Wall clock time and date at job start Mon Mar 30 2020 02:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47435 * 2 1 4 4 N 1.46493 * 109.47784 * 179.97438 * 3 2 1 5 5 C 1.36717 * 119.99937 * 95.90209 * 4 3 2 6 6 H 1.07999 * 120.00259 * 220.52532 * 5 4 3 7 7 C 1.39125 * 119.99818 * 40.52801 * 5 4 3 8 8 N 1.31319 * 120.00081 * 17.95669 * 7 5 4 9 9 Si 1.86803 * 119.99723 * 197.95548 * 7 5 4 10 10 H 1.48497 * 109.47514 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46706 * 120.00336 * 9 7 5 12 12 H 1.48504 * 109.46966 * 239.99848 * 9 7 5 13 13 C 1.34777 * 120.00244 * 275.91261 * 4 3 2 14 14 O 1.21763 * 120.00340 * 179.97438 * 13 4 3 15 15 C 1.46226 * 119.99903 * 359.97438 * 13 4 3 16 16 C 1.34981 * 120.00191 * 171.96561 * 15 13 4 17 17 C 1.47147 * 119.99762 * 349.04307 * 16 15 13 18 18 C 1.39895 * 120.16850 * 136.92063 * 17 16 15 19 19 C 1.37857 * 119.82079 * 179.97438 * 18 17 16 20 20 C 1.38437 * 120.17511 * 0.02562 * 19 18 17 21 21 C 1.38401 * 120.34947 * 359.97303 * 20 19 18 22 22 C 1.50697 * 119.91112 * 180.02562 * 21 20 19 23 23 C 1.37896 * 120.17302 * 359.79107 * 21 20 19 24 24 H 1.09003 * 109.47309 * 299.99864 * 1 2 3 25 25 H 1.08997 * 109.46932 * 60.00135 * 1 2 3 26 26 H 1.09000 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47310 * 239.99578 * 2 1 3 28 28 H 1.08997 * 109.46932 * 119.99865 * 2 1 3 29 29 H 1.09003 * 109.47216 * 59.99521 * 3 2 1 30 30 H 1.09008 * 109.47062 * 300.00351 * 3 2 1 31 31 H 0.97002 * 120.00339 * 179.97438 * 8 7 5 32 32 H 1.08007 * 120.00110 * 351.96407 * 15 13 4 33 33 H 1.07994 * 119.99982 * 169.04526 * 16 15 13 34 34 H 1.07999 * 120.09161 * 359.95503 * 18 17 16 35 35 H 1.07997 * 119.91496 * 180.02562 * 19 18 17 36 36 H 1.07990 * 119.82804 * 179.97438 * 20 19 18 37 37 H 1.08994 * 109.47099 * 90.00041 * 22 21 20 38 38 H 1.08999 * 109.46848 * 210.00392 * 22 21 20 39 39 H 1.09006 * 109.47364 * 330.00072 * 22 21 20 40 40 H 1.07997 * 120.09022 * 180.23059 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.5641 -1.1769 6 1 5.0749 0.9712 -1.3505 7 6 3.7441 2.4518 -2.1513 8 7 2.9065 3.4115 -1.8321 9 14 4.3381 2.2784 -3.9139 10 1 5.2691 1.1257 -4.0114 11 1 3.1745 2.0514 -4.8083 12 1 5.0423 3.5201 -4.3233 13 6 4.1784 1.3225 1.1619 14 8 5.3961 1.3221 1.1624 15 6 3.4468 1.1928 2.4213 16 6 4.1113 0.9106 3.5619 17 6 5.5224 0.4972 3.5082 18 6 6.4434 1.0199 4.4223 19 6 7.7637 0.6272 4.3659 20 6 8.1790 -0.2814 3.4075 21 6 7.2740 -0.8030 2.4996 22 6 7.7368 -1.7918 1.4609 23 6 5.9490 -0.4239 2.5462 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.5965 4.0307 -2.5114 32 1 2.3747 1.3227 2.4389 33 1 3.6071 0.9883 4.5138 34 1 6.1211 1.7293 5.1701 35 1 8.4758 1.0294 5.0711 36 1 9.2147 -0.5848 3.3681 37 1 7.6460 -2.8034 1.8564 38 1 7.1209 -1.6945 0.5669 39 1 8.7782 -1.5926 1.2081 40 1 5.2431 -0.8346 1.8394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491248458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:09 Heat of formation + Delta-G solvation = 9.372600 kcal Electronic energy + Delta-G solvation = -21177.484324 eV Core-core repulsion = 18150.728460 eV Total energy + Delta-G solvation = -3026.755864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.24441 -38.09320 -35.36366 -33.49926 -32.73673 -31.76534 -31.22254 -29.07846 -26.47003 -26.00158 -24.86236 -23.00005 -21.25022 -20.93851 -20.32160 -17.83595 -16.90803 -16.43384 -15.84983 -14.96840 -14.70361 -14.54287 -13.99243 -13.78497 -13.59907 -13.30912 -13.01961 -12.77401 -12.68907 -12.41947 -11.89865 -11.78262 -11.64599 -11.53363 -11.35516 -11.29885 -11.02924 -10.69620 -10.55873 -10.48148 -10.35973 -10.31147 -9.97419 -9.24423 -8.96770 -8.46805 -8.01734 -7.45991 -7.25460 -6.36958 -3.99879 1.41560 2.05902 2.55588 3.15239 3.23799 3.29669 4.11958 4.40893 4.47426 4.90258 5.05026 5.27410 5.34763 5.37332 5.57394 5.61712 5.63110 5.70483 5.80924 5.90030 5.95392 5.96548 6.06986 6.17706 6.22742 6.25147 6.36429 6.45302 6.56518 6.60294 6.64533 6.75920 6.84575 6.91016 7.04035 7.17310 7.23125 7.29639 7.53742 7.62272 8.28150 8.53176 9.20360 9.38314 10.06779 10.66731 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.006192 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.240563 B = 4520.827493 C = 5339.787104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.106 3.894 4 N -0.427 5.427 5 C -0.303 4.303 6 H 0.090 0.910 7 C 0.038 3.962 8 N -0.866 5.866 9 Si 0.917 3.083 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.472 3.528 14 O -0.564 6.564 15 C -0.172 4.172 16 C -0.085 4.085 17 C -0.043 4.043 18 C -0.116 4.116 19 C -0.138 4.138 20 C -0.120 4.120 21 C -0.104 4.104 22 C -0.107 4.107 23 C -0.022 4.022 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.268 0.732 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 -7.032 7.657 10.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.019 4.019 4 N -0.143 5.143 5 C -0.431 4.431 6 H 0.108 0.892 7 C -0.167 4.167 8 N -0.503 5.503 9 Si 0.743 3.257 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.207 1.207 13 C 0.262 3.738 14 O -0.449 6.449 15 C -0.193 4.193 16 C -0.105 4.105 17 C -0.043 4.043 18 C -0.134 4.134 19 C -0.156 4.156 20 C -0.139 4.139 21 C -0.105 4.105 22 C -0.164 4.164 23 C -0.040 4.040 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.023 -6.854 7.480 10.146 hybrid contribution -0.048 0.364 -0.937 1.006 sum -0.071 -6.491 6.543 9.217 Atomic orbital electron populations 1.21680 0.96351 1.00705 1.01547 1.22005 0.94906 0.99181 1.01788 1.21600 0.82381 0.94323 1.03557 1.43454 1.04477 1.61251 1.05142 1.19439 1.11289 1.21244 0.91142 0.89200 1.25475 0.96951 0.93590 1.00661 1.69885 1.32553 1.13693 1.34131 0.86021 0.78712 0.78636 0.82306 1.19093 1.20551 1.20676 1.18378 0.87875 0.83779 0.83727 1.90723 1.13155 1.55003 1.86062 1.23447 0.99581 1.01760 0.94542 1.22089 0.93101 0.98191 0.97160 1.18785 0.93122 0.96772 0.95610 1.21060 0.93327 1.00012 0.99018 1.20761 0.95673 0.99501 0.99711 1.20888 0.98452 0.98423 0.96100 1.19642 0.93799 0.99551 0.97463 1.20693 1.01237 0.96944 0.97512 1.20931 0.94965 0.94356 0.93776 0.93155 0.92776 0.93417 0.91782 0.92983 0.93234 0.87776 0.92161 0.86159 0.86105 0.86965 0.87069 0.87240 0.92173 0.91532 0.92203 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.91 37.16 0.37 -1.70 16 2 C -0.14 -2.48 6.17 -26.73 -0.16 -2.64 16 3 C 0.11 2.25 4.57 -4.05 -0.02 2.24 16 4 N -0.43 -10.68 2.50 -116.47 -0.29 -10.97 16 5 C -0.30 -8.28 8.85 -15.04 -0.13 -8.41 16 6 H 0.09 2.57 7.80 -52.49 -0.41 2.16 16 7 C 0.04 1.01 4.96 -17.44 -0.09 0.92 16 8 N -0.87 -23.25 11.55 55.50 0.64 -22.60 16 9 Si 0.92 20.49 29.59 -169.99 -5.03 15.46 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.47 11.52 6.50 -13.05 -0.08 11.43 16 14 O -0.56 -15.35 12.11 5.13 0.06 -15.29 16 15 C -0.17 -3.36 8.59 -37.53 -0.32 -3.69 16 16 C -0.08 -1.48 9.82 -37.12 -0.36 -1.85 16 17 C -0.04 -0.81 4.54 -105.06 -0.48 -1.29 16 18 C -0.12 -1.99 9.80 -39.10 -0.38 -2.37 16 19 C -0.14 -2.22 10.03 -39.65 -0.40 -2.62 16 20 C -0.12 -1.99 9.69 -39.45 -0.38 -2.37 16 21 C -0.10 -1.88 5.87 -104.69 -0.61 -2.50 16 22 C -0.11 -1.64 10.01 36.00 0.36 -1.28 16 23 C -0.02 -0.43 6.26 -39.10 -0.24 -0.68 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.89 7.62 -51.93 -0.40 0.49 16 29 H 0.05 0.99 6.34 -51.93 -0.33 0.66 16 30 H 0.10 2.46 5.71 -51.92 -0.30 2.16 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.12 2.06 6.27 -52.48 -0.33 1.73 16 33 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 39 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.11 2.34 6.99 -52.49 -0.37 1.97 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -30.68 330.79 -8.49 -39.17 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.91 Total: 6.04 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.95 Total: -16.80 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.35 Total: -33.57 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.06 Total: -15.29 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.68 -8.49 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491248458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.539 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds