 Total: -40.13 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -72.83 6.49 -66.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491248457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.032 kcal (2) G-P(sol) polarization free energy of solvation -72.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds